NPASS Compound

Natural Product: NPC518609

Natural Product ID	NPC518609
Common Name ? The InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.	(8~{R},9~{S},10~{R},13~{R},14~{S},17~{R})-10,13-dimethyl-17-[(1~{R},4~{R})-1,4,5-trimethylhexyl]-1,2,6,7,8,9,11,12,14,15,16,17-dodecahydrocyclopenta[a]phenanthren-3-one
IUPAC Name	(8~{R},9~{S},10~{R},13~{R},14~{S},17~{R})-10,13-dimethyl-17-[(1~{R},4~{R})-1,4,5-trimethylhexyl]-1,2,6,7,8,9,11,12,14,15,16,17-dodecahydrocyclopenta[a]phenanthren-3-one
Synonyms
Synthetic Gene Cluster	n.a.
ChEMBL Identifier	n.a.
PubChem CID	n.a.
Chemical Classification	CHEMONTID:0000000 [Organic compounds]

The Chemical Classification was calculated by Classyfire, a software for chemical taxonomy calculation. Reference: DOI:10.1186/s13321-016-0174-y.

Chemical Representations

RDKit 3D 75 78 0 0 0 0 0 0 0 0999 V2000 6.2960 1.3153 1.2573 C 0 0 0 0 0 0 0 0 0 0 0 0 6.3270 -0.0897 0.7075 C 0 0 0 0 0 0 0 0 0 0 0 0 6.8352 -1.0874 1.6926 C 0 0 0 0 0 0 0 0 0 0 0 0 4.9177 -0.4392 0.2115 C 0 0 2 0 0 0 0 0 0 0 0 0 4.9596 -1.8393 -0.3335 C 0 0 0 0 0 0 0 0 0 0 0 0 4.6598 0.5595 -0.9262 C 0 0 0 0 0 0 0 0 0 0 0 0 3.3263 0.3806 -1.5452 C 0 0 0 0 0 0 0 0 0 0 0 0 2.1687 0.5526 -0.5817 C 0 0 1 0 0 0 0 0 0 0 0 0 2.2546 1.9833 -0.0311 C 0 0 0 0 0 0 0 0 0 0 0 0 0.8521 0.3993 -1.2453 C 0 0 1 0 0 0 0 0 0 0 0 0 0.6997 -0.9731 -1.9139 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.7604 -1.3713 -1.7856 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.3672 -0.0433 -1.4002 C 0 0 1 0 0 0 0 0 0 0 0 0 -2.8029 -0.0169 -1.0526 C 0 0 1 0 0 0 0 0 0 0 0 0 -3.4353 -1.3556 -1.2934 C 0 0 0 0 0 0 0 0 0 0 0 0 -4.1155 -1.9850 -0.0981 C 0 0 0 0 0 0 0 0 0 0 0 0 -5.0484 -0.8895 0.3389 C 0 0 0 0 0 0 0 0 0 0 0 0 -6.3355 -0.9640 0.1159 C 0 0 0 0 0 0 0 0 0 0 0 0 -7.1967 0.1312 0.5588 C 0 0 0 0 0 0 0 0 0 0 0 0 -8.3808 -0.0578 0.7979 O 0 0 0 0 0 0 0 0 0 0 0 0 -6.5047 1.4468 0.6820 C 0 0 0 0 0 0 0 0 0 0 0 0 -5.2682 1.2582 1.4928 C 0 0 0 0 0 0 0 0 0 0 0 0 -4.3148 0.1997 1.0074 C 0 0 1 0 0 0 0 0 0 0 0 0 -3.7645 -0.4085 2.3000 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.2050 0.7526 0.1385 C 0 0 1 0 0 0 0 0 0 0 0 0 -2.0892 1.1581 1.0589 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.8337 1.5905 0.2657 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.3566 0.3477 -0.3511 C 0 0 2 0 0 0 0 0 0 0 0 0 -0.0961 -0.7205 0.6662 C 0 0 0 0 0 0 0 0 0 0 0 0 6.9942 1.3503 2.1174 H 0 0 0 0 0 0 0 0 0 0 0 0 5.2612 1.5986 1.5200 H 0 0 0 0 0 0 0 0 0 0 0 0 6.7014 2.0652 0.5212 H 0 0 0 0 0 0 0 0 0 0 0 0 6.9663 -0.0483 -0.2195 H 0 0 0 0 0 0 0 0 0 0 0 0 7.5264 -0.5339 2.3937 H 0 0 0 0 0 0 0 0 0 0 0 0 6.0183 -1.5207 2.2792 H 0 0 0 0 0 0 0 0 0 0 0 0 7.4754 -1.8679 1.2130 H 0 0 0 0 0 0 0 0 0 0 0 0 4.1760 -0.3613 1.0043 H 0 0 0 0 0 0 0 0 0 0 0 0 3.9795 -2.3221 -0.0924 H 0 0 0 0 0 0 0 0 0 0 0 0 5.7314 -2.4084 0.2314 H 0 0 0 0 0 0 0 0 0 0 0 0 5.1587 -1.8799 -1.4270 H 0 0 0 0 0 0 0 0 0 0 0 0 4.9548 