Natural Product: NPC475462

Natural Product IDNPC475462
Common Name
?
The InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
Azadirachtin A
IUPAC Name n.a.
Synonyms
Synthetic Gene Cluster n.a.
ChEMBL Identifier CHEMBL506084
PubChem CID 44584063
Chemical Classification
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000012] Lipids and lipid-like molecules
      • [CHEMONTID:0000259] Prenol lipids
        • [CHEMONTID:0001553] Triterpenoids
          • [CHEMONTID:0002380] Limonoids

The Chemical Classification was calculated by Classyfire, a software for chemical taxonomy calculation. Reference: DOI:10.1186/s13321-016-0174-y.

  Chemical Representations

Standard InCHIKey FTNJWQUOZFUQQJ-GEPYADMXSA-N
Standard InCHI InChI=1S/C35H44O16/c1-8-15(2)24(38)49-18-12-19(48-16(3)36)32(26(39)43-6)13-46-21-22(32)31(18)14-47-34(42,27(40)44-7)25(31)29(4,23(21)37)35-20-11-17(30(35,5)51-35)33(41)9-10-45-28(33)50-20/h8-10,17-23,25,28,37,41-42H,11-14H2,1-7H3/b15-8+/t17-,18-,19+,20+,21+,22+,23+,25-,28-,29+,30-,31-,32-,33-,34-,35-/m0/s1
SMILES C/C=C(C)/C(=O)O[C@H]1C[C@H]([C@]2(CO[C@@H]3[C@@H]2[C@@]21CO[C@@]([C@H]2[C@@](C)([C@@H]3O)[C@@]12[C@H]3C[C@@H]([C@]1(C)O2)[C@]1(C=CO[C@H]1O3)O)(C(=O)OC)O)C(=O)OC)OC(=O)C

  Calculated Properties

Physi-Chem Properties

Molecular Weight:   720.26 Volume:   670.289
?
Van der Waals volume.
Dense:   1.075 LogP:   1.142
?
The logarithm of the n-octanol/water distribution coefficients.
logD7.4:   1.611
?
The logarithm of the n-octanol/water distribution coefficient at pH=7.4.
LogS:   -3.021
?
The logarithm of aqueous solubility value.
Rotatable Bonds:   10.0 Rigid Bonds:   38.0
TPSA:   215.34
?
Topological Polar Surface Area.
H-Bond Acceptor:   16.0
H-Bond Donor:   3.0 Rings:   8.0
Heavy Atoms:   16.0

MedChem Properties

QED Drug-Likeness Score:   0.14 GASA:   1.0
?
GASA represents the probability of being difficult to synthesize, ranging from 0 to 1.
Synthetic Accessibility Score:   7.579 Fsp3:   0.771
MCE-18:   215.065
?
MCE-18 stands for medicinal chemistry evolution.MCE-18≥45 is considered a suitable value.
Lipinski Rule-of-5:   Accepted
Pfizer Rule:   Rejected GSK Rule:   Accepted
Golden Triangle Rule:   Accepted BMS Rule:   0
Chelating Alert:   0 PAINS Alert:   0
Colloidal aggregators:   0.483 Fluc inhibitor:   0.014
?
The fluc inhibitor value is the probability of being fLuc inhibitors, within the range of 0 to 1.
Blue fluorescence:   0.004
?
The blue fluorescence value is the probability of being blue fluorescence, within the range of 0 to 1
Green fluorescence:   0.004
?
The green fluorescence value is the probability of being green fluorescence, within the range of 0 to 1
Reactive compounds:   0.095 Promiscuous compounds:   0.682

ADMET Properties (ADMETlab3.0)

ADMET: Absorption

Caco-2 Permeability:   -5.47 MDCK Permeability:   -5.029
Pgp-inhibitor:   0.001 Pgp-substrate:   0.871
PAMPA:   0.999
?
The experimental data for Peff was logarithmically transformed (logPeff). Molecules with log Peff values below 2.0 were classified as low-permeability (Category 0), while those with log Peff values exceeding 2.5 were classified as high-permeability (Category 1).
Human Intestinal Absorption (HIA):   0.025
20% Bioavailability (F20%):   0.772 30% Bioavailability (F30%):   0.948
50% Bioavailability (F50%):   0.998

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):   0.002 MRP1:   0.999
Plasma Protein Binding (PPB):   66.665% Volume Distribution (VD):   -0.306
Fu: 29.028%
?
The fraction unbound in plasms.
OATP1B1 inhibitor:   0.973
OATP1B3 inhibitor:   0.87 BCRP inhibitor:   0.019
BSEP inhibitor:   0.467

