NPASS Compound

Natural Product: NPC484976

Natural Product ID	NPC484976
Common Name ? The InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.	YEJPXXGWBGULEA-GULAJQBHSA-N
IUPAC Name	n.a.
Synonyms
Synthetic Gene Cluster	n.a.
ChEMBL Identifier	n.a.
PubChem CID	n.a.
Chemical Classification	CHEMONTID:0000000 [Organic compounds]

The Chemical Classification was calculated by Classyfire, a software for chemical taxonomy calculation. Reference: DOI:10.1186/s13321-016-0174-y.

Chemical Representations

RDKit 3D 81 84 0 0 0 0 0 0 0 0999 V2000 8.0051 -0.5143 -1.1610 C 0 0 0 0 0 0 0 0 0 0 0 0 7.5039 0.5663 -0.6008 C 0 0 0 0 0 0 0 0 0 0 0 0 8.0548 1.8937 -1.0117 C 0 0 0 0 0 0 0 0 0 0 0 0 6.4388 0.4939 0.4015 C 0 0 0 0 0 0 0 0 0 0 0 0 6.0155 1.5910 0.8822 O 0 0 0 0 0 0 0 0 0 0 0 0 5.8416 -0.7342 0.8823 C 0 0 0 0 0 0 0 0 0 0 0 0 4.6088 -1.2768 0.2443 C 0 0 0 0 0 0 0 0 0 0 0 0 3.4493 -0.3260 0.3659 C 0 0 2 0 0 0 0 0 0 0 0 0 2.1923 -0.9016 -0.2152 C 0 0 1 0 0 0 0 0 0 0 0 0 1.8615 -2.2806 0.4222 C 0 0 1 0 0 0 0 0 0 0 0 0 0.4271 -2.4981 -0.0337 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.0480 -1.1603 -0.5632 C 0 0 1 0 0 0 0 0 0 0 0 0 0.2227 -1.0629 -2.0200 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.4101 -0.8331 -0.1563 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.6811 0.4031 0.2135 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.7489 1.5383 0.2702 C 0 0 0 0 0 0 0 0 0 0 0 0 0.7013 1.1790 -0.0274 C 0 0 0 0 0 0 0 0 0 0 0 0 0.9148 -0.2370 0.2112 C 0 0 2 0 0 0 0 0 0 0 0 0 0.7230 -0.4900 1.7057 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.1008 0.6873 0.6214 C 0 0 1 0 0 0 0 0 0 0 0 0 -3.2070 0.1045 2.0257 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.3655 2.1619 0.7419 C 0 0 0 0 0 0 0 0 0 0 0 0 -4.8278 2.3318 1.0788 C 0 0 0 0 0 0 0 0 0 0 0 0 -5.6202 1.8626 -0.0891 C 0 0 1 0 0 0 0 0 0 0 0 0 -5.3465 0.4606 -0.5211 C 0 0 0 0 0 0 0 0 0 0 0 0 -6.3763 -0.4305 0.1864 C 0 0 0 0 0 0 0 0 0 0 0 0 -5.7625 0.3840 -2.0028 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.9608 -0.0091 -0.3795 C 0 0 2 0 0 0 0 0 0 0 0 0 -3.8360 -1.4913 -0.0679 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.4183 -1.9288 -0.1875 C 0 0 0 0 0 0 0 0 0 0 0 0 -6.9736 2.0678 0.1324 O 0 0 0 0 0 0 0 0 0 0 0 0 2.6542 -3.2831 -0.1558 O 0 0 0 0 0 0 0 0 0 0 0 0 3.8092 0.7858 -0.6090 C 0 0 0 0 0 0 0 0 0 0 0 0 4.5412 0.4305 -1.5850 O 0 0 0 0 0 0 0 0 0 0 0 0 3.4478 2.0792 -0.5515 O 0 0 0 0 0 0 0 0 0 0 0 0 8.7895 -0.4842 -1.8973 H 0 0 0 0 0 0 0 0 0 0 0 0 7.6168 -1.4724 -0.8774 H 0 0 0 0 0 0 0 0 0 0 0 0 7.2731 2.5797 -1.3728 H 0 0 0 0 0 0 0 0 0 0 0 0 8.8863 1.7670 -1.7028 H 0 0 0 0 0 0 0 0 0 0 0 0 8.4835 2.3527 -0.0769 H 0 0 0 0 0 0 0 0 0 0 0 0 5.6713 -0.6581 2.0286 H 0 0 0 0 0 0 0 0 0 0 0 0 6.6684 -1.5282 0.8807 H 0 0 0 0 0 0 0 0 0 0 0 0 4.8011 -1.4685 -0.8107 H 0 0 0 0 0 0 0 0 0 0 0 0 4.4120 -2.2585 0.7282 H 0 0 0 0 0 0 0 0 0 0 0 0 3.3194 0.0910 1.3251 H 0 0 0 0 0 0 0 0 0 0 0 0 2.2949 -1.1056 -1.2818 H 0 0 0 0 0 