Natural Product: NPC53868

Natural Product IDNPC53868
Common Name
?
The InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
BJDCWCLMFKKGEE-ISOSDAIHSA-N
IUPAC Name n.a.
Synonyms
Synthetic Gene Cluster n.a.
ChEMBL Identifier CHEMBL307261
PubChem CID 3000518
Chemical Classification
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000012] Lipids and lipid-like molecules
      • [CHEMONTID:0000259] Prenol lipids
        • [CHEMONTID:0001550] Sesquiterpenoids
          • [CHEMONTID:0002440] Artemisinins

The Chemical Classification was calculated by Classyfire, a software for chemical taxonomy calculation. Reference: DOI:10.1186/s13321-016-0174-y.

  Chemical Representations

Standard InCHIKey BJDCWCLMFKKGEE-ISOSDAIHSA-N
Standard InCHI InChI=1S/C15H24O5/c1-8-4-5-11-9(2)12(16)17-13-15(11)10(8)6-7-14(3,18-13)19-20-15/h8-13,16H,4-7H2,1-3H3/t8-,9-,10+,11+,12+,13-,14-,15-/m1/s1
SMILES O[C@H]1O[C@@H]2O[C@@]3(C)CC[C@@H]4[C@]2([C@H]([C@H]1C)CC[C@H]4C)OO3

  Calculated Properties

Physi-Chem Properties

Molecular Weight:   284.16 Volume:   277.722
?
Van der Waals volume.
Dense:   1.023 LogP:   1.9
?
The logarithm of the n-octanol/water distribution coefficients.
logD7.4:   1.687
?
The logarithm of the n-octanol/water distribution coefficient at pH=7.4.
LogS:   -1.55
?
The logarithm of aqueous solubility value.
Rotatable Bonds:   0.0 Rigid Bonds:   19.0
TPSA:   57.15
?
Topological Polar Surface Area.
H-Bond Acceptor:   5.0
H-Bond Donor:   1.0 Rings:   5.0
Heavy Atoms:   5.0

MedChem Properties

QED Drug-Likeness Score:   0.691 GASA:   1.0
?
GASA represents the probability of being difficult to synthesize, ranging from 0 to 1.
Synthetic Accessibility Score:   5.804 Fsp3:   1.0
MCE-18:   91.2
?
MCE-18 stands for medicinal chemistry evolution.MCE-18≥45 is considered a suitable value.
Lipinski Rule-of-5:   Rejected
Pfizer Rule:   Rejected GSK Rule:   Rejected
Golden Triangle Rule:   Rejected BMS Rule:   1
Chelating Alert:   0 PAINS Alert:   0
Colloidal aggregators:   0.196 Fluc inhibitor:   0.0
?
The fluc inhibitor value is the probability of being fLuc inhibitors, within the range of 0 to 1.
Blue fluorescence:   0.175
?
The blue fluorescence value is the probability of being blue fluorescence, within the range of 0 to 1
Green fluorescence:   0.0
?
The green fluorescence value is the probability of being green fluorescence, within the range of 0 to 1
Reactive compounds:   0.467 Promiscuous compounds:   0.148

ADMET Properties (ADMETlab3.0)

ADMET: Absorption

Caco-2 Permeability:   -4.822 MDCK Permeability:   -4.775
Pgp-inhibitor:   0.503 Pgp-substrate:   0.145
PAMPA:   0.808
?
The experimental data for Peff was logarithmically transformed (logPeff). Molecules with log Peff values below 2.0 were classified as low-permeability (Category 0), while those with log Peff values exceeding 2.5 were classified as high-permeability (Category 1).
Human Intestinal Absorption (HIA):   0.001
20% Bioavailability (F20%):   0.074 30% Bioavailability (F30%):   0.025
50% Bioavailability (F50%):   0.427

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):   0.008 MRP1:   0.388
Plasma Protein Binding (PPB):   45.653% Volume Distribution (VD):   0.29
Fu: 36.424%
?
The fraction unbound in plasms.
OATP1B1 inhibitor:   0.993
OATP1B3 inhibitor:   0.73 BCRP inhibitor:   0.117
BSEP inhibitor:   0.983

ADMET: Metabolism

CYP1A2-inhibitor:   0.849 CYP1A2-substrate:   0.005
CYP2C19-inhibitor:   0.996 CYP2C19-substrate:   0.003
CYP2C9-inhibitor:   0.623 CYP2C9-substrate:   0.006
CYP2D6-inhibitor:   0.984 CYP2D6-substrate:   0.007
CYP3A4-inhibitor:   0.014 CYP3A4-substrate:   0.003
CYP2B6-substrate:   0.772 CYP2C8-inhibitor:   0.006
HLM stability:   0.958
?
Human liver microsomal (HLM) stability. Category 0: stable+ (HLM > 30 min); Category 1: unstable- (HLM ≤ 30 min). The output value is the probability of human liver microsomal instability, where a value closer to 1 indicates a higher likelihood of instability.