ADMET: Metabolism

CYP1A2-inhibitor:   0.016 CYP1A2-substrate:   0.119
CYP2C19-inhibitor:   0.004 CYP2C19-substrate:   0.001
CYP2C9-inhibitor:   0.0 CYP2C9-substrate:   0.001
CYP2D6-inhibitor:   0.0 CYP2D6-substrate:   0.938
CYP3A4-inhibitor:   0.194 CYP3A4-substrate:   0.083
CYP2B6-substrate:   0.0 CYP2C8-inhibitor:   0.999
HLM stability:   0.99
?
Human liver microsomal (HLM) stability. Category 0: stable+ (HLM > 30 min); Category 1: unstable- (HLM ≤ 30 min). The output value is the probability of human liver microsomal instability, where a value closer to 1 indicates a higher likelihood of instability.

ADMET: Excretion

Clearance (CL):  2.826 Half-life (T1/2):  2.401

ADMET: Toxicity

hERG Blockers:  0.011 hERG Blockers (10um):  0.104
Human Hepatotoxicity (H-HT):  0.392 Drug-induced Liver Injury (DILI):  0.93
AMES Toxicity:  0.983 Rat Oral Acute Toxicity:  0.942
Maximum Recommended Daily Dose:  0.957 Skin Sensitization:  1.0
Carcinogencity:  0.463 Eye Corrosion:  0.0
Eye Irritation:  0.012 Respiratory Toxicity:  0.95
Drug-induced Neurotoxicity:  0.8 Ototoxicity:  0.905
Hematotoxicity:  0.591 Drug-induced Nephrotoxicity:  0.986
Genotoxicity:  0.997 RPMI-8226 Immunitoxicity:  0.547
A549 Cytotoxicity:  0.253 Hek293 Cytotoxicity:  0.31
BCF:   0.463
?
Bioconcentration factors are used for considering secondary poisoning potential and assessing risks to human health via the food chain. The unit is -log10[(mg/L)/(1000*MW)].
IGC50:   3.608
?
48 hour Tetrahymena pyriformis IGC50. The unit of IGC50 is -log10[(mg/L)/(1000*MW)].
LC50DM:   5.829
?
48 hour Daphnia magna LC50. The unit of LC50DM is -log10[(mg/L)/(1000*MW)].
LC50FM:   4.805
?
96 hour fathead minnow LC50. The unit of LC50FM is -log10[(mg/L)/(1000*MW)].

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO9112 Maytenus sp. Species Celastraceae Eukaryota n.a. n.a. n.a. PMID[10637057]
NPO33100 clerodendron sp. Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[12617583]
NPO10033 Turraea pubescens Species Meliaceae Eukaryota twig Dongfang, Hainan Province, China 2010-Mar PMID[23734701]
NPO10033 Turraea pubescens Species Meliaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO9112 Maytenus sp. Species Celastraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO10033 Turraea pubescens Species Meliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



  NP Quantity Composition/Concentration

Organism ID Organism Name Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



 Biological Activity

Molecular-level activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT72 Individual protein Solute carrier organic anion transporter family member 1B3 Homo sapiens Inhibition = 74.42 % PMID[19581457]
NPT73 Individual protein Solute carrier organic anion transporter family member 1B1 Homo sapiens Inhibition = 51.12 % PMID[22642560]

