NPASS Compound

Structure

NPC4671 OpenBabel06302215282D 29 32 0 0 1 0 0 0 0 0999 V2000 4.7447 1.4627 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 3.7698 1.4627 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 3.2824 0.6185 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 3.2824 2.3070 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0 3.7698 3.1513 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 2.3075 2.3070 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1.8201 1.4628 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 0.8452 1.4628 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0 0.3578 2.3071 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 0.8452 0.4879 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0 1.6891 -0.0000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 1.6891 -0.9753 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.0000 -0.9753 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0 -0.8452 -1.4632 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.8452 -2.4391 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.6904 -2.9270 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.5355 -2.4390 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0 -3.3801 -2.9269 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -4.2247 -2.4390 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0 -4.2246 -1.4631 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.3801 -0.9752 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.5355 -1.4632 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0 -2.5355 -0.4632 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.6903 -0.9752 0.0000 C 0 0 1 0 0 0 0 0 0 0 0 0 -1.6903 0.0000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.8452 0.4879 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 0.0000 -0.0000 0.0000 C 0 0 2 0 0 0 0 0 0 0 0 0 0.0000 1.0000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 -5.0908 -2.9389 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 0 0 0 2 3 1 0 0 0 0 2 4 1 0 0 0 0 4 5 1 6 0 0 0 4 6 1 0 0 0 0 6 7 1 0 0 0 0 7 8 1 0 0 0 0 8 9 1 6 0 0 0 10 8 1 1 0 0 0 10 11 1 0 0 0 0 10 27 1 0 0 0 0 11 12 1 0 0 0 0 13 12 1 1 0 0 0 13 14 1 0 0 0 0 13 27 1 0 0 0 0 14 24 1 0 0 0 0 14 15 2 0 0 0 0 15 16 1 0 0 0 0 17 16 1 1 0 0 0 17 18 1 0 0 0 0 17 22 1 0 0 0 0 18 19 1 0 0 0 0 19 20 1 0 0 0 0 19 29 1 1 0 0 0 20 21 1 0 0 0 0 21 22 1 0 0 0 0 22 23 1 1 0 0 0 22 24 1 0 0 0 0 24 25 1 1 0 0 0 25 26 1 0 0 0 0 26 27 1 0 0 0 0 27 28 1 1 0 0 0 M END $$$$

Physi-Chem Properties

Molecular Weight:	400.37
Volume:	464.772
LogP:	7.654
LogD:	6.672
LogS:	-6.821
# Rotatable Bonds:	5
TPSA:	20.23
# H-Bond Aceptor:	1
# H-Bond Donor:	1
# Rings:	4
# Heavy Atoms:	1

MedChem Properties

QED Drug-Likeness Score:	0.47
Synthetic Accessibility Score:	4.519
Fsp3:	0.929
Lipinski Rule-of-5:	Accepted
Pfizer Rule:	Rejected
GSK Rule:	Rejected
BMS Rule:	0
Golden Triangle Rule:	Rejected
Chelating Alert:	0
PAINS Alert:	0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:	-4.627
MDCK Permeability:	3.6577323044184595e-05
Pgp-inhibitor:	0.449
Pgp-substrate:	0.183
Human Intestinal Absorption (HIA):	0.004
20% Bioavailability (F20%):	0.985
30% Bioavailability (F30%):	0.739

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):	0.023
Plasma Protein Binding (PPB):	96.22003173828125%
Volume Distribution (VD):	1.224
Pgp-substrate:	1.3031096458435059%

ADMET: Metabolism

CYP1A2-inhibitor:	0.144
CYP1A2-substrate:	0.188
CYP2C19-inhibitor:	0.124
CYP2C19-substrate:	0.911
CYP2C9-inhibitor:	0.232
CYP2C9-substrate:	0.08
CYP2D6-inhibitor:	0.031
CYP2D6-substrate:	0.514
CYP3A4-inhibitor:	0.737
CYP3A4-substrate:	0.51

ADMET: Excretion

Clearance (CL):	9.283
Half-life (T1/2):	0.047

ADMET: Toxicity

hERG Blockers:	0.219
Human Hepatotoxicity (H-HT):	0.141
Drug-inuced Liver Injury (DILI):	0.052
AMES Toxicity:	0.002
Rat Oral Acute Toxicity:	0.024
Maximum Recommended Daily Dose:	0.349
Skin Sensitization:	0.94
Carcinogencity:	0.023
Eye Corrosion:	0.988
Eye Irritation:	0.819
Respiratory Toxicity:	0.451

Download Data

Data Type	Select
General Info & Identifiers & Properties
Structure MOL file
Source Organisms
Biological Activities
Similar NPs/Drugs