0 0 0 0 0 0 0 1.8880 -2.2777 1.4934 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.2233 -2.9522 0.7052 H 0 0 0 0 0 0 0 0 0 0 0 0 0.4163 -3.2055 -0.9152 H 0 0 0 0 0 0 0 0 0 0 0 0 0.7778 -0.1752 -2.3391 H 0 0 0 0 0 0 0 0 0 0 0 0 0.8047 -1.9527 -2.3872 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.7155 -1.0793 -2.6426 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.0733 2.3899 -0.3782 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.8412 1.9470 1.3222 H 0 0 0 0 0 0 0 0 0 0 0 0 0.9076 1.5659 -1.0288 H 0 0 0 0 0 0 0 0 0 0 0 0 1.2909 1.7505 0.7330 H 0 0 0 0 0 0 0 0 0 0 0 0 0.1173 -1.3892 1.9164 H 0 0 0 0 0 0 0 0 0 0 0 0 1.6644 -0.4367 2.2811 H 0 0 0 0 0 0 0 0 0 0 0 0 0.1031 0.3525 2.1487 H 0 0 0 0 0 0 0 0 0 0 0 0 -2.6191 0.8133 2.6794 H 0 0 0 0 0 0 0 0 0 0 0 0 -2.6765 -0.8611 2.1126 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.2146 0.0935 2.4248 H 0 0 0 0 0 0 0 0 0 0 0 0 -2.7799 2.5316 1.6058 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.1586 2.7221 -0.1762 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.9983 3.4229 1.1895 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.1166 1.8775 2.0385 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.3496 2.5293 -0.9597 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.0429 -0.7884 1.1539 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.5725 -1.3129 -0.4574 H 0 0 0 0 0 0 0 0 0 0 0 0 -7.3138 0.1612 0.2145 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.9931 -0.6585 -2.2844 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.8654 0.6892 -2.5795 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.5701 1.0926 -2.2215 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.4491 0.1126 -1.3817 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.2338 -1.7056 0.9524 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.5068 -2.0246 -0.7902 H 0 0 0 0 0 0 0 0 0 0 0 0 -2.3360 -2.5163 -1.1492 H 0 0 0 0 0 0 0 0 0 0 0 0 -2.2286 -2.6742 0.6115 H 0 0 0 0 0 0 0 0 0 0 0 0 -7.1535 2.9522 0.5143 H 0 0 0 0 0 0 0 0 0 0 0 0 2.8714 -3.0310 -1.0786 H 0 0 0 0 0 0 0 0 0 0 0 0 3.2446 2.6587 -1.3724 H 0 0 0 0 0 0 0 0 0 0 0 0 1 2 2 0 2 3 1 0 2 4 1 0 4 5 2 0 4 6 1 0 6 7 1 0 7 8 1 0 8 9 1 0 9 10 1 0 10 11 1 0 11 12 1 0 12 13 1 6 12 14 1 0 14 15 2 0 15 16 1 0 16 17 1 0 17 18 1 0 18 19 1 1 15 20 1 0 20 21 1 1 20 22 1 0 22 23 1 0 23 24 1 0 24 25 1 0 25 26 1 0 25 27 1 0 25 28 1 0 28 29 1 0 29 30 1 0 24 31 1 0 10 32 1 0 8 33 1 0 33 34 2 0 33 35 1 0 18 9 1 0 28 20 1 0 18 12 1 0 30 14 1 0 1 36 1 0 1 37 1 0 3 38 1 0 3 39 1 0 3 40 1 0 6 41 1 0 6 42 1 0 7 43 1 0 7 44 1 0 8 45 1 1 9 46 1 6 10 47 1 1 11 48 1 0 11 49 1 0 13 50 1 0 13 51 1 0 13 52 1 0 16 53 1 0 16 54 1 0 17 55 1 0 17 56 1 0 19 57 1 0 19 58 1 0 19 59 1 0 21 60 1 0 21 61 1 0 21 62 1 0 22 63 1 0 22 64 1 0 23 65 1 0 23 66 1 0 24 67 1 6 26 68 1 0 26 69 1 0 26 70 1 0 27 71 1 0 27 72 1 0 27 73 1 0 28 74 1 6 29 75 1 0 29 76 1 0 30 77 1 0 30 78 1 0 31 79 1 0 32 80 1 0 35 81 1 0 M END