In vitro activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT113 Cell line RAW264.7 Mus musculus IC50 > 20000.0 nM PMID[23398362]
NPT116 Cell line HL-60 Homo sapiens IC50 < 10000.0 nM PMID[20619938]
NPT4520 Organism Lymantria dispar Lymantria dispar EC50 = 0.6 ug/g DrugMatrix in vivo data: Biochemistry
NPT776 Organism Spodoptera littoralis Spodoptera littoralis EC50 = 0.11 ug/g DrugMatrix in vivo data: Biochemistry
NPT3773 Organism Epilachna varivestis Epilachna varivestis Activity = 90.0 % PMID[15730244]
NPT3773 Organism Epilachna varivestis Epilachna varivestis Activity = 30.0 % PMID[14971898]
NPT3773 Organism Epilachna varivestis Epilachna varivestis Activity = 60.0 % PMID[26789657]
NPT1769 Organism Mythimna separata Mythimna separata EC50 = 579.43 nM PMID[17923492]
NPT1769 Organism Mythimna separata Mythimna separata EC50 = 0.58 ug.mL-1 PMID[15656657]
NPT776 Organism Spodoptera littoralis Spodoptera littoralis AFI = 99.0 % DOI[10.1016/S0040-4020(01)96211-8]
NPT776 Organism Spodoptera littoralis Spodoptera littoralis AFI = 100.0 % DOI[10.1016/S0040-4020(01)96211-8]
NPT849 Organism Plutella xylostella Plutella xylostella Activity = 10.1 % PMID[23030848]
NPT849 Organism Plutella xylostella Plutella xylostella Activity = 5.1 % PMID[20004577]
NPT849 Organism Plutella xylostella Plutella xylostella Activity = 2.1 % PMID[1800632]
NPT849 Organism Plutella xylostella Plutella xylostella Activity <= 2.0 % PMID[1800632]
NPT849 Organism Plutella xylostella Plutella xylostella Activity = 2.0 mm PMID[1800632]
NPT849 Organism Plutella xylostella Plutella xylostella Activity = 2.5 mm PMID[20035557]
NPT849 Organism Plutella xylostella Plutella xylostella Activity = 2.2 mm PMID[18348533]
NPT849 Organism Plutella xylostella Plutella xylostella Activity = 13.5 mm PMID[20035557]
NPT849 Organism Plutella xylostella Plutella xylostella Activity = 14.7 mm PubChem BioAssay data set
NPT849 Organism Plutella xylostella Plutella xylostella Activity = 14.8 mm PMID[10096858]
NPT849 Organism Plutella xylostella Plutella xylostella Activity = 0.013 mg PMID[20138519]
NPT849 Organism Plutella xylostella Plutella xylostella Activity = 0.012 mg PMID[20138519]
NPT849 Organism Plutella xylostella Plutella xylostella Activity = 0.016 mg PMID[16562846]
NPT849 Organism Plutella xylostella Plutella xylostella Activity = 66.2 % DrugMatrix in vitro pharmacology data
NPT849 Organism Plutella xylostella Plutella xylostella Activity = 75.2 % DrugMatrix in vitro pharmacology data
NPT849 Organism Plutella xylostella Plutella xylostella Activity = 61.6 % DrugMatrix in vitro pharmacology data
NPT6597 Organism Ostrinia furnacalis Ostrinia furnacalis Activity = 1.2 mg PMID[1336040]
NPT6597 Organism Ostrinia furnacalis Ostrinia furnacalis Activity = 7.8 mg PMID[20196571]
NPT6597 Organism Ostrinia furnacalis Ostrinia furnacalis Activity = 22.0 mg PMID[17341114]
NPT6597 Organism Ostrinia furnacalis Ostrinia furnacalis FDI = 59.9 % PMID[12502400]
NPT849 Organism Plutella xylostella Plutella xylostella AFC50 = 9.3 ug ml-1 PMID[19318121]
NPT722 Organism Athelia rolfsii Athelia rolfsii ED50 = 93.6 ppm PMID[20020916]
NPT722 Organism Athelia rolfsii Athelia rolfsii ED50 = 121.9 ppm PMID[19473028]
NPT722 Organism Athelia rolfsii Athelia rolfsii ED50 = 140.5 ppm PMID[8759172]
NPT529 Organism Rhizoctonia solani Rhizoctonia solani ED50 = 104.8 ppm PubChem BioAssay data set
NPT529 Organism Rhizoctonia solani Rhizoctonia solani ED50 = 132.2 ppm PubChem BioAssay data set
