Molecular Weight:   | 576.44 |
Volume:   | 621.239 |
LogP:   | 5.97 |
LogD:   | 5.315 |
LogS:   | -4.432 |
# Rotatable Bonds:   | 9 |
TPSA:   | 99.38 |
# H-Bond Aceptor:   | 6 |
# H-Bond Donor:   | 4 |
# Rings:   | 5 |
# Heavy Atoms:   | 6 |
QED Drug-Likeness Score:   | 0.257 |
Synthetic Accessibility Score:   | 4.99 |
Fsp3:   | 0.943 |
Lipinski Rule-of-5:   | Rejected |
Pfizer Rule:   | Accepted |
GSK Rule:   | Rejected |
BMS Rule:   | 0 |
Golden Triangle Rule:   | Rejected |
Chelating Alert:   | 0 |
PAINS Alert:   | 0 |
Caco-2 Permeability:   | -4.785 |
MDCK Permeability:   | 2.0540886907838285e-05 |
Pgp-inhibitor:   | 0.248 |
Pgp-substrate:   | 0.004 |
Human Intestinal Absorption (HIA):   | 0.018 |
20% Bioavailability (F20%):   | 0.015 |
30% Bioavailability (F30%):   | 0.158 |
Blood-Brain-Barrier Penetration (BBB):   | 0.059 |
Plasma Protein Binding (PPB):   | 97.23641204833984% |
Volume Distribution (VD):   | 1.44 |
Pgp-substrate:   | 1.807233452796936% |
CYP1A2-inhibitor:   | 0.002 |
CYP1A2-substrate:   | 0.346 |
CYP2C19-inhibitor:   | 0.009 |
CYP2C19-substrate:   | 0.913 |
CYP2C9-inhibitor:   | 0.048 |
CYP2C9-substrate:   | 0.253 |
CYP2D6-inhibitor:   | 0.0 |
CYP2D6-substrate:   | 0.348 |
CYP3A4-inhibitor:   | 0.085 |
CYP3A4-substrate:   | 0.46 |
Clearance (CL):   | 5.939 |
Half-life (T1/2):   | 0.016 |
hERG Blockers:   | 0.04 |
Human Hepatotoxicity (H-HT):   | 0.177 |
Drug-inuced Liver Injury (DILI):   | 0.085 |
AMES Toxicity:   | 0.068 |
Rat Oral Acute Toxicity:   | 0.039 |
Maximum Recommended Daily Dose:   | 0.273 |
Skin Sensitization:   | 0.019 |
Carcinogencity:   | 0.038 |
Eye Corrosion:   | 0.003 |
Eye Irritation:   | 0.005 |
Respiratory Toxicity:   | 0.72 |
Natural Product ID:   | NPC323787 |
Common Name*:   | NPJICTMALKLTFW-AAZFORHSSA-N |
IUPAC Name:   | n.a. |
Synonyms:   | |
Standard InCHIKey:   | NPJICTMALKLTFW-AAZFORHSSA-N |
Standard InCHI:   | InChI=1S/C35H60O6/c1-7-22(20(2)3)9-8-21(4)26-12-13-27-25-11-10-23-18-24(14-16-34(23,5)28(25)15-17-35(26,27)6)40-33-32(39)31(38)30(37)29(19-36)41-33/h10,20-22,24-33,36-39H,7-9,11-19H2,1-6H3/t21?,22?,24?,25?,26?,27?,28?,29-,30-,31-,32-,33-,34?,35?/m1/s1 |
SMILES:   | CCC(CCC(C)C1CCC2C1(CCC3C2CC=C4C3(CCC(C4)OC5C(C(C(C(O5)CO)O)O)O)C)C)C(C)C |
Synthetic Gene Cluster:   | n.a. |
ChEMBL Identifier:   | n.a. |
PubChem CID:   |
16058090 |
Chemical Classification**:   |
|
*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.