Standard InCHIKey	YEJPXXGWBGULEA-GULAJQBHSA-N
Standard InCHI	InChI=1S/C30H46O5/c1-17(2)21(31)10-8-18(26(34)35)25-22(32)16-30(7)20-9-11-23-27(3,4)24(33)13-14-28(23,5)19(20)12-15-29(25,30)6/h18,22-25,32-33H,1,8-16H2,2-7H3,(H,34,35)/t18-,22-,23+,24+,25+,28-,29-,30+/m1/s1
SMILES	C=C(C)C(=O)CC[C@H]([C@H]1[C@@H](C[C@@]2(C)C3=C(CC[C@]12C)[C@@]1(C)CC[C@@H](C(C)(C)[C@@H]1CC3)O)O)C(=O)O

Calculated Properties

Physi-Chem Properties

Molecular Weight:	486.33	Volume:	526.615 ? Van der Waals volume.
Dense:	0.924	LogP:	2.295 ? The logarithm of the n-octanol/water distribution coefficients.
logD7.4:	2.263 ? The logarithm of the n-octanol/water distribution coefficient at pH=7.4.	LogS:	-3.776 ? The logarithm of aqueous solubility value.
Rotatable Bonds:	6.0	Rigid Bonds:	23.0
TPSA:	94.83 ? Topological Polar Surface Area.	H-Bond Acceptor:	5.0
H-Bond Donor:	3.0	Rings:	4.0
Heavy Atoms:	5.0

MedChem Properties

QED Drug-Likeness Score:	0.331	GASA:	1.0 ? GASA represents the probability of being difficult to synthesize, ranging from 0 to 1.
Synthetic Accessibility Score:	5.001	Fsp³:	0.8
MCE-18:	86.889 ? MCE-18 stands for medicinal chemistry evolution.MCE-18≥45 is considered a suitable value.	Lipinski Rule-of-5:	Rejected
Pfizer Rule:	Rejected	GSK Rule:	Accepted
Golden Triangle Rule:	Rejected	BMS Rule:	1
Chelating Alert:	0	PAINS Alert:	0
Colloidal aggregators:	0.916	Fluc inhibitor:	0.0 ? The fluc inhibitor value is the probability of being fLuc inhibitors, within the range of 0 to 1.
Blue fluorescence:	0.04 ? The blue fluorescence value is the probability of being blue fluorescence, within the range of 0 to 1	Green fluorescence:	0.001 ? The green fluorescence value is the probability of being green fluorescence, within the range of 0 to 1
Reactive compounds:	0.347	Promiscuous compounds:	0.337

ADMET Properties (ADMETlab3.0)

ADMET: Absorption

Caco-2 Permeability:	-5.461	MDCK Permeability:	-5.038
Pgp-inhibitor:	0.002	Pgp-substrate:	0.024
PAMPA:	1.0 ? The experimental data for Peff was logarithmically transformed (logPeff). Molecules with log Peff values below 2.0 were classified as low-permeability (Category 0), while those with log Peff values exceeding 2.5 were classified as high-permeability (Category 1).	Human Intestinal Absorption (HIA):	0.003
20% Bioavailability (F20%):	0.577	30% Bioavailability (F30%):	0.329
50% Bioavailability (F50%):	0.996

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):	0.392	MRP1:	0.986
Plasma Protein Binding (PPB):	91.58%	Volume Distribution (VD):	-0.477
Fu:	8.453% ? The fraction unbound in plasms.	OATP1B1 inhibitor:	1.0
OATP1B3 inhibitor:	0.999	BCRP inhibitor:	0.027
BSEP inhibitor:	0.729

ADMET: Metabolism

CYP1A2-inhibitor:	0.0	CYP1A2-substrate:	0.0
CYP2C19-inhibitor:	0.004	CYP2C19-substrate:	0.0
CYP2C9-inhibitor:	0.0	CYP2C9-substrate:	0.0
CYP2D6-inhibitor:	0.0	CYP2D6-substrate:	0.001
CYP3A4-inhibitor:	0.816	CYP3A4-substrate:	1.0
CYP2B6-substrate:	0.0	CYP2C8-inhibitor:	0.01
HLM stability:	0.005 ? Human liver microsomal (HLM) stability. Category 0: stable+ (HLM > 30 min); Category 1: unstable- (HLM ≤ 30 min). The output value is the probability of human liver microsomal instability, where a value closer to 1 indicates a higher likelihood of instability.