Natural Product: NPC4671

Natural Product ID:	NPC4671
*Common Name:**	PUGBZUWUTZUUCP-ZRKHGVCBSA-N
IUPAC Name:	n.a.
Synonyms:
Standard InCHIKey:	PUGBZUWUTZUUCP-ZRKHGVCBSA-N
Standard InCHI:	InChI=1S/C28H48O/c1-18(2)19(3)7-8-20(4)24-11-12-25-23-10-9-21-17-22(29)13-15-27(21,5)26(23)14-16-28(24,25)6/h10,18-22,24-26,29H,7-9,11-17H2,1-6H3/t19-,20+,21-,22-,24+,25-,26-,27-,28+/m0/s1
SMILES:	CC(C)[C@@H](C)CC[C@@H](C)[C@H]1CC[C@H]2C3=CC[C@H]4C[C@H](CC[C@]4(C)[C@H]3CC[C@]12C)O
Synthetic Gene Cluster:	n.a.
ChEMBL Identifier:	n.a.
PubChem CID:	5283646
Chemical Classification:**	CHEMONTID:0000000 [Organic compounds] [CHEMONTID:0000012] Lipids and lipid-like molecules [CHEMONTID:0000258] Steroids and steroid derivatives [CHEMONTID:0003567] Ergostane steroids [CHEMONTID:0001403] Ergosterols and derivatives