ADMET: Excretion

Clearance (CL):  11.257 Half-life (T1/2):  2.124

ADMET: Toxicity

hERG Blockers:  0.187 hERG Blockers (10um):  0.599
Human Hepatotoxicity (H-HT):  0.514 Drug-induced Liver Injury (DILI):  0.623
AMES Toxicity:  0.704 Rat Oral Acute Toxicity:  0.693
Maximum Recommended Daily Dose:  0.521 Skin Sensitization:  0.999
Carcinogencity:  0.117 Eye Corrosion:  0.03
Eye Irritation:  0.651 Respiratory Toxicity:  0.208
Drug-induced Neurotoxicity:  0.297 Ototoxicity:  0.671
Hematotoxicity:  0.181 Drug-induced Nephrotoxicity:  0.157
Genotoxicity:  0.346 RPMI-8226 Immunitoxicity:  0.256
A549 Cytotoxicity:  0.034 Hek293 Cytotoxicity:  0.28
BCF:   1.645
?
Bioconcentration factors are used for considering secondary poisoning potential and assessing risks to human health via the food chain. The unit is -log10[(mg/L)/(1000*MW)].
IGC50:   3.463
?
48 hour Tetrahymena pyriformis IGC50. The unit of IGC50 is -log10[(mg/L)/(1000*MW)].
LC50DM:   4.827
?
48 hour Daphnia magna LC50. The unit of LC50DM is -log10[(mg/L)/(1000*MW)].
LC50FM:   4.179
?
96 hour fathead minnow LC50. The unit of LC50FM is -log10[(mg/L)/(1000*MW)].

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO26589 Artemisia annua L. Strain Asteraceae Eukaryota n.a. n.a. n.a. PMID[ 21030913]
NPO26589 Artemisia annua L. Strain Asteraceae Eukaryota n.a. flower n.a. DOI[10.1007/s11418-006-0112-9]
NPO26589 Artemisia annua L. Strain Asteraceae Eukaryota n.a. stem n.a. DOI[10.1007/s11418-006-0112-9]
NPO26589 Artemisia annua L. Strain Asteraceae Eukaryota n.a. leaf n.a. DOI[10.1007/s11418-006-0112-9]
NPO448 Millettia usaramensis Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[26651537]
NPO40074 Cleistochlamys kirkii Species Annonaceae Eukaryota Leaves n.a. n.a. PMID[28001067]
NPO40135 Flindersia pimenteliana Species Rutaceae Eukaryota Leaves n.a. n.a. PMID[29236492]
NPO40003 Acronychia pubescens Species Rutaceae Eukaryota Roots n.a. n.a. PMID[30865443]
NPO41040 Sphaerocoryne gracilis ssp. gracilis Strain Annonaceae Eukaryota n.a. n.a. n.a. PMID[32067457]
NPO40139 Ganoderma colossus Species Polyporaceae Eukaryota n.a. n.a. n.a. PMID[32639735]
NPO40732 Amathia lamourouxi Species n.a. n.a. n.a. n.a. n.a. PMID[33105995]
NPO26589 Artemisia annua L. Strain Asteraceae Eukaryota n.a. n.a. n.a. PMID[6387056]
NPO40139 Ganoderma colossus Species Polyporaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO40135 Flindersia pimenteliana Species Rutaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO40074 Cleistochlamys kirkii Species Annonaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO26589 Artemisia annua L. Strain Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO10506 Artemisia apiacea Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO448 Millettia usaramensis Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO26589 Artemisia annua L. Strain Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO10506 Artemisia apiacea Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO448 Millettia usaramensis Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO10506 Artemisia apiacea Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO26589 Artemisia annua L. Strain Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO26589 Artemisia annua L. Strain Asteraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO10506 Artemisia apiacea Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO10506 Artemisia apiacea Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO26589 Artemisia annua L. Strain Asteraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO448 Millettia usaramensis Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26589 Artemisia annua L. Strain Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10506 Artemisia apiacea Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]

Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



  NP Quantity Composition/Concentration

Organism ID Organism Name Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



 Biological Activity

Molecular-level activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT686 Individual protein Histone deacetylase 3 Homo sapiens IC50 n.a. n.a. n.a. PMID[34185525]
NPT20556 Single protein Replicase polyprotein 1ab Severe acute respiratory syndrome coronavirus 2 Inhibition = 5.717 % DOI[10.6019/CHEMBL4495564]
NPT692 Individual protein Histone deacetylase 6 Homo sapiens Inhibition = 4.97 % HDAC6 screening dataset using tau-based substrate in an enzymatic assay yields selective inhibitors and activators
NPT29935 Single protein Cysteine protease falcipain-2 Plasmodium falciparum Ki n.a. n.a. n.a. PMID[33901900]
NPT685 Individual protein Histone deacetylase 2 Homo sapiens IC50 n.a. n.a. n.a. PMID[34185525]
NPT29935 Single protein Cysteine protease falcipain-2 Plasmodium falciparum IC50 > 100000.0 nM PMID[33901900]
NPT684 Individual protein Histone deacetylase 1 Homo sapiens IC50 n.a. n.a. n.a. PMID[34185525]
NPT692 Individual protein Histone deacetylase 6 Homo sapiens Inhibition = -139.34 % HDAC6 screening dataset using tau-based substrate in an enzymatic assay yields selective inhibitors and activators
NPT692 Individual protein Histone deacetylase 6 Homo sapiens IC50 n.a. n.a. n.a. PMID[34185525]
NPT3566 Individual protein Cdk-related protein kinase 6 Plasmodium falciparum IC50 n.a. n.a. n.a. PMID[36736152]
NPT668 Individual protein P-glycoprotein 1 Homo sapiens Ratio = 0.89 n.a. PMID[26741854]