Organism ID | Organism Name | Taxonomy Level | Family | SuperKingdom | Isolation Part | Collection Location | Collection Time | Reference |
---|---|---|---|---|---|---|---|---|
NPO17494 | Prunella vulgaris | Species | Lamiaceae | Eukaryota | n.a. | leaf | n.a. | DOI[10.1016/0031-9422(86)88033-5] |
NPO17494 | Prunella vulgaris | Species | Lamiaceae | Eukaryota | n.a. | stem | n.a. | DOI[10.1016/0031-9422(86)88033-5] |
NPO14948 | Brucea javanica | Species | Simaroubaceae | Eukaryota | n.a. | seed | n.a. | DOI[10.1016/0031-9422(96)00258-0] |
NPO9798 | Paeonia lactiflora | Species | Paeoniaceae | Eukaryota | Seeds | Anhui province, China | DOI[10.1016/j.foodres.2020.109416] | |
NPO9798 | Paeonia lactiflora | Species | Paeoniaceae | Eukaryota | Seeds | Gansu province, China | DOI[10.1016/j.foodres.2020.109416] | |
NPO9798 | Paeonia lactiflora | Species | Paeoniaceae | Eukaryota | Seeds | Henan province, China | DOI[10.1016/j.foodres.2020.109416] | |
NPO9798 | Paeonia lactiflora | Species | Paeoniaceae | Eukaryota | Seeds | Shandong province, China | DOI[10.1016/j.foodres.2020.109416] | |
NPO9798 | Paeonia lactiflora | Species | Paeoniaceae | Eukaryota | Seeds | Shanxi province, China | DOI[10.1016/j.foodres.2020.109416] | |
NPO17494 | Prunella vulgaris | Species | Lamiaceae | Eukaryota | whole plant | n.a. | n.a. | DOI[10.1016/j.tetlet.2016.12.029] |
NPO14948 | Brucea javanica | Species | Simaroubaceae | Eukaryota | n.a. | fruit | n.a. | DOI[10.1016/S1383-5769(99)00023-9] |
NPO9798 | Paeonia lactiflora | Species | Paeoniaceae | Eukaryota | n.a. | root | n.a. | DOI[10.2174/092986712800229032] |
NPO14948 | Brucea javanica | Species | Simaroubaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[10086989] |
NPO1373 | Pulsatilla chinensis | Species | Ranunculaceae | Eukaryota | n.a. | root | n.a. |
PMID[10514313] |
NPO1373 | Pulsatilla chinensis | Species | Ranunculaceae | Eukaryota | roots | n.a. | n.a. |
PMID[10514313] |
NPO5743 | Salvia miltiorrhiza | Species | Lamiaceae | Eukaryota | n.a. | root | n.a. |
PMID[11374966] |
NPO1373 | Pulsatilla chinensis | Species | Ranunculaceae | Eukaryota | roots | n.a. | n.a. |
PMID[11575962] |
NPO31494 | Acanthopanax senticosus | n.a. | n.a. | n.a. | n.a. | leaf | n.a. |
PMID[11816040] |
NPO18781 | Hyoscyamus niger | Species | Solanaceae | Eukaryota | seeds | n.a. | n.a. |
PMID[11858758] |
NPO26351 | Agastache rugosa | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[11908994] |
NPO21891 | Panax notoginseng | Species | Araliaceae | Eukaryota | Flower buds | n.a. | n.a. |
PMID[12880307] |
NPO14814 | Aristolochia contorta | Species | Aristolochiaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[1431939] |
NPO14948 | Brucea javanica | Species | Simaroubaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[1512598] |
NPO14948 | Brucea javanica | Species | Simaroubaceae | Eukaryota | Seeds | n.a. | n.a. |
PMID[15165151] |
NPO22309 | Gastrodia elata | Species | Orchidaceae | Eukaryota | n.a. | tuber | n.a. |
PMID[15180301] |
NPO3578 | Andrographis paniculata | Species | Acanthaceae | Eukaryota | n.a. | leaf | n.a. |
PMID[15894448] |
NPO3578 | Andrographis paniculata | Species | Acanthaceae | Eukaryota | n.a. | root | n.a. |
PMID[15894448] |
NPO5743 | Salvia miltiorrhiza | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[16038550] |
NPO3578 | Andrographis paniculata | Species | Acanthaceae | Eukaryota | aerial parts | purchased in Juhuacun herbal market, Kunming, Yunnan Province, China | 2002-Oct |
PMID[16562826] |
NPO31494 | Acanthopanax senticosus | n.a. | n.a. | n.a. | n.a. | n.a. | n.a. |
PMID[17125224] |
NPO22309 | Gastrodia elata | Species | Orchidaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[17381154] |
NPO5743 | Salvia miltiorrhiza | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[17583950] |
NPO21891 | Panax notoginseng | Species | Araliaceae | Eukaryota | Stems | n.a. | n.a. |
PMID[17663584] |
NPO14948 | Brucea javanica | Species | Simaroubaceae | Eukaryota | fruit | Indonesia | n.a. |
PMID[17896817] |
NPO21891 | Panax notoginseng | Species | Araliaceae | Eukaryota | Roots | n.a. | n.a. |
PMID[18186611] |
NPO26351 | Agastache rugosa | Species | Lamiaceae | Eukaryota | n.a. | root | n.a. |
PMID[1823989] |
NPO3578 | Andrographis paniculata | Species | Acanthaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[18357994] |
NPO30150 | Psoralea corylifolia | Species | Fabaceae | Eukaryota | seeds | n.a. | n.a. |
PMID[18359631] |
NPO29141 | Panax ginseng | Species | Araliaceae | Eukaryota | n.a. | leaf | n.a. |
PMID[18409045] |
NPO5743 | Salvia miltiorrhiza | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[18855446] |
NPO14948 | Brucea javanica | Species | Simaroubaceae | Eukaryota | n.a. | Vietnam | n.a. |
PMID[19026551] |