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

Species Source

Organism ID	Organism Name	Taxonomy Level	Family	SuperKingdom	Isolation Part	Collection Location	Collection Time	Reference
NPO17024	Vitis vinifera	Species	Vitaceae	Eukaryota	n.a.	Nigeria(latitude 80°N and longitude 4°E)	2005; 2006	DOI[10.1002/ejlt.201000080]
NPO17024	Vitis vinifera	Species	Vitaceae	Eukaryota	n.a.	n.a.	n.a.	DOI[10.1007/s11306-010-0259-y]
NPO17024	Vitis vinifera	Species	Vitaceae	Eukaryota	n.a.	n.a.	n.a.	DOI[10.1007/s11306-014-0638-x]
NPO17024	Vitis vinifera	Species	Vitaceae	Eukaryota	n.a.	n.a.	n.a.	DOI[10.1007/s11746-997-0093-1]
NPO17024	Vitis vinifera	Species	Vitaceae	Eukaryota	n.a.	n.a.	n.a.	DOI[10.1016/j.phytol.2008.07.007]
NPO17024	Vitis vinifera	Species	Vitaceae	Eukaryota	Seeds	Plovdiv, Plovdiv region in South Bulgaria		DOI[10.1051/CTV/20163101031]
NPO13212	Maytenus amazonica	Species	Celastraceae	Eukaryota	n.a.	n.a.	n.a.	PMID[10096852]
NPO30270	Cordyceps sinensis	Species	Cordycipitaceae	Eukaryota	n.a.	mycelium	n.a.	PMID[10423860]
NPO17024	Vitis vinifera	Species	Vitaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[11170689]
NPO17024	Vitis vinifera	Species	Vitaceae	Eukaryota	n.a.	leaf	n.a.	PMID[11312782]
NPO17024	Vitis vinifera	Species	Vitaceae	Eukaryota	n.a.	fruit	n.a.	PMID[11312782]
NPO17024	Vitis vinifera	Species	Vitaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[11408943]
NPO17024	Vitis vinifera	Species	Vitaceae	Eukaryota	n.a.	fruit	n.a.	PMID[12105962]
NPO30270	Cordyceps sinensis	Species	Cordycipitaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[15863936]
NPO21746	Streptomyces peucetius	Species	Streptomycetaceae	Bacteria	n.a.	n.a.	n.a.	PMID[15977277]
NPO22075	Kadsura philippinensis	Species	Schisandraceae	Eukaryota	n.a.	leaf	n.a.	PMID[16018647]
NPO22075	Kadsura philippinensis	Species	Schisandraceae	Eukaryota	n.a.	stem	n.a.	PMID[16018647]
NPO22075	Kadsura philippinensis	Species	Schisandraceae	Eukaryota	n.a.	aerial part	n.a.	PMID[16268562]
NPO22075	Kadsura philippinensis	Species	Schisandraceae	Eukaryota	n.a.	n.a.	n.a.	PMID[16792420]
NPO15026	Saprosma fragrans	Species	Rubiaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[16824761]
NPO22075	Kadsura philippinensis	Species	Schisandraceae	Eukaryota	n.a.	n.a.	n.a.	PMID[17608535]
NPO17024	Vitis vinifera	Species	Vitaceae	Eukaryota	n.a.	Esuela Tecnica Superior de Ingenieros Agrónomos de Albacete	2007	PMID[19256538]
NPO20232	Gnetum gnemonoides	Species	Gnetaceae	Eukaryota	bark	n.a.	n.a.	PMID[20192242]
NPO17024	Vitis vinifera	Species	Vitaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[20826702]
NPO21746	Streptomyces peucetius	Species	Streptomycetaceae	Bacteria	n.a.	n.a.	n.a.	PMID[21667925]
NPO30270	Cordyceps sinensis	Species	Cordycipitaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[21848266]
NPO30270	Cordyceps sinensis	Species	Cordycipitaceae	Eukaryota	n.a.	mycelium	n.a.	PMID[21848266]
NPO17024	Vitis vinifera	Species	Vitaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[22537213]
NPO17024	Vitis vinifera	Species	Vitaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[23759170]
NPO16709	Clivia miniata	Species	Amaryllidaceae	Eukaryota	n.a.	leaf	n.a.	PMID[24221429]
NPO17024	Vitis vinifera	Species	Vitaceae	Eukaryota	Stalks	n.a.	n.a.	PMID[24521157]
NPO17024	Vitis vinifera	Species	Vitaceae	Eukaryota	Seeds	Benedictine Pannonhalma Archabbey, Hungary		PMID[29803478]
NPO17024	Vitis vinifera	Species	Vitaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[31433178]
NPO16709	Clivia miniata	Species	Amaryllidaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[7153775]
NPO17024	Vitis vinifera	Species	Vitaceae	Eukaryota	Leaf	n.a.	n.a.	Database[FooDB]
NPO17024	Vitis vinifera	Species	Vitaceae	Eukaryota	Leaf Essent. Oil	n.a.	n.a.	Database[FooDB]
NPO17024	Vitis vinifera	Species	Vitaceae	Eukaryota	Plant	n.a.	n.a.	Database[FooDB]
NPO17024	Vitis vinifera	Species	Vitaceae	Eukaryota	Seed	n.a.	n.a.	Database[FooDB]
NPO17024	Vitis vinifera	Species	Vitaceae	Eukaryota	Stem	n.a.	n.a.	Database[FooDB]
NPO17024	Vitis vinifera	Species	Vitaceae	Eukaryota		n.a.	n.a.	Database[FooDB]
NPO17024	Vitis vinifera	Species	Vitaceae	Eukaryota	Fruits	n.a.		Database[FooDB]
NPO17024	Vitis vinifera	Species	Vitaceae	Eukaryota	Fruit	n.a.	n.a.	Database[FooDB]
NPO21809	Verbascum wiedemannianum	Species	Scrophulariaceae	Eukaryota	n.a.	n.a.	n.a.	Database[HerDing]
NPO17024	Vitis vinifera	Species	Vitaceae	Eukaryota	n.a.	n.a.	n.a.	Database[HerDing]
NPO17458	Sparganium stoloniferum	Species	Typhaceae	Eukaryota	n.a.	n.a.	n.a.	Database[HerDing]
NPO30270	Cordyceps sinensis	Species	Cordycipitaceae	Eukaryota	n.a.	n.a.	n.a.	Database[HerDing]
NPO16709	Clivia miniata	Species	Amaryllidaceae	Eukaryota	n.a.	n.a.	n.a.	Database[HerDing]
NPO17873	Adonis vernalis	Species	Ranunculaceae	Eukaryota	n.a.	n.a.	n.a.	Database[HerDing]
NPO17024	Vitis vinifera	Species	Vitaceae	Eukaryota	n.a.	n.a.	n.a.	Database[MetaboLights]
NPO27451	Ophiocordyceps sinensis	Species	Ophiocordycipitaceae	Eukaryota	n.a.	n.a.	n.a.	Database[TCMID]
NPO17458	Sparganium stoloniferum	Species	Typhaceae	Eukaryota	n.a.	n.a.	n.a.	Database[TCMID]
NPO21809	Verbascum wiedemannianum	Species	Scrophulariaceae	Eukaryota	n.a.	n.a.	n.a.	Database[TCMID]
NPO16709	Clivia miniata	Species	Amaryllidaceae	Eukaryota	n.a.	n.a.	n.a.	Database[TCMID]
NPO17873	Adonis vernalis	Species	Ranunculaceae	Eukaryota	n.a.	n.a.	n.a.	Database[TCMID]
NPO20232	Gnetum gnemonoides	Species	Gnetaceae	Eukaryota	n.a.	n.a.	n.a.	Database[TCMID]
NPO17024	Vitis vinifera	Species	Vitaceae	Eukaryota	n.a.	n.a.	n.a.	Database[TCMID]
NPO2727	Actaea simplex	Species	Ranunculaceae	Eukaryota	n.a.	n.a.	n.a.	Database[TCMID]
NPO30270	Cordyceps sinensis	Species	Cordycipitaceae	Eukaryota	n.a.	n.a.	n.a.	Database[TCM_Taiwan]
NPO17873	Adonis vernalis	Species	Ranunculaceae	Eukaryota	n.a.	n.a.	n.a.	Database[TCM_Taiwan]
NPO17458	Sparganium stoloniferum	Species	Typhaceae	Eukaryota	n.a.	n.a.	n.a.	Database[TCM_Taiwan]
NPO17024	Vitis vinifera	Species	Vitaceae	Eukaryota	n.a.	n.a.	n.a.	Database[TCM_Taiwan]
NPO17458	Sparganium stoloniferum	Species	Typhaceae	Eukaryota	n.a.	n.a.	n.a.	Database[TM-MC]
NPO27451	Ophiocordyceps sinensis	Species	Ophiocordycipitaceae	Eukaryota	n.a.	n.a.	n.a.	Database[TM-MC]
NPO2727	Actaea simplex	Species	Ranunculaceae	Eukaryota	n.a.	n.a.	n.a.	Database[TM-MC]
NPO16709	Clivia miniata	Species	Amaryllidaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO15089	Stylocheilus longicaudus	Species	Aplysiidae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO21809	Verbascum wiedemannianum	Species	Scrophulariaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO2727	Actaea simplex	Species	Ranunculaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO15026	Saprosma fragrans	Species	Rubiaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO17272	Cotoneaster simonsii	Species	Rosaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO15346	Remijia bicolorata	Species	Rubiaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO27451	Ophiocordyceps sinensis	Species	Ophiocordycipitaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO20232	Gnetum gnemonoides	Species	Gnetaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO17873	Adonis vernalis	Species	Ranunculaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO21746	Streptomyces peucetius	Species	Streptomycetaceae	Bacteria	n.a.	n.a.	n.a.	Database[UNPD]
NPO22075	Kadsura philippinensis	Species	Schisandraceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO17024	Vitis vinifera	Species	Vitaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO13212	Maytenus amazonica	Species	Celastraceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO10585	Yarrowia lipolytica	Species	Dipodascaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO9507	Agathosma mundtii	Species	Rutaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO12310	Viburnum orientale	Species	Adoxaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO17458	Sparganium stoloniferum	Species	Typhaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
☉ UNPD: Universal Natural Products Database [PMID: 23638153].
☉ StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
☉ TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
☉ TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
☉ TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
☉ TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
☉ HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
☉ MetaboLights: a metabolomics database [PMID: 27010336].
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