NPT529 Organism Rhizoctonia solani Rhizoctonia solani ED50 = 165.2 ppm PubChem BioAssay data set
NPT1769 Organism Mythimna separata Mythimna separata AFI = 43.8 % DOI[10.1584/jpestics.G11-47]
NPT1769 Organism Mythimna separata Mythimna separata AFI = 37.3 % DOI[10.1584/jpestics.G11-47]
NPT3915 Organism Helicoverpa armigera Helicoverpa armigera GI <= 80.0 % PMID[16643029]
NPT3915 Organism Helicoverpa armigera Helicoverpa armigera Inhibition <= 76.0 % PMID[19105653]
NPT3915 Organism Helicoverpa armigera Helicoverpa armigera EC50 = 0.4 ppm PMID[4020828]
NPT3915 Organism Helicoverpa armigera Helicoverpa armigera EC95 = 1.46 ppm PMID[23454511]
NPT3915 Organism Helicoverpa armigera Helicoverpa armigera EC50 = 0.26 ppm PMID[19459645]
NPT780 Organism Sitophilus zeamais Sitophilus zeamais EC50 = 57.0 ppm PMID[8377014]
NPT1637 Organism Cydia pomonella Cydia pomonella Activity = 0.0 n.a. PMID[6533259]
NPT1637 Organism Cydia pomonella Cydia pomonella Activity = 0.3 n.a. PMID[6533259]
NPT1637 Organism Cydia pomonella Cydia pomonella Activity = 100.0 % PMID[25237727]
NPT1637 Organism Cydia pomonella Cydia pomonella Activity = 70.0 % PMID[25237727]
NPT1637 Organism Cydia pomonella Cydia pomonella Activity = 76.7 % PMID[18163588]
NPT3915 Organism Helicoverpa armigera Helicoverpa armigera AFI = 86.47 % PMID[23961115]
NPT3915 Organism Helicoverpa armigera Helicoverpa armigera AFI = 75.88 % PMID[23961115]
NPT3915 Organism Helicoverpa armigera Helicoverpa armigera AFI = 64.13 % PMID[23961115]
NPT3915 Organism Helicoverpa armigera Helicoverpa armigera AFI = 53.5 % PMID[23961115]
NPT6307 Organism Amphimallon majalis Amphimallon majalis Activity = 4.0 % PMID[21761866]
NPT6307 Organism Amphimallon majalis Amphimallon majalis Activity = 1.1 % PMID[22148396]
NPT6307 Organism Amphimallon majalis Amphimallon majalis Activity = 15.8 % PMID[21761866]
NPT3062 Organism Spodoptera eridania Spodoptera eridania Activity = 90.0 % PMID[15730244]
NPT3062 Organism Spodoptera eridania Spodoptera eridania Activity = 60.0 % PMID[21105682]
NPT3062 Organism Spodoptera eridania Spodoptera eridania Activity = 30.0 % PMID[21105682]
NPT1175 Organism Spodoptera litura Spodoptera litura logEC50 = 0.25 n.a. DOI[10.1021/np970167e]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. IC50 = 20.3 ug.mL-1 PMID[15974620]
NPT2747 Organism Achaea janata Achaea janata ED50 = 0.72 microg/cm2 Open TG-GATES in vivo data: Organ Weight
NPT1175 Organism Spodoptera litura Spodoptera litura ED50 = 0.89 microg/cm2 PMID[17253840]
NPT450 Organism Meloidogyne incognita Meloidogyne incognita Activity = 21.0 % PMID[24930833]
NPT450 Organism Meloidogyne incognita Meloidogyne incognita Activity = 11.0 % PMID[12105963]
NPT3062 Organism Spodoptera eridania Spodoptera eridania AFI = 57.3 % PMID[12353636]
NPT3062 Organism Spodoptera eridania Spodoptera eridania AFI = 91.2 % PMID[12353636]
NPT3062 Organism Spodoptera eridania Spodoptera eridania AFI = 94.2 % PMID[12353636]
NPT3062 Organism Spodoptera eridania Spodoptera eridania AFI = 94.0 % PMID[12353636]
NPT1643 Organism Epilachna Epilachna AFI = 35.7 % PMID[12353636]
NPT1643 Organism Epilachna Epilachna AFI = 62.2 % PMID[12353636]
NPT1643 Organism Epilachna Epilachna AFI = 97.6 % PMID[12353636]
NPT23406 Organism Pieris rapae Pieris rapae FDI = 100.0 % DOI[10.1016/S0040-4020(02)00944-4]
NPT785 Organism Pieris brassicae Pieris brassicae AFI = 99.5 % DOI[10.1016/S0040-4020(03)00573-8]
NPT1175 Organism Spodoptera litura Spodoptera litura TIME = 235.2 hr PMID[16242271]
NPT1175 Organism Spodoptera litura Spodoptera litura TIME = 243.36 hr PMID[16242271]