In vitro activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT81 Cell line A549 Homo sapiens IC50 = 80420.0 nM PMID[26595184]
NPT83 Cell line MCF7 Homo sapiens GI50 = 33220.0 nM PMID[26741854]
NPT616 Cell line MDCK Canis lupus familiaris Ratio = 0.8 n.a. PMID[26741854]
NPT71 Cell line HEK293 Homo sapiens Activity = 54.0 % PMID[26651537]
NPT71 Cell line HEK293 Homo sapiens Activity = 50.0 % PMID[26651537]
NPT189 Cell line Vero Chlorocebus aethiops Ratio IC50 = 63.0 n.a. PMID[27371926]
NPT189 Cell line Vero Chlorocebus aethiops Ratio IC50 = 12.0 n.a. PMID[27371926]
NPT189 Cell line Vero Chlorocebus aethiops Ratio IC50 = 25.0 n.a. PMID[27371926]
NPT65 Cell line HepG2 Homo sapiens Ratio IC50 = 1.81 n.a. PMID[27371926]
NPT116 Cell line HL-60 Homo sapiens Activity = 8.0 % PMID[27371926]
NPT116 Cell line HL-60 Homo sapiens Activity = 20.0 % PMID[27371926]
NPT116 Cell line HL-60 Homo sapiens Activity = 32.0 % PMID[27371926]
NPT116 Cell line HL-60 Homo sapiens Activity = 41.0 % PMID[27371926]
NPT71 Cell line HEK293 Homo sapiens GI = 50.0 % PMID[32067457]
NPT737 Cell line HUVEC Homo sapiens IC50 = 1400.0 nM PMID[28549888]
NPT737 Cell line HUVEC Homo sapiens Efficacy = 28.0 % PMID[28549888]
NPT1886 Cell line J774 Mus musculus EC50 = 1500.0 nM PMID[29215279]
NPT1535 Cell line U-87 MG Homo sapiens IC50 > 50000.0 nM PMID[29789258]
NPT519 Cell line SH-SY5Y Homo sapiens IC50 > 50000.0 nM PMID[29789258]
NPT83 Cell line MCF7 Homo sapiens IC50 > 50000.0 nM PMID[29789258]
NPT82 Cell line MDA-MB-231 Homo sapiens IC50 = 45700.0 nM PMID[29789258]
NPT81 Cell line A549 Homo sapiens IC50 = 46800.0 nM PMID[29789258]
NPT1083 Cell line A-375 Homo sapiens IC50 = 38500.0 nM PMID[29789258]
NPT404 Cell line CCRF-CEM Homo sapiens EC50 = 85.0 nM PMID[29887512]
NPT71 Cell line HEK293 Homo sapiens IC50 = 9900.0 nM PMID[29236492]
NPT139 Cell line HT-29 Homo sapiens IC50 = 18520.0 nM PMID[29649740]
NPT139 Cell line HT-29 Homo sapiens IC50 > 100000.0 nM PMID[29649740]
NPT82 Cell line MDA-MB-231 Homo sapiens IC50 = 5640.0 nM PMID[29649740]
NPT82 Cell line MDA-MB-231 Homo sapiens IC50 = 47110.0 nM PMID[29649740]
NPT1083 Cell line A-375 Homo sapiens IC50 > 50000.0 nM PMID[29597166]
NPT81 Cell line A549 Homo sapiens IC50 = 29900.0 nM PMID[29597166]
NPT393 Cell line HCT-116 Homo sapiens IC50 = 32800.0 nM PMID[29597166]
NPT681 Cell line PC-12 Rattus norvegicus IC50 > 50000.0 nM PMID[29597166]
NPT116 Cell line HL-60 Homo sapiens GI50 = 191.0 nM PMID[29102180]
NPT466 Cell line U-937 Homo sapiens GI50 = 910.0 nM PMID[29102180]
NPT111 Cell line K562 Homo sapiens GI50 > 10000.0 nM PMID[29102180]
NPT2678 Cell line NB-4 Homo sapiens GI50 = 151.0 nM PMID[29102180]
NPT306 Cell line PC-3 Homo sapiens GI50 > 10000.0 nM PMID[29102180]
NPT858 Cell line LNCaP Homo sapiens GI50 > 10000.0 nM PMID[29102180]
NPT82 Cell line MDA-MB-231 Homo sapiens GI50 = 12580.0 nM PMID[29102180]
NPT378 Cell line NCI/ADR-RES Homo sapiens GI50 = 3320.0 nM PMID[29102180]
NPT83 Cell line MCF7 Homo sapiens IC50 = 39900.0 nM PMID[31546197]
NPT1034 Cell line Lu1 Homo sapiens IC50 = 39900.0 nM PMID[31546197]
NPT116 Cell line HL-60 Homo sapiens IC50 = 39900.0 nM PMID[31546197]
NPT168 Cell line P388 Mus musculus IC50 = 39900.0 nM PMID[31546197]
NPT111 Cell line K562 Homo sapiens IC50 = 42440.0 nM PMID[31546197]
NPT306 Cell line PC-3 Homo sapiens IC50 = 42440.0 nM PMID[31546197]
NPT762 Cell line A-431 Homo sapiens IC50 = 42440.0 nM PMID[31546197]
NPT82 Cell line MDA-MB-231 Homo sapiens IC50 = 42440.0 nM PMID[31546197]
NPT407 Cell line COLO 205 Homo sapiens IC50 = 42440.0 nM PMID[31546197]
NPT81 Cell line A549 Homo sapiens IC50 = 42440.0 nM PMID[31546197]
NPT65 Cell line HepG2 Homo sapiens IC50 = 63700.0 nM PMID[31546197]
NPT91 Cell line KB Homo sapiens IC50 = 95300.0 nM PMID[31546197]
NPT2413 Cell line PC-14 Homo sapiens Activity = 45.0 % PMID[31784199]
NPT393 Cell line HCT-116 Homo sapiens Activity = 48.3 % PMID[31784199]
NPT466 Cell line U-937 Homo sapiens TGI = 70.0 % PMID[31784199]
NPT466 Cell line U-937 Homo sapiens Activity = 70.0 % PMID[31784199]
NPT76 Cell line C6 Rattus norvegicus Activity = 66.42 % PMID[31784199]
NPT71 Cell line HEK293 Homo sapiens GI = 31.0 % PMID[30537832]
NPT1886 Cell line J774 Mus musculus EC50 = 1530.0 nM PMID[27291102]
NPT71 Cell line HEK293 Homo sapiens GI = 41.1 % PMID[30865443]
NPT179 Cell line A2780 Homo sapiens IC50 = 1000.0 nM PMID[32352776]
NPT377 Cell line OVCAR-3 Homo sapiens IC50 = 1000.0 nM PMID[32352776]
NPT71 Cell line HEK293 Homo sapiens IC50 n.a. n.a. n.a. PMID[38416027]
NPT71 Cell line HEK293 Homo sapiens IC50 > 4000.0 nM PMID[36799121]
NPT82 Cell line MDA-MB-231 Homo sapiens IC50 = 5290.0 nM PMID[31945642]