1.5603 -0.6313 H 0 0 0 0 0 0 0 0 0 0 0 0 5.4332 0.2533 -1.6983 H 0 0 0 0 0 0 0 0 0 0 0 0 3.2065 1.1932 -2.3063 H 0 0 0 0 0 0 0 0 0 0 0 0 3.2308 -0.6225 -1.9945 H 0 0 0 0 0 0 0 0 0 0 0 0 2.2421 -0.1185 0.2890 H 0 0 0 0 0 0 0 0 0 0 0 0 1.4467 2.6102 -0.4639 H 0 0 0 0 0 0 0 0 0 0 0 0 2.1813 2.0336 1.0524 H 0 0 0 0 0 0 0 0 0 0 0 0 3.1931 2.4960 -0.4118 H 0 0 0 0 0 0 0 0 0 0 0 0 0.6671 1.1577 -2.0277 H 0 0 0 0 0 0 0 0 0 0 0 0 1.3034 -1.7529 -1.4634 H 0 0 0 0 0 0 0 0 0 0 0 0 1.0051 -0.8515 -2.9719 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.8807 -2.1379 -0.9843 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.0708 -1.7256 -2.7892 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.1035 0.6209 -2.2896 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.2527 0.5865 -1.9332 H 0 0 0 0 0 0 0 0 0 0 0 0 -2.7468 -2.1041 -1.6988 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.2626 -1.3300 -2.0753 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.4493 -2.3439 0.6738 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.7495 -2.8109 -0.4890 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.7444 -1.8100 -0.3789 H 0 0 0 0 0 0 0 0 0 0 0 0 -7.1857 2.0977 1.2642 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.3441 1.9314 -0.2947 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.5978 0.9783 2.5288 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.7103 2.2248 1.5137 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.6227 -0.9359 2.7857 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.4960 0.4100 3.0235 H 0 0 0 0 0 0 0 0 0 0 0 0 -2.9774 -1.1357 2.1630 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.6380 1.7614 -0.1646 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.7285 0.3842 1.7392 H 0 0 0 0 0 0 0 0 0 0 0 0 -2.3441 2.0450 1.6820 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.1106 2.3718 -0.4402 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.1727 1.9758 1.1025 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.0093 -1.3087 0.8591 H 0 0 0 0 0 0 0 0 0 0 0 0 0.6999 -1.4238 0.4422 H 0 0 0 0 0 0 0 0 0 0 0 0 0.2234 -0.1862 1.6103 H 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 2 3 1 0 2 4 1 0 4 5 1 0 4 6 1 0 6 7 1 0 7 8 1 0 8 9 1 0 8 10 1 0 10 11 1 0 11 12 1 0 12 13 1 0 13 14 1 0 14 15 1 0 15 16 1 0 16 17 1 0 17 18 2 0 18 19 1 0 19 20 2 0 19 21 1 0 21 22 1 0 22 23 1 0 23 24 1 1 23 25 1 0 25 26 1 0 26 27 1 0 27 28 1 0 28 29 1 1 28 10 1 0 28 13 1 0 25 14 1 0 23 17 1 0 1 30 1 0 1 31 1 0 1 32 1 0 2 33 1 0 3 34 1 0 3 35 1 0 3 36 1 0 4 37 1 1 5 38 1 0 5 39 1 0 5 40 1 0 6 41 1 0 6 42 1 0 7 43 1 0 7 44 1 0 8 45 1 1 9 46 1 0 9 47 1 0 9 48 1 0 10 49 1 6 11 50 1 0 11 51 1 0 12 52 1 0 12 53 1 0 13 54 1 6 14 55 1 6 15 56 1 0 15 57 1 0 16 58 1 0 16 59 1 0 18 60 1 0 21 61 1 0 21 62 1 0 22 63 1 0 22 64 1 0 24 65 1 0 24 66 1 0 24 67 1 0 25 68 1 6 26 69 1 0 26 70 1 0 27 71 1 0 27 72 1 0 29 73 1 0 29 74 1 0 29 75 1 0 M END