NPO9798 | Paeonia lactiflora | Species | Paeoniaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[19402674] |
NPO9798 | Paeonia lactiflora | Species | Paeoniaceae | Eukaryota | n.a. | root | n.a. |
PMID[19721258] |
NPO9798 | Paeonia lactiflora | Species | Paeoniaceae | Eukaryota | n.a. | root | n.a. |
PMID[19772486] |
NPO29141 | Panax ginseng | Species | Araliaceae | Eukaryota | flower buds | n.a. | n.a. |
PMID[19926279] |
NPO30031 | Siegesbeckia pubescens | Species | Asteraceae | Eukaryota | aerial parts | n.a. | n.a. |
PMID[19928884] |
NPO14948 | Brucea javanica | Species | Simaroubaceae | Eukaryota | seeds | n.a. | n.a. |
PMID[20050684] |
NPO29334 | Oplopanax elatus | Species | Araliaceae | Eukaryota | stems | n.a. | n.a. |
PMID[20387902] |
NPO5743 | Salvia miltiorrhiza | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[20455578] |
NPO9798 | Paeonia lactiflora | Species | Paeoniaceae | Eukaryota | Roots | n.a. | n.a. |
PMID[20806783] |
NPO29141 | Panax ginseng | Species | Araliaceae | Eukaryota | n.a. | root | n.a. |
PMID[2092947] |
NPO29141 | Panax ginseng | Species | Araliaceae | Eukaryota | berry | n.a. | n.a. |
PMID[21216145] |
NPO3578 | Andrographis paniculata | Species | Acanthaceae | Eukaryota | n.a. | leaf | n.a. |
PMID[21598983] |
NPO5743 | Salvia miltiorrhiza | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[21775156] |
NPO9798 | Paeonia lactiflora | Species | Paeoniaceae | Eukaryota | n.a. | root | n.a. |
PMID[21782011] |
NPO3578 | Andrographis paniculata | Species | Acanthaceae | Eukaryota | n.a. | leaf | n.a. |
PMID[22026410] |
NPO9798 | Paeonia lactiflora | Species | Paeoniaceae | Eukaryota | n.a. | root | n.a. |
PMID[22190295] |
NPO28914 | Caragana sinica | Species | Fabaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[22209460] |
NPO14948 | Brucea javanica | Species | Simaroubaceae | Eukaryota | Seeds | n.a. | n.a. |
PMID[22506620] |
NPO30633 | Acanthopanax sessiliflorus | n.a. | n.a. | n.a. | Fruits | n.a. | n.a. |
PMID[22691179] |
NPO8101 | Rehmannia glutinosa | Species | Orobanchaceae | Eukaryota | Roots | n.a. | n.a. |
PMID[22916954] |
NPO5743 | Salvia miltiorrhiza | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[23286284] |
NPO9798 | Paeonia lactiflora | Species | Paeoniaceae | Eukaryota | n.a. | seed | n.a. |
PMID[23497864] |
NPO5743 | Salvia miltiorrhiza | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[24108414] |
NPO29141 | Panax ginseng | Species | Araliaceae | Eukaryota | leaves | n.a. | n.a. |
PMID[24290061] |
NPO29141 | Panax ginseng | Species | Araliaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[24968750] |
NPO30031 | Siegesbeckia pubescens | Species | Asteraceae | Eukaryota | aerial part | n.a. | n.a. |
PMID[24997688] |
NPO29141 | Panax ginseng | Species | Araliaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[25152999] |
NPO30303 | Pueraria lobata | Species | Fabaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[25679337] |
NPO30150 | Psoralea corylifolia | Species | Fabaceae | Eukaryota | Fruits | n.a. | n.a. |
PMID[25710081] |
NPO22309 | Gastrodia elata | Species | Orchidaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[25843525] |
NPO10680 | Cistanche deserticola | Species | Orobanchaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[25900014] |
NPO21891 | Panax notoginseng | Species | Araliaceae | Eukaryota | Steamed Roots | n.a. | n.a. |
PMID[26200131] |
NPO29141 | Panax ginseng | Species | Araliaceae | Eukaryota | stems-leaves | n.a. | n.a. |
PMID[26420067] |
NPO9798 | Paeonia lactiflora | Species | Paeoniaceae | Eukaryota | n.a. | root | n.a. |
PMID[26838074] |
NPO9798 | Paeonia lactiflora | Species | Paeoniaceae | Eukaryota | n.a. | root | n.a. |
PMID[27313650] |
NPO9798 | Paeonia lactiflora | Species | Paeoniaceae | Eukaryota | n.a. | root | n.a. |
PMID[27429639] |
NPO5743 | Salvia miltiorrhiza | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[27569393] |
NPO29141 | Panax ginseng | Species | Araliaceae | Eukaryota | n.a. | stem | n.a. |
PMID[27914541] |
NPO29141 | Panax ginseng | Species | Araliaceae | Eukaryota | Flower Buds | n.a. | n.a. |
PMID[28345906] |
NPO5743 | Salvia miltiorrhiza | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[29185738] |
NPO9798 | Paeonia lactiflora | Species | Paeoniaceae | Eukaryota | Roots | n.a. | n.a. |
PMID[29741372] |
NPO5743 | Salvia miltiorrhiza | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[30351923] |
NPO30150 | Psoralea corylifolia | Species | Fabaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[3069958] |
NPO31494 | Acanthopanax senticosus | n.a. | n.a. | n.a. | Barks | Iksan, Chunbuk, Korea | n.a. |
PMID[3127544] |
NPO26351 | Agastache rugosa | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[31747281] |
NPO29141 | Panax ginseng | Species | Araliaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[32129622] |