NPT83 Cell line MCF7 Homo sapiens IC50 = 39900.0 nM PMID[31945642]
NPT116 Cell line HL-60 Homo sapiens IC50 = 39900.0 nM PMID[31945642]
NPT111 Cell line K562 Homo sapiens IC50 = 21828.0 nM PMID[36240546]
NPT34 Cell line BV-2 Mus musculus IC50 = 120300.0 nM PMID[33852975]
NPT81 Cell line A549 Homo sapiens EC50 > 25000.0 nM PMID[33901900]
NPT83 Cell line MCF7 Homo sapiens IC50 = 6880.0 nM PMID[34399390]
NPT116 Cell line HL-60 Homo sapiens IC50 = 299.0 nM PMID[31945642]
NPT65 Cell line HepG2 Homo sapiens IC50 = 63700.0 nM PMID[31945642]
NPT1171 Cell line HEp-2 Homo sapiens IC50 = 18100.0 nM PMID[36332549]
NPT404 Cell line CCRF-CEM Homo sapiens IC50 = 5127.0 nM PMID[36240546]
NPT116 Cell line HL-60 Homo sapiens IC50 n.a. n.a. n.a. PMID[34185525]
NPT401 Cell line 786-0 Homo sapiens IC50 = 630.0 nM PMID[34399390]
NPT34 Cell line BV-2 Mus musculus IC50 = 7400.0 nM PMID[33852975]
NPT111 Cell line K562 Homo sapiens IC50 = 15740.0 nM PMID[31945642]
NPT81 Cell line A549 Homo sapiens IC50 > 40000.0 nM PMID[36240546]
NPT71 Cell line HEK293 Homo sapiens IC50 = 15740.0 nM PMID[31945642]
NPT116 Cell line HL-60 Homo sapiens IC50 = 6820.0 nM PMID[36332549]
NPT306 Cell line PC-3 Homo sapiens IC50 = 15740.0 nM PMID[31945642]
NPT397 Cell line NCI-H460 Homo sapiens IC50 = 5290.0 nM PMID[31945642]
NPT306 Cell line PC-3 Homo sapiens IC50 = 2490.0 nM PMID[34399390]
NPT15 Cell line Jurkat Homo sapiens IC50 = 5210.0 nM PMID[34399390]
NPT81 Cell line A549 Homo sapiens Inhibition = 54.3 % PMID[36538859]
NPT1970 Cell line THP-1 Homo sapiens IC50 = 9050.0 nM PMID[36332549]
NPT552 Cell line P388/ADR Mus musculus IC50 = 20670.0 nM PMID[31945642]
NPT65 Cell line HepG2 Homo sapiens IC50 n.a. n.a. n.a. PMID[34185525]
NPT519 Cell line SH-SY5Y Homo sapiens IC50 > 40000.0 nM PMID[36240546]
NPT165 Cell line HeLa Homo sapiens IC50 = 2660.0 nM PMID[34399390]
NPT91 Cell line KB Homo sapiens IC50 = 95300.0 nM PMID[31945642]
NPT81 Cell line A549 Homo sapiens IC50 = 230.0 nM PMID[36538859]
NPT3887 Cell line CNE Homo sapiens IC50 = 18400.0 nM PMID[36332549]
NPT393 Cell line HCT-116 Homo sapiens IC50 > 40000.0 nM PMID[36240546]
NPT116 Cell line HL-60 Homo sapiens IC50 = 61176.0 nM PMID[36240546]
NPT762 Cell line A-431 Homo sapiens IC50 = 15740.0 nM PMID[31945642]
NPT168 Cell line P388 Mus musculus IC50 = 39900.0 nM PMID[31945642]
NPT659 Cell line SMMC-7721 Homo sapiens IC50 = 400.0 nM PMID[31945642]
NPT82 Cell line MDA-MB-231 Homo sapiens IC50 = 15740.0 nM PMID[31945642]
NPT407 Cell line COLO 205 Homo sapiens IC50 = 15740.0 nM PMID[31945642]
NPT139 Cell line HT-29 Homo sapiens IC50 = 5290.0 nM PMID[31945642]
NPT81 Cell line A549 Homo sapiens IC50 = 5290.0 nM PMID[31945642]
NPT1229 Cell line Huh-7 Homo sapiens CC50 > 100.0 ug.mL-1 PMID[36306538]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 440.0 nM PMID[26640981]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 0.146 nM PMID[26651537]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 0.15 nM PMID[28001067]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 0.11 nM PMID[28001067]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum EC50 = 4.32 nM PMID[28195463]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum TIME = 3.0 hr PMID[28692297]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum TIME = 1.0 hr PMID[28692297]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum EC50 = 5.5 nM PMID[29215279]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum EC50 = 5.9 nM PMID[29215279]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum EC50 = 2.4 nM PMID[29887512]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 0.4 nM PMID[20547801]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 0.3 nM PMID[19188388]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 3.0 nM PMID[21489789]
NPT20555 Organism SARS-CoV-2 Severe acute respiratory syndrome coronavirus 2 Inhibition = -5.76 % DOI[10.21203/rs.3.rs-23951/v1]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum EC50 = 2.6 nM PMID[30503412]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 0.5 nM PMID[30537832]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 4.7 nM PMID[30530192]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 4.2 nM PMID[30530192]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum EC50 = 5.47 nM PMID[27291102]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum EC50 = 5.86 nM PMID[27291102]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 0.9 nM PMID[19307369]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 1.6 nM PMID[20547801]