NPT1175 Organism Spodoptera litura Spodoptera litura FDI = 15.62 % PMID[16242271]
NPT1175 Organism Spodoptera litura Spodoptera litura FDI = 12.59 % PMID[16242271]
NPT1175 Organism Spodoptera litura Spodoptera litura TIME = 391.2 hr PMID[16242271]
NPT1175 Organism Spodoptera litura Spodoptera litura TIME = 360.0 hr PMID[16242271]
NPT1643 Organism Epilachna Epilachna ED50 = 0.72 microg/cm2 PMID[10650082]
NPT5473 Organism Diaprepes abbreviatus Diaprepes abbreviatus Activity = 1.8 cm2 PMID[20329739]
NPT5473 Organism Diaprepes abbreviatus Diaprepes abbreviatus Activity = 0.74 cm2 PMID[20402524]
NPT5474 Organism Schistocerca americana Schistocerca americana Activity = 0.29 cm2 PMID[20146503]
NPT5474 Organism Schistocerca americana Schistocerca americana Activity = 0.4 cm2 PMID[21452899]
NPT846 Organism Cnaphalocrocis medinalis Cnaphalocrocis medinalis Activity = 12.36 % PMID[24487236]
NPT846 Organism Cnaphalocrocis medinalis Cnaphalocrocis medinalis ECI = 6.507 % DOI[10.1016/j.cropro.2005.01.009]
NPT846 Organism Cnaphalocrocis medinalis Cnaphalocrocis medinalis Activity = 52.72 % PMID[23252603]
NPT846 Organism Cnaphalocrocis medinalis Cnaphalocrocis medinalis Activity = 0.187 mg/mg/day PMID[18411318]
NPT846 Organism Cnaphalocrocis medinalis Cnaphalocrocis medinalis Activity = 0.0277 mg/mg/day PMID[24273638]
NPT846 Organism Cnaphalocrocis medinalis Cnaphalocrocis medinalis Activity = 0.427 mg/mg/day PMID[24273638]
NPT846 Organism Cnaphalocrocis medinalis Cnaphalocrocis medinalis FDI = 93.2 % DOI[10.1016/j.cropro.2005.01.009]
NPT1175 Organism Spodoptera litura Spodoptera litura TIME = 168.0 hr PMID[12617583]
NPT1175 Organism Spodoptera litura Spodoptera litura TIME = 172.8 hr PMID[12617583]
NPT1175 Organism Spodoptera litura Spodoptera litura Activity = 28.5 % PMID[9584394]
NPT1175 Organism Spodoptera litura Spodoptera litura Activity = 42.8 % PMID[16134928]
NPT1175 Organism Spodoptera litura Spodoptera litura Activity = 247.2 mg DrugMatrix in vivo data: Biochemistry
NPT1175 Organism Spodoptera litura Spodoptera litura TIME = 264.0 hr PMID[12617583]
NPT1175 Organism Spodoptera litura Spodoptera litura TIME = 333.6 hr PMID[12617583]
NPT1175 Organism Spodoptera litura Spodoptera litura Activity = 79.2 % PMID[17503850]
NPT1175 Organism Spodoptera litura Spodoptera litura AFC50 = 9.8 ug ml-1 PMID[19318121]
NPT6385 Organism Rotylenchulus reniformis Rotylenchulus reniformis EC50 = 119.1 ppm PubChem BioAssay data set
NPT6385 Organism Rotylenchulus reniformis Rotylenchulus reniformis EC50 = 151.9 ppm PMID[16472241]
NPT6385 Organism Rotylenchulus reniformis Rotylenchulus reniformis EC50 = 193.9 ppm PMID[18710917]
NPT1643 Organism Epilachna Epilachna ED50 = 0.59 ug PMID[15787455]
NPT2747 Organism Achaea janata Achaea janata Activity = 98.8 % PMID[19487444]
NPT2747 Organism Achaea janata Achaea janata Activity = 0.0 % PMID[24387347]
NPT2747 Organism Achaea janata Achaea janata Activity = 696.4 mg PMID[9392875]
NPT2747 Organism Achaea janata Achaea janata TIME = 247.2 hr PMID[19969457]
NPT1175 Organism Spodoptera litura Spodoptera litura Activity = 62.5 % PMID[22934671]
NPT1175 Organism Spodoptera litura Spodoptera litura TIME = 223.2 hr PMID[11429258]
NPT1175 Organism Spodoptera litura Spodoptera litura TIME = 386.4 hr PMID[11429258]
NPT1175 Organism Spodoptera litura Spodoptera litura TIME = 129.6 hr PMID[11429258]
NPT1175 Organism Spodoptera litura Spodoptera litura TIME = 79.2 hr PMID[11429258]
NPT1175 Organism Spodoptera litura Spodoptera litura TIME = 98.4 hr PMID[11429258]