NPO9798 | Paeonia lactiflora | Species | Paeoniaceae | Eukaryota | Seeds | HeZe, ShanDong, China | early autumn (from August to the beginning of September |
PMID[32545196] |
NPO9798 | Paeonia lactiflora | Species | Paeoniaceae | Eukaryota | Roots | n.a. | n.a. |
PMID[32951423] |
NPO9798 | Paeonia lactiflora | Species | Paeoniaceae | Eukaryota | Seeds | Xinjiang,China |
PMID[33063333] |
|
NPO5743 | Salvia miltiorrhiza | Species | Lamiaceae | Eukaryota | n.a. | root | n.a. |
PMID[3655791] |
NPO14948 | Brucea javanica | Species | Simaroubaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[6481366] |
NPO14948 | Brucea javanica | Species | Simaroubaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[7561896] |
NPO3578 | Andrographis paniculata | Species | Acanthaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[8377022] |
NPO26351 | Agastache rugosa | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. |
PMID[8594148] |
NPO30150 | Psoralea corylifolia | Species | Fabaceae | Eukaryota | n.a. | seed | n.a. |
PMID[8759164] |
NPO5743 | Salvia miltiorrhiza | Species | Lamiaceae | Eukaryota | roots | n.a. | n.a. |
PMID[9834151] |
NPO19649 | Akebia quinata | Species | Lardizabalaceae | Eukaryota | n.a. | n.a. | n.a. | Database[Article] |
NPO26622 | Taraxacum officinale | Species | Asteraceae | Eukaryota | Plant | n.a. | n.a. | Database[FooDB] |
NPO26622 | Taraxacum officinale | Species | Asteraceae | Eukaryota | Root | n.a. | n.a. | Database[FooDB] |
NPO26622 | Taraxacum officinale | Species | Asteraceae | Eukaryota | n.a. | n.a. | Database[FooDB] | |
NPO26622 | Taraxacum officinale | Species | Asteraceae | Eukaryota | n.a. | n.a. | Database[FooDB] | |
NPO26622 | Taraxacum officinale | Species | Asteraceae | Eukaryota | Leaf | n.a. | n.a. | Database[FooDB] |
NPO18781 | Hyoscyamus niger | Species | Solanaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
NPO30520 | Patrinia scabiosaefolia | Species | Caprifoliaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
NPO30150 | Psoralea corylifolia | Species | Fabaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
NPO5743 | Salvia miltiorrhiza | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
NPO3578 | Andrographis paniculata | Species | Acanthaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
NPO22309 | Gastrodia elata | Species | Orchidaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
NPO28914 | Caragana sinica | Species | Fabaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
NPO28375 | Pygeum topengii | Species | Rosaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
NPO29141 | Panax ginseng | Species | Araliaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
NPO24775 | Rhodiola sacra | Species | Crassulaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
NPO11329 | Echinops grijsii | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
NPO19649 | Akebia quinata | Species | Lardizabalaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
NPO31494 | Acanthopanax senticosus | n.a. | n.a. | n.a. | n.a. | n.a. | n.a. | Database[HerDing] |
NPO30633 | Acanthopanax sessiliflorus | n.a. | n.a. | n.a. | n.a. | n.a. | n.a. | Database[HerDing] |
NPO14948 | Brucea javanica | Species | Simaroubaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
NPO23017 | Urtica dioica | Species | Urticaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
NPO15730 | Citrus medica | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
NPO19769 | Boschniakia rossica | Species | Orobanchaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
NPO19048 | Pinellia ternata | Species | Araceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
NPO1373 | Pulsatilla chinensis | Species | Ranunculaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
NPO11170 | Akebia trifoliata | Species | Lardizabalaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
NPO17494 | Prunella vulgaris | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
NPO8516 | Dipsacus asperoides | Species | Caprifoliaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
NPO27725 | Artemisia vestita | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
NPO10680 | Cistanche deserticola | Species | Orobanchaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
NPO14814 | Aristolochia contorta | Species | Aristolochiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
NPO30303 | Pueraria lobata | Species | Fabaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
NPO29334 | Oplopanax elatus | Species | Araliaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
NPO12690 | Caltha palustris | Species | Ranunculaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
NPO9798 | Paeonia lactiflora | Species | Paeoniaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