Standard InCHIKey	QQIOPZFVTIHASB-JMIKMVMESA-N
Standard InCHI	InChI=1S/C28H46O/c1-18(2)19(3)7-8-20(4)24-11-12-25-23-10-9-21-17-22(29)13-15-27(21,5)26(23)14-16-28(24,25)6/h17-20,23-26H,7-16H2,1-6H3/t19-,20-,23-,24-,25+,26+,27+,28-/m1/s1
SMILES	CC(C)[C@H](C)CC[C@@H](C)[C@H]1CC[C@H]2[C@H]3CCC4=CC(=O)CC[C@]4(C)[C@H]3CC[C@]12C

Calculated Properties

Physi-Chem Properties

Molecular Weight:	398.35	Volume:	462.136 ? Van der Waals volume.
Dense:	0.862	LogP:	7.599 ? The logarithm of the n-octanol/water distribution coefficients.
logD7.4:	5.03 ? The logarithm of the n-octanol/water distribution coefficient at pH=7.4.	LogS:	-7.636 ? The logarithm of aqueous solubility value.
Rotatable Bonds:	5.0	Rigid Bonds:	21.0
TPSA:	17.07 ? Topological Polar Surface Area.	H-Bond Acceptor:	1.0
H-Bond Donor:	0.0	Rings:	4.0
Heavy Atoms:	1.0

MedChem Properties

QED Drug-Likeness Score:	0.461	GASA:	1.0 ? GASA represents the probability of being difficult to synthesize, ranging from 0 to 1.
Synthetic Accessibility Score:	4.244	Fsp³:	0.893
MCE-18:	68.264 ? MCE-18 stands for medicinal chemistry evolution.MCE-18≥45 is considered a suitable value.	Lipinski Rule-of-5:	Rejected
Pfizer Rule:	Accepted	GSK Rule:	Accepted
Golden Triangle Rule:	Accepted	BMS Rule:	0
Chelating Alert:	0	PAINS Alert:	0
Colloidal aggregators:	0.817	Fluc inhibitor:	0.01 ? The fluc inhibitor value is the probability of being fLuc inhibitors, within the range of 0 to 1.
Blue fluorescence:	0.004 ? The blue fluorescence value is the probability of being blue fluorescence, within the range of 0 to 1	Green fluorescence:	0.0 ? The green fluorescence value is the probability of being green fluorescence, within the range of 0 to 1
Reactive compounds:	0.725	Promiscuous compounds:	0.292

ADMET Properties (ADMETlab3.0)