NPT1175 Organism Spodoptera litura Spodoptera litura TIME = 76.8 hr PMID[11429258]
NPT1175 Organism Spodoptera litura Spodoptera litura Activity = 95.4 % DrugMatrix in vitro pharmacology data
NPT1175 Organism Spodoptera litura Spodoptera litura Activity = 94.8 % PMID[15497935]
NPT1175 Organism Spodoptera litura Spodoptera litura Activity = 91.6 % PMID[24463437]
NPT785 Organism Pieris brassicae Pieris brassicae Activity = 99.5 % PMID[18715034]
NPT2747 Organism Achaea janata Achaea janata Activity = 100.0 % PMID[22061825]
NPT2747 Organism Achaea janata Achaea janata AFI = 100.0 % PMID[19969457]
NPT1175 Organism Spodoptera litura Spodoptera litura Activity = 83.3 % PMID[20045319]
NPT1175 Organism Spodoptera litura Spodoptera litura Activity = 85.5 % PMID[26341132]
NPT1175 Organism Spodoptera litura Spodoptera litura Activity = 100.0 % PMID[16038557]
NPT454 Organism Tenebrio molitor Tenebrio molitor Inhibition = 29.57 % PMID[20585132]
NPT1175 Organism Spodoptera litura Spodoptera litura AFI = 79.41 % DOI[10.1016/j.jssas.2011.10.002]
NPT1175 Organism Spodoptera litura Spodoptera litura AFI = 70.49 % DOI[10.1016/j.jssas.2011.10.002]
NPT1175 Organism Spodoptera litura Spodoptera litura AFI = 49.67 % DOI[10.1016/j.jssas.2011.10.002]
NPT1175 Organism Spodoptera litura Spodoptera litura AFI = 61.31 % DOI[10.1016/j.jssas.2011.10.002]
NPT1175 Organism Spodoptera litura Spodoptera litura AFI = 88.02 % PMID[23961115]
NPT1175 Organism Spodoptera litura Spodoptera litura AFI = 78.66 % PMID[23961115]
NPT1175 Organism Spodoptera litura Spodoptera litura AFI = 70.08 % PMID[23961115]
NPT1175 Organism Spodoptera litura Spodoptera litura AFI = 60.12 % PMID[23961115]
NPT4388 Organism Tuta absoluta Tuta absoluta TIME = 0.5593 hr DOI[10.1016/j.cropro.2012.12.021]
NPT4388 Organism Tuta absoluta Tuta absoluta TIME = 0.6453 hr DOI[10.1016/j.cropro.2012.12.021]
NPT4388 Organism Tuta absoluta Tuta absoluta Ratio = 1.96 n.a. PMID[11575949]
NPT4388 Organism Tuta absoluta Tuta absoluta Ratio = 1.8 n.a. PMID[8176712]
NPT4388 Organism Tuta absoluta Tuta absoluta Ratio = 1.65 n.a. PMID[8176712]
NPT4388 Organism Tuta absoluta Tuta absoluta LC10 = 0.97 mgAi/L DOI[10.1016/j.cropro.2012.12.021]
NPT4388 Organism Tuta absoluta Tuta absoluta LC10 = 1.59 mgAi/L DOI[10.1016/j.cropro.2012.12.021]
NPT1194 Organism Earias vitella Earias vitella Activity = 25.0 % PMID[24893224]
NPT1194 Organism Earias vitella Earias vitella Activity = 37.0 % PMID[22301215]
NPT1194 Organism Earias vitella Earias vitella Activity = 59.2 mg PubChem BioAssay data set
NPT1194 Organism Earias vitella Earias vitella Activity = 79.2 % PMID[17503850]
NPT2720 Organism Nilaparvata lugens Nilaparvata lugens AFC50 = 7.5 ug ml-1 PMID[19318121]
NPT1403 Organism Felis catus Felis catus Reduction = 53.0 % PMID[11262075]
NPT1579 Organism Heliothis virescens Heliothis virescens Activity = 60.0 % PMID[18558745]
NPT5551 Organism Sogatella furcifera Sogatella furcifera AFC50 = 7.0 ug ml-1 PMID[19318121]
NPT1419 Organism Tribolium castaneum Tribolium castaneum EC50 = 1.0 ppm PMID[8377014]
NPT1419 Organism Tribolium castaneum Tribolium castaneum EC50 = 3.0 ppm PMID[11000019]
NPT26961 Organism Spilarctia obliqua Spilarctia obliqua FDI = 100.0 % PMID[15026059]
NPT6276 Organism Popillia japonica Popillia japonica Activity = 74.3 % PMID[21761866]
NPT6276 Organism Popillia japonica Popillia japonica Activity = 64.1 % PMID[22148396]
NPT6276 Organism Popillia japonica Popillia japonica Activity = 87.2 % PMID[19453174]