NP Quantity Composition/Concentration

Organism ID	NP ID	Organism Material Preparation	Organism Part	NP Quantity (Standard)	NP Quantity (Minimum)	NP Quantity (Maximum)	Quantity Unit	Reference
NPO17024	NPC4671	ISO 659, 2009	Seeds	1.1 ± 0.1	n.a.	n.a.	%	DOI[10.1051/CTV/20163101031]
NPO17024	NPC4671	ISO 659, 2009	Seeds	1.5 ± 0.1	n.a.	n.a.	%	DOI[10.1051/CTV/20163101031]
NPO17024	NPC4671	ISO 659, 2009	Seeds	1.8 ± 0.1	n.a.	n.a.	%	DOI[10.1051/CTV/20163101031]

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
☉ DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
☉ PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

Biological Activity

Target ID	Target Type	Target Name	Target Organism	Activity Type	Activity Relation	Value	Unit	Reference

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

● The left chart: Distribution of similarity level between NPC4671 and all remaining natural products in the NPASS database.
● The right table: Most similar natural products (Tc>=0.56 or Top200).

range	Tanimoto Coefficient
0-0.1	154
0.1-0.2	1427
0.2-0.3	8485
0.3-0.4	15254
0.4-0.5	6610
0.5-0.6	5399
0.6-0.7	3769
0.7-0.8	1150
0.8-0.85	276
0.85-0.9	91
0.9-0.95	57
0.95-1	25

Similarity Score	Similarity Level	Natural Product ID

Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

● The left chart: Distribution of similarity level between NPC4671 and all drugs/candidates.
● The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

range	Tanimoto Coefficient
0-0.1	161
0.1-0.2	1696
0.2-0.3	4555
0.3-0.4	1940
0.4-0.5	383
0.5-0.6	150
0.6-0.7	149
0.7-0.8	87
0.8-0.85	13
0.85-0.9	13
0.9-0.95	1
0.95-1	2

Similarity Score	Similarity Level	Drug ID	Developmental Stage

Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
☉ A: chemistry similarity;
☉ B: biological targets similarity;
☉ C: networks similarity;
☉ D: cell-based bioactivity similarity;
☉ E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity

B: biological targets similarity

C: networks similarity

D: cell-based bioactivity similarity

E: similarity based on clinical data