NPT20555 Organism SARS-CoV-2 Severe acute respiratory syndrome coronavirus 2 Inhibition = 0.15 % DOI[10.6019/CHEMBL4495565]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 1.4 nM PMID[20547801]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 > 10.0 ug.mL-1 PMID[32639735]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum EC50 = 17.4 nM PMID[32959656]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum EC50 = 37.4 nM PMID[32959656]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 2.0 nM PMID[33105995]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 2.7 nM PMID[33541085]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 2.68 nM PMID[33541085]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 3.2 nM PMID[33541085]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 3.7 nM PMID[33541085]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 5.6 nM PMID[33541085]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 5.2 nM PMID[33541085]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 5.9 nM PMID[33541085]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 2.0 nM PMID[34748348]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 0.6 nM PMID[36799121]
NPT28438 Unchecked Unchecked n.a. Ratio IC50 = 2.2 n.a. PMID[36799121]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 2.0 nM PMID[37816683]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 21.0 nM PMID[38416027]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 1.3 nM PMID[36799121]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 3.1 nM PMID[33852304]
NPT28438 Unchecked Unchecked n.a. IC50 = 5290.0 nM PMID[31945642]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 2.59 nM PMID[34267877]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 0.45 nM PMID[34213340]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 2.85 nM PMID[35175762]
NPT28438 Unchecked Unchecked n.a. Ratio IC50 = 1.3 n.a. PMID[34058708]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 4.7 nM PMID[33508479]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum EC50 = 1.44 nM PMID[38262446]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC90 = 0.0027 ug.mL-1 PMID[35461019]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum EC50 = 4.97 nM PMID[33901900]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 2.78 nM PMID[35175762]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 1.5 nM PMID[33508479]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 2.2 nM PMID[33508479]
NPT28438 Unchecked Unchecked n.a. Ratio IC50 = 0.9 n.a. PMID[34782182]
NPT28438 Unchecked Unchecked n.a. Inhibition n.a. n.a. % PMID[35304225]
NPT28438 Unchecked Unchecked n.a. IC50 = 1500.0 nM PMID[31945642]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 9.0 nM PMID[33508479]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 440.0 nM PMID[33508479]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 3.7 nM PMID[33508479]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 5.0 nM PMID[33508479]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum EC50 = 5.495 nM PMID[33979164]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 0.4 nM PMID[34058708]
NPT28438 Unchecked Unchecked n.a. IC50 = 50000.0 nM PMID[36332549]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum EC50 = 0.14 nM PMID[36736152]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 0.7 nM PMID[36306538]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 31.0 nM PMID[36561069]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum EC50 = 1.445 nM PMID[38262446]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 1.4 nM PMID[33508479]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 1.1 nM PMID[33508479]
NPT28438 Unchecked Unchecked n.a. IC50 = 53140.0 nM PMID[36538859]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 2.34 nM PMID[35175762]
NPT28438 Unchecked Unchecked n.a. IC50 n.a. n.a. n.a. PMID[34185525]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 0.6 nM PMID[34058708]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 2.0 nM PMID[34058708]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum EC50 = 2.4 nM PMID[33508479]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 1.04 nM PMID[33508479]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 3.0 nM PMID[34782182]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 8.1 nM PMID[35175762]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 1.0 nM PMID[33508479]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 2.0 nM PMID[37163950]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 3.0 nM PMID[34185525]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 2.8 nM PMID[34782182]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 1.02 nM PMID[34267877]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum TIME = 0.0 hr PMID[34185525]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 1.0 nM PMID[37163950]