ADMET: Excretion

Clearance (CL):

6.773

Half-life (T1/2):

0.871

ADMET: Toxicity

hERG Blockers:	0.007	hERG Blockers (10um):	0.04
Human Hepatotoxicity (H-HT):	0.498	Drug-induced Liver Injury (DILI):	0.138
AMES Toxicity:	0.329	Rat Oral Acute Toxicity:	0.297
Maximum Recommended Daily Dose:	0.201	Skin Sensitization:	0.995
Carcinogencity:	0.828	Eye Corrosion:	0.069
Eye Irritation:	0.797	Respiratory Toxicity:	0.799
Drug-induced Neurotoxicity:	0.047	Ototoxicity:	0.624
Hematotoxicity:	0.566	Drug-induced Nephrotoxicity:	0.898
Genotoxicity:	0.48	RPMI-8226 Immunitoxicity:	0.049
A549 Cytotoxicity:	0.154	Hek293 Cytotoxicity:	0.078
BCF:	0.534 ? Bioconcentration factors are used for considering secondary poisoning potential and assessing risks to human health via the food chain. The unit is -log10[(mg/L)/(1000*MW)].	IGC50:	3.587 ? 48 hour Tetrahymena pyriformis IGC50. The unit of IGC50 is -log10[(mg/L)/(1000*MW)].
LC50DM:	5.303 ? 48 hour Daphnia magna LC50. The unit of LC50DM is -log10[(mg/L)/(1000*MW)].	LC50FM:	4.402 ? 96 hour fathead minnow LC50. The unit of LC50FM is -log10[(mg/L)/(1000*MW)].

Species Source

Organism ID	Organism Name	Taxonomy Level	Family	SuperKingdom	Isolation Part	Collection Location	Collection Time	Reference
NPO23577	Wolfiporia cocos	Species	Coriolaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[11975480]
NPO23577	Wolfiporia cocos	Species	Coriolaceae	Eukaryota	epidermis of the sclerotia	n.a.	n.a.	PMID[19746919]
NPO23577	Wolfiporia cocos	Species	Coriolaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[27808511]
NPO23577	Wolfiporia cocos	Species	Coriolaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[8984162]
NPO23577	Wolfiporia cocos	Species	Coriolaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO23577	Wolfiporia cocos	Species	Coriolaceae	Eukaryota	n.a.	n.a.	n.a.	Database[TCMID]
NPO23577	Wolfiporia cocos	Species	Coriolaceae	Eukaryota	n.a.	n.a.	n.a.	Database[TM-MC]
NPO23577	Wolfiporia cocos	Species	Coriolaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]

Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
☉ UNPD: Universal Natural Products Database [PMID: 23638153].
☉ StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
☉ TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
☉ TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
☉ TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
☉ TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
☉ HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
☉ MetaboLights: a metabolomics database [PMID: 27010336].
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

NP Quantity Composition/Concentration

Organism ID	Organism Name	Organism Material Preparation	Organism Part	NP Quantity (Standard)	NP Quantity (Minimum)	NP Quantity (Maximum)	Quantity Unit	Reference

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
☉ DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
☉ PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

Biological Activity

Activity Type	# Activity
IC50	4

Activity Type	# Activity
Cell line	4

Molecular-level activity

Target ID	Target Type	Target Name	Target Organism	Activity Type	Activity Relation	Value	Unit	Reference

In vitro activity

Target ID	Target Type	Target Name	Target Organism	Activity Type	Activity Relation	Value	Unit	Reference
NPT111	Cell line	K562	Homo sapiens	IC50	>	40000.0	nM	PMID[27808511]
NPT116	Cell line	HL-60	Homo sapiens	IC50	>	40000.0	nM	PMID[27808511]
NPT404	Cell line	CCRF-CEM	Homo sapiens	IC50	>	40000.0	nM	PMID[27808511]
NPT112	Cell line	MOLT-4	Homo sapiens	IC50	>	40000.0	nM	PMID[27808511]

In vivo activity

Target ID	Target Type	Target Name	Target Organism	Activity Type	Activity Relation	Value	Unit	Reference

Experimental ADME

Experiment Model	Experiment Tissue	ADME Type	ADME Relation	ADME Value	ADME Unit	Reference