In vivo activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT776 Organism Spodoptera littoralis Spodoptera littoralis mortality = 83.5 % DOI[10.1016/j.cropro.2010.11.022]
NPT1367 Organism Bemisia tabaci Bemisia tabaci mortality = 82.8 % DOI[10.1016/j.cropro.2010.11.022]
NPT849 Organism Plutella xylostella Plutella xylostella Survival < 60.0 % DrugMatrix in vitro pharmacology data
NPT849 Organism Plutella xylostella Plutella xylostella Survival = 50.0 % DrugMatrix in vitro pharmacology data
NPT1637 Organism Cydia pomonella Cydia pomonella mortality = 100.0 % PMID[10637057]
NPT1637 Organism Cydia pomonella Cydia pomonella mortality = 50.0 % PMID[10637057]
NPT1637 Organism Cydia pomonella Cydia pomonella mortality = 66.7 % PMID[10637057]
NPT3915 Organism Helicoverpa armigera Helicoverpa armigera mortality = 100.0 % PMID[23961115]
NPT3915 Organism Helicoverpa armigera Helicoverpa armigera mortality = 95.0 % PMID[23961115]
NPT3915 Organism Helicoverpa armigera Helicoverpa armigera mortality = 61.25 % PMID[23961115]
NPT3915 Organism Helicoverpa armigera Helicoverpa armigera mortality = 38.75 % PMID[23961115]
NPT2747 Organism Achaea janata Achaea janata mortality = 93.6 % PMID[19530696]
NPT1175 Organism Spodoptera litura Spodoptera litura mortality = 84.0 % PMID[19530696]
NPT785 Organism Pieris brassicae Pieris brassicae mortality = 100.0 % DOI[10.1016/S0040-4020(03)00573-8]
NPT1175 Organism Spodoptera litura Spodoptera litura mortality = 33.21 % PMID[16242271]
NPT1175 Organism Spodoptera litura Spodoptera litura mortality = 40.0 % PMID[16242271]
NPT1175 Organism Spodoptera litura Spodoptera litura mortality = 64.0 % PMID[16242271]
NPT1175 Organism Spodoptera litura Spodoptera litura mortality = 28.0 % DOI[10.1016/j.jssas.2011.10.002]
NPT1175 Organism Spodoptera litura Spodoptera litura mortality = 78.0 % PMID[12617583]
NPT2747 Organism Achaea janata Achaea janata mortality = 0.0 % PMID[19969457]
NPT2747 Organism Achaea janata Achaea janata mortality = 100.0 % PMID[19969457]
NPT1175 Organism Spodoptera litura Spodoptera litura mortality = 98.28 % DOI[10.1016/j.jssas.2011.10.002]
NPT1175 Organism Spodoptera litura Spodoptera litura mortality = 85.33 % DOI[10.1016/j.jssas.2011.10.002]
NPT1175 Organism Spodoptera litura Spodoptera litura mortality = 100.0 % DOI[10.1016/j.jssas.2011.10.002]
NPT1175 Organism Spodoptera litura Spodoptera litura mortality = 57.33 % DOI[10.1016/j.jssas.2011.10.002]
NPT1175 Organism Spodoptera litura Spodoptera litura mortality = 93.55 % DOI[10.1016/j.jssas.2011.10.002]
NPT1175 Organism Spodoptera litura Spodoptera litura mortality = 70.21 % DOI[10.1016/j.jssas.2011.10.002]
NPT1175 Organism Spodoptera litura Spodoptera litura mortality = 73.75 % PMID[23961115]
NPT1175 Organism Spodoptera litura Spodoptera litura mortality = 52.5 % PMID[23961115]
NPT4388 Organism Tuta absoluta Tuta absoluta Survival < 4.0 % DOI[10.1016/0960-894X(96)00418-0]
NPT4388 Organism Tuta absoluta Tuta absoluta Survival = 25.0 % PMID[10425118]
NPT530 Organism Caenorhabditis elegans Caenorhabditis elegans mortality = 50.0 % PMID[12822931]
NPT530 Organism Caenorhabditis elegans Caenorhabditis elegans mortality = 56.0 % PMID[12822931]
NPT176 Organism Artemia salina Artemia salina mortality = 12.5 % PMID[23734701]
NPT176 Organism Artemia salina Artemia salina mortality = 59.6 % PMID[23734701]
NPT176 Organism Artemia salina Artemia salina mortality = 81.7 % PMID[23734701]
NPT26957 Organism Macrosteles quadripunctulatus Macrosteles quadripunctulatus mortality = 30.0 % DOI[10.1016/j.cropro.2010.11.022]
NPT4696 Organism Brontispa longissima Brontispa longissima mortality = 63.33 % DOI[10.1584/jpestics.G10-52]
NPT4696 Organism Brontispa longissima Brontispa longissima mortality = 56.67 % DOI[10.1584/jpestics.G10-52]
NPT4696 Organism Brontispa longissima Brontispa longissima mortality = 46.67 % DOI[10.1584/jpestics.G10-52]
NPT4696 Organism Brontispa longissima Brontispa longissima mortality = 20.0 % DOI[10.1584/jpestics.G10-52]
NPT4696 Organism Brontispa longissima Brontispa longissima mortality = 10.0 % DOI[10.1584/jpestics.G10-52]
NPT4696 Organism Brontispa longissima Brontispa longissima mortality = 3.33 % DOI[10.1584/jpestics.G10-52]