NPT28697 Cell line A 172 Homo sapiens IC50 = 66000.0 nM PMID[36332549]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum Inhibition = 100.0 % PMID[37634761]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum log(activity) = 5.12 n.a. PMID[34185525]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 6.2 nM PMID[33508479]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 2.08 nM PMID[35175762]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 31.0 nM PMID[34479064]
NPT28438 Unchecked Unchecked n.a. IC50 = 39900.0 nM PMID[31945642]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 4.2 nM PMID[33508479]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum EC50 = 5.888 nM PMID[33979164]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. IC50 > 100000.0 nM PMID[26595184]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. IC50 = 21920.0 nM PMID[26595184]
NPT610 Others Molecular identity unknown n.a. Activity = 37.0 % PMID[27371926]
NPT610 Others Molecular identity unknown n.a. Activity = 58.0 % PMID[27371926]
NPT610 Others Molecular identity unknown n.a. Activity = 8.0 % PMID[27371926]
NPT610 Others Molecular identity unknown n.a. Activity = 2.0 % PMID[27371926]
NPT610 Others Molecular identity unknown n.a. Activity = 49.0 % PMID[27371926]
NPT610 Others Molecular identity unknown n.a. Activity = 6.0 % PMID[27371926]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. GI = 93.0 % PMID[27371926]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. GI = 91.0 % PMID[27371926]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. GI = 58.0 % PMID[27371926]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. GI = 71.0 % PMID[27371926]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. GI = 41.0 % PMID[27371926]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. GI = 43.0 % PMID[27371926]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. GI = 36.0 % PMID[27371926]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. GI = 39.0 % PMID[27371926]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. GI = 32.0 % PMID[27371926]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. GI = 42.0 % PMID[27371926]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. GI = 48.1 % PMID[27371926]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. GI = 63.0 % PMID[27371926]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. IC50 = 2000.0 nM PMID[27371926]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. IC50 = 58000.0 nM PMID[27371926]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. IC50 = 29000.0 nM PMID[27371926]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. IC50 = 32000.0 nM PMID[27371926]
NPT610 Others Molecular identity unknown n.a. Activity = 5.0 % PMID[27371926]
NPT610 Others Molecular identity unknown n.a. Activity = 27.0 % PMID[27371926]
NPT610 Others Molecular identity unknown n.a. Activity = 62.0 % PMID[27371926]
NPT610 Others Molecular identity unknown n.a. Activity = 34.0 % PMID[27371926]
NPT610 Others Molecular identity unknown n.a. Activity = 4.0 % PMID[27371926]
NPT610 Others Molecular identity unknown n.a. Activity = 75.0 % PMID[27371926]
NPT610 Others Molecular identity unknown n.a. Activity = 20.0 % PMID[27371926]
NPT30138 Protein family Histone deacetylase Homo sapiens IC50 n.a. n.a. n.a. PMID[34185525]
NPT757 Organism Plasmodium falciparum 3D7 Plasmodium falciparum 3D7 IC50 = 0.1 nM PMID[26651537]
NPT3901 Tissue Chorioallantoic membrane Gallus gallus Activity = 2.8 % PMID[28549888]
NPT21742 Cell line L02 Homo sapiens IC50 = 34000.0 nM PMID[29789258]
NPT474 Organism Plasmodium berghei Plasmodium berghei ED50 = 1.95 mg.kg-1 PMID[11141088]
NPT21742 Cell line L02 Homo sapiens IC50 > 50000.0 nM PMID[29597166]
NPT2254 Organism Schistosoma mansoni Schistosoma mansoni Activity = 66.0 % PMID[32134263]
NPT474 Organism Plasmodium berghei Plasmodium berghei ED50 = 1.3 mg.kg-1 PMID[30715882]
NPT474 Organism Plasmodium berghei Plasmodium berghei ED50 = 1.15 mg.kg-1 PMID[33508479]
NPT19 Organism Escherichia coli Escherichia coli MIC = 1024.0 ug.mL-1 PMID[38283226]
NPT21742 Cell line L02 Homo sapiens IC50 = 24332.0 nM PMID[36240546]
NPT2 Others Unspecified n.a. GI50 = 3320 nM PMID[26741854]
NPT2 Others Unspecified n.a. Ratio IC50 = 1.81 n.a. PMID[26595184]
NPT475 Organism Plasmodium yoelii Plasmodium yoelii GI = 100.0 % PMID[28195463]
NPT475 Organism Plasmodium yoelii Plasmodium yoelii TIME = 360.0 hr PMID[28195463]
NPT475 Organism Plasmodium yoelii Plasmodium yoelii TIME = 96.0 hr PMID[28195463]

