Organism Name: Bacillus subtilis RF1-L3 [mCherry egfp zwf ribBA and ywlf]| Organism ID: | NPO41597 |
| Organism Name: | Bacillus subtilis RF1-L3 [mCherry egfp zwf ribBA and ywlf] |
| Native / Engineered Organism: | Engineered Organism |
| Matched Taxonomy Level: | Strain |
| Organism External ID: | NCBI_Taxonomy_ID[ n.a.] |
| Organism Synonyms: | |
| Genus: | Bacillus |
| Family: | Bacillaceae |
| Kingdom: | n.a. |
| SuperKingdom: | Bacteria |
Individual Natural Products| Natural Product ID | Prefer Name (or InChiKey) | IUPAC Name | Number of Targets | Number of Activity Records |
|---|---|---|---|---|
| NPC93081 | Ornithine | (2S)-2,5-diaminopentanoic acid | 4 | 6 |
NPs produced by Co-culture Organisms (for Co-culture organisms, the full organism list can be found HERE)| Organism Name | Producer Organism | Inducer Organism | NP ID | NP Name | Effect of Co-culture | Reference |
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NPs produced by Engineered Organisms (for Engineered organisms, the full organism list can be found HERE)| Organism Name | Parent Organism Name | Engineered Gene in Organism | Purpose of Engineering | Engineering Category | Engineering Description | NP ID | NP Name | NP Yeild of Parent Organism | NP Yeild of Engineered Organism | Yeild Change | Reference |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Bacillus subtilis RF1-L3 | Bacillus subtilis RF1 | mCherry egfp zwf ribBA and ywlf | Increase NP yield | n.a. | First, we tuned the expression of mCherry and egfp genes within operons by generating libraries of tunable intergenic regions (TIGRs) and confirmed the relative expression of the two reporter genes. Next, we used this strategy to tune the expression of zwf, ribBA, and ywlf genes within operons through the TIGR library. | NPC93081 | Ornithine | n.a. | 2.7 g/L in the shake flask and 11.77 g/L in fed-batch fermentation | n.a. |
PMID[35467340] |
The Quantitative Compositions of NPs in Organism| Organism ID | NP ID | Organism Material Preparation | Organism Part | NP Quantity (Standard) | NP Quantity (Minimum) | NP Quantity (Maximum) | Quantity Unit | Reference |
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