NPO18619 | Echinops ritro | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
NPO26622 | Taraxacum officinale | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
NPO8101 | Rehmannia glutinosa | Species | Orobanchaceae | Eukaryota | n.a. | n.a. | n.a. | Database[HerDing] |
NPO29141 | Panax ginseng | Species | Araliaceae | Eukaryota | n.a. | n.a. | n.a. | Database[MetaboLights] |
NPO11170 | Akebia trifoliata | Species | Lardizabalaceae | Eukaryota | n.a. | pericarp | n.a. |
PMID[p25172756] |
NPO26622 | Taraxacum officinale | Species | Asteraceae | Eukaryota | n.a. | n.a. | Database[Phenol-Explorer] | |
NPO14814 | Aristolochia contorta | Species | Aristolochiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
NPO9798 | Paeonia lactiflora | Species | Paeoniaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
NPO11329 | Echinops grijsii | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
NPO11170 | Akebia trifoliata | Species | Lardizabalaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
NPO15730 | Citrus medica | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
NPO8516 | Dipsacus asperoides | Species | Caprifoliaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
NPO28914 | Caragana sinica | Species | Fabaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
NPO18781 | Hyoscyamus niger | Species | Solanaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
NPO5743 | Salvia miltiorrhiza | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
NPO17494 | Prunella vulgaris | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
NPO14948 | Brucea javanica | Species | Simaroubaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
NPO29141 | Panax ginseng | Species | Araliaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
NPO3578 | Andrographis paniculata | Species | Acanthaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
NPO24775 | Rhodiola sacra | Species | Crassulaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
NPO8101 | Rehmannia glutinosa | Species | Orobanchaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
NPO10680 | Cistanche deserticola | Species | Orobanchaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
NPO12690 | Caltha palustris | Species | Ranunculaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
NPO22309 | Gastrodia elata | Species | Orchidaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
NPO23017 | Urtica dioica | Species | Urticaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
NPO19048 | Pinellia ternata | Species | Araceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
NPO27725 | Artemisia vestita | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
NPO19769 | Boschniakia rossica | Species | Orobanchaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
NPO26622 | Taraxacum officinale | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
NPO28375 | Pygeum topengii | Species | Rosaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
NPO29334 | Oplopanax elatus | Species | Araliaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
NPO18619 | Echinops ritro | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
NPO19649 | Akebia quinata | Species | Lardizabalaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
NPO1373 | Pulsatilla chinensis | Species | Ranunculaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCMID] |
NPO31494 | Acanthopanax senticosus | n.a. | n.a. | n.a. | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
NPO28914 | Caragana sinica | Species | Fabaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
NPO19649 | Akebia quinata | Species | Lardizabalaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
NPO29334 | Oplopanax elatus | Species | Araliaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
NPO17494 | Prunella vulgaris | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
NPO19769 | Boschniakia rossica | Species | Orobanchaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
NPO5743 | Salvia miltiorrhiza | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
NPO11329 | Echinops grijsii | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
NPO8101 | Rehmannia glutinosa | Species | Orobanchaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
NPO1373 | Pulsatilla chinensis | Species | Ranunculaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
NPO30150 | Psoralea corylifolia | Species | Fabaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
NPO5986.3 | Ziziphus jujuba mill. var. inermis (bge.) rehd. | Varieties | Rhamnaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
NPO30303 | Pueraria lobata | Species | Fabaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
NPO14105.3 | Panax pseudo-ginseng wall. var. notoginseng (burk.) hoo et tseng | Varieties | Araliaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