ADMET: Absorption

Caco-2 Permeability:	-5.005	MDCK Permeability:	-4.976
Pgp-inhibitor:	0.023	Pgp-substrate:	0.003
PAMPA:	0.004 ? The experimental data for Peff was logarithmically transformed (logPeff). Molecules with log Peff values below 2.0 were classified as low-permeability (Category 0), while those with log Peff values exceeding 2.5 were classified as high-permeability (Category 1).	Human Intestinal Absorption (HIA):	0.0
20% Bioavailability (F20%):	0.034	30% Bioavailability (F30%):	0.247
50% Bioavailability (F50%):	0.939

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):	0.029	MRP1:	0.069
Plasma Protein Binding (PPB):	95.92%	Volume Distribution (VD):	-0.21
Fu:	4.15% ? The fraction unbound in plasms.	OATP1B1 inhibitor:	1.0
OATP1B3 inhibitor:	1.0	BCRP inhibitor:	0.05
BSEP inhibitor:	0.109

ADMET: Metabolism

CYP1A2-inhibitor:	0.713	CYP1A2-substrate:	0.995
CYP2C19-inhibitor:	1.0	CYP2C19-substrate:	0.125
CYP2C9-inhibitor:	0.508	CYP2C9-substrate:	0.031
CYP2D6-inhibitor:	0.15	CYP2D6-substrate:	0.154
CYP3A4-inhibitor:	1.0	CYP3A4-substrate:	1.0
CYP2B6-substrate:	0.0	CYP2C8-inhibitor:	1.0
HLM stability:	0.997 ? Human liver microsomal (HLM) stability. Category 0: stable+ (HLM > 30 min); Category 1: unstable- (HLM ≤ 30 min). The output value is the probability of human liver microsomal instability, where a value closer to 1 indicates a higher likelihood of instability.

ADMET: Excretion

Clearance (CL):

16.078

Half-life (T1/2):

0.447

ADMET: Toxicity

hERG Blockers:	0.137	hERG Blockers (10um):	0.416
Human Hepatotoxicity (H-HT):	0.685	Drug-induced Liver Injury (DILI):	0.49
AMES Toxicity:	0.261	Rat Oral Acute Toxicity:	0.121
Maximum Recommended Daily Dose:	0.444	Skin Sensitization:	0.956
Carcinogencity:	0.94	Eye Corrosion:	0.898
Eye Irritation:	0.992	Respiratory Toxicity:	0.887
Drug-induced Neurotoxicity:	0.216	Ototoxicity:	0.318
Hematotoxicity:	0.726	Drug-induced Nephrotoxicity:	0.548
Genotoxicity:	0.031	RPMI-8226 Immunitoxicity:	0.046
A549 Cytotoxicity:	0.291	Hek293 Cytotoxicity:	0.588
BCF:	3.461 ? Bioconcentration factors are used for considering secondary poisoning potential and assessing risks to human health via the food chain. The unit is -log10[(mg/L)/(1000*MW)].	IGC50:	5.119 ? 48 hour Tetrahymena pyriformis IGC50. The unit of IGC50 is -log10[(mg/L)/(1000*MW)].
LC50DM:	5.485 ? 48 hour Daphnia magna LC50. The unit of LC50DM is -log10[(mg/L)/(1000*MW)].	LC50FM:	6.148 ? 96 hour fathead minnow LC50. The unit of LC50FM is -log10[(mg/L)/(1000*MW)].