 Experimental ADME

Experiment Model Experiment Tissue ADME Type ADME Relation ADME Value ADME Unit Reference





 Experimental Toxicity

Quantitative toxicity

Experiment Model Experiment Organism Toxicity Type Toxicity Relation Toxicity Value Toxicity Unit Reference
- Spodoptera litura LC50 = 127.5 ppm PMID[19226154]
- Spodoptera litura LC50 = 133.89 ppm PMID[16723227]
- Spodoptera litura LC50 = 118.8 ppm PMID[17004718]
- Spodoptera litura LC50 = 18.89 microg/cm2 PMID[25238284]
- Spodoptera litura LC90 = 3278.46 ppm PMID[16723227]
- Spodoptera litura LC90 = 412.78 ppm PMID[11931626]
- Epilachna LD50 = 1.24 microg/cm2 PMID[17402783]
- Epilachna LT50 = 86.98 hr PMID[12517097]
- Epilachna LT50 = 115.06 hr PMID[12517097]
- Epilachna LT50 = 146.04 hr PMID[12517097]
- Epilachna LT50 = 151.91 hr PMID[12517097]
- Achaea janata LD50 = 0.67 microg/cm2 PMID[8277312]
- Achaea janata LC50 = 21.3 microg/cm2 PMID[20038128]
- Rattus norvegicus LD50 > 3540.0 mg.kg-1 PMID[18443122]
- Helicoverpa armigera LC50 = 186.16 ppm PMID[22647719]
- Tuta absoluta LC50 = 10.09 mgAi/L DOI[10.1016/0960-894X(96)00418-0]
- Tuta absoluta LC50 = 5.62 mgAi/L PMID[8176712]
- Tuta absoluta LC90 = 64.06 mgAi/L PMID[8176712]
- Tuta absoluta LC90 = 32.71 mgAi/L PMID[8176712]
- Spodoptera littoralis LC50 = 8.2 ppm PMID[25856683]
- Spodoptera littoralis LC50 = 0.04 ppm PMID[15165132]
- Spodoptera littoralis LC50 = 6.1 ug/g PMID[25700232]
- Plutella xylostella LD50 = 0.87 mg.kg-1 PMID[17438052]
- Plutella xylostella LD50 = 1.28 mg.kg-1 PMID[17403996]
- Plutella xylostella LD50 = 4.12 mg.kg-1 PMID[17438052]
- Plutella xylostella LD50 = 7.04 mg.kg-1 PMID[17438052]

Common Abbreviations:
LC: Lethal Concentration; LD: Lethal Dose; LT:Lethal Time; NOAEL: No-observed-adverse-effect Level; BMDL: Benchmark Dose Lower Confidence Limit; BMD: Benchmark Dose; BMC:Benchmark Concentration; LOAEL: Lowest Observed Adverse Effect Level; RfD:Reference Dose; RfC:Reference Concentration; MRL: Minimal Risk Level; MEG: Maximum Exposure Guideline; PAC: Protective Action Criteria

Categorical toxicity labels

Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption
Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP toxicity records from domain-specific databases. These databases include:
ToxValDB: a curated database that compiles quantitative toxicity values for chemicals from diverse public sources to support toxicological research and risk assessment.
TOXRIC: a comprehensive, free-to-access, online database providing toxicological/feature data. The toxicity labels are retrieved from this database. [PMID: 36400569]


  Chemically structural similarity

Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes approximately 50,000 NPs with experimentally-derived bioactivity available in NPASS)

Similarity is measured using the Tanimoto coefficient (Tc) , which compares the binary fingerprints of two molecules. Tc is calculated as the intersection divided by the union of '1' bits in the fingerprints, ranging from 0 to 1, with 1 indicating highest similarity.

●  The left chart: Distribution of similarity level between NPC475462 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.5 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC16729
1.0 High Similarity NPC120958
0.8 Intermediate Similarity NPC48813
0.7812 Intermediate Similarity NPC48414
0.7732 Intermediate Similarity NPC5153
0.7263 Intermediate Similarity NPC256618
0.7071 Intermediate Similarity NPC219058
0.6832 Remote Similarity NPC42206
0.6731 Remote Similarity NPC471172
0.6569 Remote Similarity NPC194854
0.619 Remote Similarity NPC601017
0.619 Remote Similarity NPC601069
0.619 Remote Similarity NPC608590
0.5192 Remote Similarity NPC475376

Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC475462 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.5 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
NPD

Bioactivity similarity

  Bioactivity similarity

Similar Natural Products in NPASS

Similarity level is defined by Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.
Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data