NPO22309 | Gastrodia elata | Species | Orchidaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
NPO8516 | Dipsacus asperoides | Species | Caprifoliaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
NPO18781 | Hyoscyamus niger | Species | Solanaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
NPO14948 | Brucea javanica | Species | Simaroubaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
NPO19048 | Pinellia ternata | Species | Araceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
NPO30550 | Saposhnikovia divaricate | Species | Apiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
NPO28375 | Pygeum topengii | Species | Rosaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
NPO14814 | Aristolochia contorta | Species | Aristolochiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
NPO30031 | Siegesbeckia pubescens | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
NPO12690 | Caltha palustris | Species | Ranunculaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
NPO31199 | Jnula britannica | n.a. | n.a. | n.a. | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
NPO30520 | Patrinia scabiosaefolia | Species | Caprifoliaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
NPO3578 | Andrographis paniculata | Species | Acanthaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
NPO26351 | Agastache rugosa | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
NPO29141 | Panax ginseng | Species | Araliaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
NPO23017 | Urtica dioica | Species | Urticaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
NPO11170 | Akebia trifoliata | Species | Lardizabalaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
NPO30633 | Acanthopanax sessiliflorus | n.a. | n.a. | n.a. | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
NPO18619 | Echinops ritro | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
NPO26622 | Taraxacum officinale | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
NPO27725 | Artemisia vestita | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
NPO15730 | Citrus medica | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
NPO9798 | Paeonia lactiflora | Species | Paeoniaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
NPO21891 | Panax notoginseng | Species | Araliaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
NPO31183 | Thalictrum foetidvm | Species | Ranunculaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
NPO10680 | Cistanche deserticola | Species | Orobanchaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
NPO24775 | Rhodiola sacra | Species | Crassulaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TCM_Taiwan] |
NPO22309 | Gastrodia elata | Species | Orchidaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
NPO18781 | Hyoscyamus niger | Species | Solanaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
NPO28914 | Caragana sinica | Species | Fabaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
NPO15730 | Citrus medica | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
NPO19649 | Akebia quinata | Species | Lardizabalaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
NPO26622 | Taraxacum officinale | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
NPO11170 | Akebia trifoliata | Species | Lardizabalaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
NPO21891 | Panax notoginseng | Species | Araliaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
NPO3578 | Andrographis paniculata | Species | Acanthaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
NPO17494 | Prunella vulgaris | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
NPO11329 | Echinops grijsii | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
NPO19048 | Pinellia ternata | Species | Araceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
NPO14814 | Aristolochia contorta | Species | Aristolochiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
NPO8101 | Rehmannia glutinosa | Species | Orobanchaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
NPO5743 | Salvia miltiorrhiza | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
NPO10680 | Cistanche deserticola | Species | Orobanchaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
NPO29141 | Panax ginseng | Species | Araliaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
NPO1373 | Pulsatilla chinensis | Species | Ranunculaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
NPO9798 | Paeonia lactiflora | Species | Paeoniaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
NPO26351 | Agastache rugosa | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
NPO14948 | Brucea javanica | Species | Simaroubaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