Species Source

Organism ID	Organism Name	Taxonomy Level	Family	SuperKingdom	Isolation Part	Collection Location	Collection Time	Reference
NPO19866	Arabidopsis thaliana	Species	Brassicaceae	Eukaryota	n.a.	n.a.	n.a.	DOI[10.1016/S0014-5793(03)00033-4]
NPO19866	Arabidopsis thaliana	Species	Brassicaceae	Eukaryota	n.a.	n.a.	n.a.	DOI[10.1021/ac991142i]
NPO19866	Arabidopsis thaliana	Species	Brassicaceae	Eukaryota	n.a.	n.a.	n.a.	DOI[10.1034/j.1399-3054.2003.00030.x]
NPO19866	Arabidopsis thaliana	Species	Brassicaceae	Eukaryota	n.a.	n.a.	n.a.	DOI[10.1046/j.1365-3040.2001.00686.x]
NPO19866	Arabidopsis thaliana	Species	Brassicaceae	Eukaryota	n.a.	n.a.	n.a.	DOI[10.1074/jbc.274.1.397]
NPO19866	Arabidopsis thaliana	Species	Brassicaceae	Eukaryota	n.a.	n.a.	n.a.	DOI[10.1074/jbc.M302362200]
NPO19866	Arabidopsis thaliana	Species	Brassicaceae	Eukaryota	n.a.	n.a.	n.a.	DOI[10.1074/jbc.M314195200]
NPO19866	Arabidopsis thaliana	Species	Brassicaceae	Eukaryota	n.a.	n.a.	n.a.	DOI[10.1074/jbc.M411109200]
NPO19866	Arabidopsis thaliana	Species	Brassicaceae	Eukaryota	n.a.	n.a.	n.a.	DOI[10.1104/pp.103.022368]
NPO19866	Arabidopsis thaliana	Species	Brassicaceae	Eukaryota	n.a.	leaf	n.a.	PMID[10952545]
NPO19866	Arabidopsis thaliana	Species	Brassicaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[10952545]
NPO19866	Arabidopsis thaliana	Species	Brassicaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[11005203]
NPO19866	Arabidopsis thaliana	Species	Brassicaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[12637544]
NPO19866	Arabidopsis thaliana	Species	Brassicaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[12805618]
NPO19866	Arabidopsis thaliana	Species	Brassicaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[14745019]
NPO19866	Arabidopsis thaliana	Species	Brassicaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[15280363]
NPO19866	Arabidopsis thaliana	Species	Brassicaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[15820655]
NPO19866	Arabidopsis thaliana	Species	Brassicaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[15834012]
NPO19866	Arabidopsis thaliana	Species	Brassicaceae	Eukaryota	aerial parts	n.a.	n.a.	PMID[15844959]
NPO19866	Arabidopsis thaliana	Species	Brassicaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[1684022]
NPO19866	Arabidopsis thaliana	Species	Brassicaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[17611796]
NPO19866	Arabidopsis thaliana	Species	Brassicaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[18057039]
NPO19866	Arabidopsis thaliana	Species	Brassicaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[18235971]
NPO19866	Arabidopsis thaliana	Species	Brassicaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[18318836]
NPO26601	Zanthoxylum wutaiense	Species	Rutaceae	Eukaryota	root wood	n.a.	n.a.	PMID[18564877]
NPO19866	Arabidopsis thaliana	Species	Brassicaceae	Eukaryota	n.a.	leaf	n.a.	PMID[19521717]
NPO19866	Arabidopsis thaliana	Species	Brassicaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[21193570]
NPO19866	Arabidopsis thaliana	Species	Brassicaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[21194489]
NPO19866	Arabidopsis thaliana	Species	Brassicaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[21395888]
NPO19866	Arabidopsis thaliana	Species	Brassicaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[21800258]
NPO26601	Zanthoxylum wutaiense	Species	Rutaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[22472691]
NPO19866	Arabidopsis thaliana	Species	Brassicaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[23370715]
NPO19866	Arabidopsis thaliana	Species	Brassicaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[23950498]
NPO19866	Arabidopsis thaliana	Species	Brassicaceae	Eukaryota	n.a.	root	n.a.	PMID[24163311]
NPO19866	Arabidopsis thaliana	Species	Brassicaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[24285094]
NPO19866	Arabidopsis thaliana	Species	Brassicaceae	Eukaryota	n.a.	root	n.a.	PMID[25457500]
NPO19866	Arabidopsis thaliana	Species	Brassicaceae	Eukaryota	n.a.	root	n.a.	PMID[27363486]
NPO19866	Arabidopsis thaliana	Species	Brassicaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[27432888]
NPO19866	Arabidopsis thaliana	Species	Brassicaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[8278506]
NPO19866	Arabidopsis thaliana	Species	Brassicaceae	Eukaryota	n.a.	n.a.	n.a.	Database[Article]
NPO19866	Arabidopsis thaliana	Species	Brassicaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO26601	Zanthoxylum wutaiense	Species	Rutaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO19866	Arabidopsis thaliana	Species	Brassicaceae	Eukaryota	n.a.	root	n.a.	Database[MetaboLights]
NPO19866	Arabidopsis thaliana	Species	Brassicaceae	Eukaryota	n.a.	n.a.	n.a.	Database[MetaboLights]
NPO19866	Arabidopsis thaliana	Species	Brassicaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO26601	Zanthoxylum wutaiense	Species	Rutaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]

Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
☉ UNPD: Universal Natural Products Database [PMID: 23638153].
☉ StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
☉ TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
☉ TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
☉ TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
☉ TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
☉ HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
☉ MetaboLights: a metabolomics database [PMID: 27010336].
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

NP Quantity Composition/Concentration

Organism ID	Organism Name	Organism Material Preparation	Organism Part	NP Quantity (Standard)	NP Quantity (Minimum)	NP Quantity (Maximum)	Quantity Unit	Reference

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
☉ DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
☉ PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

Biological Activity

Molecular-level activity

Target ID	Target Type	Target Name	Target Organism	Activity Type	Activity Relation	Value	Unit	Reference

In vitro activity

Target ID	Target Type	Target Name	Target Organism	Activity Type	Activity Relation	Value	Unit	Reference

In vivo activity

Target ID	Target Type	Target Name	Target Organism	Activity Type	Activity Relation	Value	Unit	Reference

Experimental ADME

Experiment Model	Experiment Tissue	ADME Type	ADME Relation	ADME Value	ADME Unit	Reference

Experimental Toxicity

Quantitative toxicity

Experiment Model	Experiment Organism	Toxicity Type	Toxicity Relation	Toxicity Value	Toxicity Unit	Reference

Common Abbreviations:
LC: Lethal Concentration; LD: Lethal Dose; LT:Lethal Time; NOAEL: No-observed-adverse-effect Level; BMDL: Benchmark Dose Lower Confidence Limit; BMD: Benchmark Dose; BMC:Benchmark Concentration; LOAEL: Lowest Observed Adverse Effect Level; RfD:Reference Dose; RfC:Reference Concentration; MRL: Minimal Risk Level; MEG: Maximum Exposure Guideline; PAC: Protective Action Criteria

Categorical toxicity labels

Hepatotoxicity	Carcinogenicity	Mutagenicity	Cardiotoxicity	Respiratory Toxicity	Eye Irritation	Endocrine Disruption

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP toxicity records from domain-specific databases. These databases include:
☉ ToxValDB: a curated database that compiles quantitative toxicity values for chemicals from diverse public sources to support toxicological research and risk assessment.
☉ TOXRIC: a comprehensive, free-to-access, online database providing toxicological/feature data. The toxicity labels are retrieved from this database. [PMID: 36400569]

Chemically structural similarity

Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes approximately 50,000 NPs with experimentally-derived bioactivity available in NPASS)

Similarity is measured using the Tanimoto coefficient (Tc) , which compares the binary fingerprints of two molecules. Tc is calculated as the intersection divided by the union of '1' bits in the fingerprints, ranging from 0 to 1, with 1 indicating highest similarity.

● The left chart: Distribution of similarity level between NPC518609 and all remaining natural products in the NPASS database.
● The right table: Most similar natural products (Tc>=0.5 or Top200).

range	Tanimoto Coefficient
0-0.1	21182
0.1-0.2	25021
0.2-0.3	3340
0.3-0.4	227
0.4-0.5	47
0.5-0.6	24
0.6-0.7	5
0.7-0.8	1
0.8-0.85	4
0.85-0.9	1
0.9-0.95	0
0.95-1	0