Experimental Toxicity

Quantitative toxicity

Experiment Model	Experiment Organism	Toxicity Type	Toxicity Relation	Toxicity Value	Toxicity Unit	Reference

Common Abbreviations:
LC: Lethal Concentration; LD: Lethal Dose; LT:Lethal Time; NOAEL: No-observed-adverse-effect Level; BMDL: Benchmark Dose Lower Confidence Limit; BMD: Benchmark Dose; BMC:Benchmark Concentration; LOAEL: Lowest Observed Adverse Effect Level; RfD:Reference Dose; RfC:Reference Concentration; MRL: Minimal Risk Level; MEG: Maximum Exposure Guideline; PAC: Protective Action Criteria

Categorical toxicity labels

Hepatotoxicity	Carcinogenicity	Mutagenicity	Cardiotoxicity	Respiratory Toxicity	Eye Irritation	Endocrine Disruption

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP toxicity records from domain-specific databases. These databases include:
☉ ToxValDB: a curated database that compiles quantitative toxicity values for chemicals from diverse public sources to support toxicological research and risk assessment.
☉ TOXRIC: a comprehensive, free-to-access, online database providing toxicological/feature data. The toxicity labels are retrieved from this database. [PMID: 36400569]

Chemically structural similarity

Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes approximately 50,000 NPs with experimentally-derived bioactivity available in NPASS)

Similarity is measured using the Tanimoto coefficient (Tc) , which compares the binary fingerprints of two molecules. Tc is calculated as the intersection divided by the union of '1' bits in the fingerprints, ranging from 0 to 1, with 1 indicating highest similarity.

● The left chart: Distribution of similarity level between NPC484976 and all remaining natural products in the NPASS database.
● The right table: Most similar natural products (Tc>=0.5 or Top200).

range	Tanimoto Coefficient
0-0.1	16975
0.1-0.2	28498
0.2-0.3	3937
0.3-0.4	336
0.4-0.5	83
0.5-0.6	18
0.6-0.7	7
0.7-0.8	0
0.8-0.85	0
0.85-0.9	0
0.9-0.95	0
0.95-1	0

Similarity Score	Similarity Level	Natural Product ID
0.7903	Intermediate Similarity	NPC484974
0.7903	Intermediate Similarity	NPC23434
0.75	Intermediate Similarity	NPC76895
0.6522	Remote Similarity	NPC484971
0.6522	Remote Similarity	NPC484970
0.6377	Remote Similarity	NPC54689
0.6286	Remote Similarity	NPC243866
0.6111	Remote Similarity	NPC484973
0.6027	Remote Similarity	NPC184848
0.6027	Remote Similarity	NPC69548
0.5942	Remote Similarity	NPC55309
0.5942	Remote Similarity	NPC28252
0.5857	Remote Similarity	NPC469400
0.5735	Remote Similarity	NPC471724
0.5634	Remote Similarity	NPC233836
0.5634	Remote Similarity	NPC159046
0.5634	Remote Similarity	NPC48330
0.5634	Remote Similarity	NPC187376
0.5541	Remote Similarity	NPC484975
0.5541	Remote Similarity	NPC321301
0.5405	Remote Similarity	NPC183546
0.5342	Remote Similarity	NPC173272
0.5263	Remote Similarity	NPC294480
0.52	Remote Similarity	NPC45324
0.52	Remote Similarity	NPC162001
0.5135	Remote Similarity	NPC155479
0.5132	Remote Similarity	NPC186810
0.5067	Remote Similarity	NPC312215

Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

● The left chart: Distribution of similarity level between NPC484976 and all drugs/candidates.
● The right table: Most similar clinical/approved drugs (Tc>=0.5 or Top200).

range	Tanimoto Coefficient
0-0.1	5239
0.1-0.2	3767
0.2-0.3	141
0.3-0.4	3
0.4-0.5	0
0.5-0.6	0
0.6-0.7	0
0.7-0.8	0
0.8-0.85	0
0.85-0.9	0
0.9-0.95	0
0.95-1	0

Similarity Score	Similarity Level	Drug ID	Developmental Stage
		NPD

Bioactivity similarity

Similar Natural Products in NPASS

Similarity level is defined by Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
☉ A: chemistry similarity;
☉ B: biological targets similarity;
☉ C: networks similarity;
☉ D: cell-based bioactivity similarity;
☉ E: similarity based on clinical data.
Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity

B: biological targets similarity

C: networks similarity

D: cell-based bioactivity similarity

E: similarity based on clinical data