NPO8516 | Dipsacus asperoides | Species | Caprifoliaceae | Eukaryota | n.a. | n.a. | n.a. | Database[TM-MC] |
NPO26622 | Taraxacum officinale | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
NPO3578 | Andrographis paniculata | Species | Acanthaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
NPO28914 | Caragana sinica | Species | Fabaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
NPO19048 | Pinellia ternata | Species | Araceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
NPO28375 | Pygeum topengii | Species | Rosaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
NPO17494 | Prunella vulgaris | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
NPO10680 | Cistanche deserticola | Species | Orobanchaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
NPO11329 | Echinops grijsii | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
NPO24775 | Rhodiola sacra | Species | Crassulaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
NPO19649 | Akebia quinata | Species | Lardizabalaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
NPO9798 | Paeonia lactiflora | Species | Paeoniaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
NPO11170 | Akebia trifoliata | Species | Lardizabalaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
NPO18619 | Echinops ritro | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
NPO15730 | Citrus medica | Species | Rutaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
NPO14948 | Brucea javanica | Species | Simaroubaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
NPO22309 | Gastrodia elata | Species | Orchidaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
NPO29334 | Oplopanax elatus | Species | Araliaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
NPO27725 | Artemisia vestita | Species | Asteraceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
NPO5743 | Salvia miltiorrhiza | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
NPO26351 | Agastache rugosa | Species | Lamiaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
NPO12690 | Caltha palustris | Species | Ranunculaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
NPO19769 | Boschniakia rossica | Species | Orobanchaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
NPO8101 | Rehmannia glutinosa | Species | Orobanchaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
NPO29141 | Panax ginseng | Species | Araliaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
NPO18781 | Hyoscyamus niger | Species | Solanaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
NPO8516 | Dipsacus asperoides | Species | Caprifoliaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
NPO1373 | Pulsatilla chinensis | Species | Ranunculaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
NPO21891 | Panax notoginseng | Species | Araliaceae | Eukaryota | n.a. | n.a. | n.a. | Database[UNPD] |
☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
☉ UNPD: Universal Natural Products Database [PMID: 23638153].
☉ StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
☉ TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
☉ TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
☉ TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
☉ TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
☉ HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
☉ MetaboLights: a metabolomics database [PMID: 27010336].
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].
Organism ID | NP ID | Organism Material Preparation | Organism Part | NP Quantity (Standard) | NP Quantity (Minimum) | NP Quantity (Maximum) | Quantity Unit | Reference |
---|
☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
☉ DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
☉ PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].
Target ID | Target Type | Target Name | Target Organism | Activity Type | Activity Relation | Value | Unit | Reference |
---|
☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.
Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)
Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient
●  The left chart: Distribution of similarity level between NPC323787 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).
Similarity Score | Similarity Level | Natural Product ID |
---|
Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.
●  The left chart: Distribution of similarity level between NPC323787 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).
Similarity Score | Similarity Level | Drug ID | Developmental Stage |
---|
Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
☉ A: chemistry similarity;
☉ B: biological targets similarity;
☉ C: networks similarity;
☉ D: cell-based bioactivity similarity;
☉ E: similarity based on clinical data.
Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.