In vivo activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT32 Organism Mus musculus Mus musculus Activity n.a. n.a. n.a. PMID[34847494]
NPT475 Organism Plasmodium yoelii Plasmodium yoelii Survival = 100.0 % PMID[28195463]





 Experimental ADME

Experiment Model Experiment Tissue ADME Type ADME Relation ADME Value ADME Unit Reference
Canis lupus familiaris n.a. Papp = 25.1 10'-6 cm/s PMID[26741854]
Canis lupus familiaris n.a. Papp = 31.37 10'-6 cm/s PMID[26741854]
n.a. n.a. T1/2 = 17.0 hr PMID[34213340]
Rattus norvegicus n.a. T1/2 = 0.5 hr PMID[34213340]
Mus musculus n.a. F = 1.4 % PMID[34213340]
Rattus norvegicus n.a. T1/2 = 0.3833 hr PMID[34213340]





 Experimental Toxicity

Quantitative toxicity

Experiment Model Experiment Organism Toxicity Type Toxicity Relation Toxicity Value Toxicity Unit Reference
- Plasmodium falciparum LT99.9 = 21.2 hr PMID[34185525]

Common Abbreviations:
LC: Lethal Concentration; LD: Lethal Dose; LT:Lethal Time; NOAEL: No-observed-adverse-effect Level; BMDL: Benchmark Dose Lower Confidence Limit; BMD: Benchmark Dose; BMC:Benchmark Concentration; LOAEL: Lowest Observed Adverse Effect Level; RfD:Reference Dose; RfC:Reference Concentration; MRL: Minimal Risk Level; MEG: Maximum Exposure Guideline; PAC: Protective Action Criteria

Categorical toxicity labels

Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption
Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP toxicity records from domain-specific databases. These databases include:
ToxValDB: a curated database that compiles quantitative toxicity values for chemicals from diverse public sources to support toxicological research and risk assessment.
TOXRIC: a comprehensive, free-to-access, online database providing toxicological/feature data. The toxicity labels are retrieved from this database. [PMID: 36400569]


  Chemically structural similarity

Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes approximately 50,000 NPs with experimentally-derived bioactivity available in NPASS)

Similarity is measured using the Tanimoto coefficient (Tc) , which compares the binary fingerprints of two molecules. Tc is calculated as the intersection divided by the union of '1' bits in the fingerprints, ranging from 0 to 1, with 1 indicating highest similarity.

●  The left chart: Distribution of similarity level between NPC53868 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.5 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC31046
1.0 High Similarity NPC209666
1.0 High Similarity NPC486251
1.0 High Similarity NPC486262
1.0 High Similarity NPC200167
1.0 High Similarity NPC80142
0.6078 Remote Similarity NPC5209
0.6078 Remote Similarity NPC285480
0.6078 Remote Similarity NPC30443
0.6078 Remote Similarity NPC260977
0.6078 Remote Similarity NPC45256
0.6078 Remote Similarity NPC51956
0.6078 Remote Similarity NPC29005
0.5179 Remote Similarity NPC148872

Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC53868 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.5 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
1.0 High Similarity NPD1810 Approved
1.0 High Similarity NPD1811 Phase 4
0.6078 Remote Similarity NPD1779 Approved
0.6078 Remote Similarity NPD1780 Phase 4
0.6078 Remote Similarity NPD2254 Phase 4
0.5849 Remote Similarity NPD2686 Phase 4
0.5849 Remote Similarity NPD2687 Approved
0.569 Remote Similarity NPD3710 Pre-clinical

Bioactivity similarity

  Bioactivity similarity

Similar Natural Products in NPASS

Similarity level is defined by Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.
Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data