Similarity Score	Similarity Level	Natural Product ID
0.8913	High Similarity	NPC149203
0.8478	Intermediate Similarity	NPC282593
0.8298	Intermediate Similarity	NPC35734
0.8298	Intermediate Similarity	NPC159577
0.8298	Intermediate Similarity	NPC602429
0.7551	Intermediate Similarity	NPC115023
0.7447	Intermediate Similarity	NPC307176
0.7447	Intermediate Similarity	NPC321874
0.7222	Intermediate Similarity	NPC320514
0.7059	Intermediate Similarity	NPC237712
0.7	Intermediate Similarity	NPC214043
0.7	Intermediate Similarity	NPC85774
0.6923	Remote Similarity	NPC249312
0.6296	Remote Similarity	NPC303613
0.62	Remote Similarity	NPC139397
0.6071	Remote Similarity	NPC469948
0.6038	Remote Similarity	NPC255021
0.5962	Remote Similarity	NPC2634
0.5962	Remote Similarity	NPC265782
0.5962	Remote Similarity	NPC251929
0.5862	Remote Similarity	NPC309603
0.5741	Remote Similarity	NPC227064
0.5741	Remote Similarity	NPC474228
0.5741	Remote Similarity	NPC329043
0.5741	Remote Similarity	NPC58841
0.5741	Remote Similarity	NPC161423
0.5714	Remote Similarity	NPC323765
0.5636	Remote Similarity	NPC144258
0.5636	Remote Similarity	NPC327115
0.5614	Remote Similarity	NPC310010
0.5614	Remote Similarity	NPC326627
0.5439	Remote Similarity	NPC20610
0.5312	Remote Similarity	NPC187159
0.5263	Remote Similarity	NPC247325
0.5263	Remote Similarity	NPC328539
0.5254	Remote Similarity	NPC473999
0.5254	Remote Similarity	NPC185936
0.5254	Remote Similarity	NPC168027
0.5246	Remote Similarity	NPC489872
0.5161	Remote Similarity	NPC305039
0.5161	Remote Similarity	NPC205860

Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

● The left chart: Distribution of similarity level between NPC518609 and all drugs/candidates.
● The right table: Most similar clinical/approved drugs (Tc>=0.5 or Top200).

range	Tanimoto Coefficient
0-0.1	6672
0.1-0.2	2207
0.2-0.3	183
0.3-0.4	54
0.4-0.5	15
0.5-0.6	14
0.6-0.7	4
0.7-0.8	1
0.8-0.85	0
0.85-0.9	0
0.9-0.95	0
0.95-1	0

Similarity Score	Similarity Level	Drug ID	Developmental Stage
0.7447	Intermediate Similarity	NPD4747	Phase 4
0.6364	Remote Similarity	NPD5737	Phase 4
0.6182	Remote Similarity	NPD6938	Clinical (unspecified phase)
0.6182	Remote Similarity	NPD6939	Phase 3
0.614	Remote Similarity	NPD6672	Phase 4
0.5962	Remote Similarity	NPD4691	Approved
0.5741	Remote Similarity	NPD3666	Phase 4
0.5741	Remote Similarity	NPD4221	Phase 4
0.569	Remote Similarity	NPD6409	Approved
0.5614	Remote Similarity	NPD4753	Phase 2
0.5614	Remote Similarity	NPD5330	Phase 4
0.5439	Remote Similarity	NPD4693	Phase 3
0.541	Remote Similarity	NPD6083	Phase 4
0.541	Remote Similarity	NPD6084	Phase 2
0.5161	Remote Similarity	NPD6684	Phase 4
0.5161	Remote Similarity	NPD6904	Phase 4
0.5161	Remote Similarity	NPD7334	Approved
0.5161	Remote Similarity	NPD7521	Phase 4
0.5079	Remote Similarity	NPD6903	Phase 4

Bioactivity similarity

Similar Natural Products in NPASS

Similarity level is defined by Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
☉ A: chemistry similarity;
☉ B: biological targets similarity;
☉ C: networks similarity;
☉ D: cell-based bioactivity similarity;
☉ E: similarity based on clinical data.
Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity

B: biological targets similarity

C: networks similarity

D: cell-based bioactivity similarity

E: similarity based on clinical data