Natural Product: NPC312391

Natural Product IDNPC312391
Common Name
?
The InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
(-)-Strobopinin
IUPAC Name (2S)-5,7-dihydroxy-6-methyl-2-phenyl-2,3-dihydrochromen-4-one
Synonyms (-)-Strobopinin
Synthetic Gene Cluster n.a.
ChEMBL Identifier CHEMBL227611
PubChem CID 442520
Chemical Classification
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000261] Phenylpropanoids and polyketides
      • [CHEMONTID:0000334] Flavonoids
        • [CHEMONTID:0000337] Flavans
          • [CHEMONTID:0001632] Flavanones

The Chemical Classification was calculated by Classyfire, a software for chemical taxonomy calculation. Reference: DOI:10.1186/s13321-016-0174-y.

  Chemical Representations

Standard InCHIKey INBPQAJYHSJVRY-ZDUSSCGKSA-N
Standard InCHI InChI=1S/C16H14O4/c1-9-11(17)7-14-15(16(9)19)12(18)8-13(20-14)10-5-3-2-4-6-10/h2-7,13,17,19H,8H2,1H3/t13-/m0/s1
SMILES Cc1c(cc2c(C(=O)C[C@@H](c3ccccc3)O2)c1O)O

  Calculated Properties

Physi-Chem Properties

Molecular Weight:   270.09 Volume:   276.329
?
Van der Waals volume.
Dense:   0.977 LogP:   3.571
?
The logarithm of the n-octanol/water distribution coefficients.
logD7.4:   3.253
?
The logarithm of the n-octanol/water distribution coefficient at pH=7.4.
LogS:   -4.687
?
The logarithm of aqueous solubility value.
Rotatable Bonds:   1.0 Rigid Bonds:   18.0
TPSA:   66.76
?
Topological Polar Surface Area.
H-Bond Acceptor:   4.0
H-Bond Donor:   2.0 Rings:   3.0
Heavy Atoms:   4.0

MedChem Properties

QED Drug-Likeness Score:   0.835 GASA:   0.0
?
GASA represents the probability of being difficult to synthesize, ranging from 0 to 1.
Synthetic Accessibility Score:   2.805 Fsp3:   0.188
MCE-18:   54.579
?
MCE-18 stands for medicinal chemistry evolution.MCE-18≥45 is considered a suitable value.
Lipinski Rule-of-5:   Rejected
Pfizer Rule:   Accepted GSK Rule:   Rejected
Golden Triangle Rule:   Rejected BMS Rule:   1
Chelating Alert:   0 PAINS Alert:   0
Colloidal aggregators:   0.587 Fluc inhibitor:   0.781
?
The fluc inhibitor value is the probability of being fLuc inhibitors, within the range of 0 to 1.
Blue fluorescence:   0.311
?
The blue fluorescence value is the probability of being blue fluorescence, within the range of 0 to 1
Green fluorescence:   0.274
?
The green fluorescence value is the probability of being green fluorescence, within the range of 0 to 1
Reactive compounds:   0.37 Promiscuous compounds:   0.031

ADMET Properties (ADMETlab3.0)

ADMET: Absorption

Caco-2 Permeability:   -4.913 MDCK Permeability:   -4.744
Pgp-inhibitor:   0.992 Pgp-substrate:   0.007
PAMPA:   0.883
?
The experimental data for Peff was logarithmically transformed (logPeff). Molecules with log Peff values below 2.0 were classified as low-permeability (Category 0), while those with log Peff values exceeding 2.5 were classified as high-permeability (Category 1).
Human Intestinal Absorption (HIA):   0.014
20% Bioavailability (F20%):   0.003 30% Bioavailability (F30%):   0.902
50% Bioavailability (F50%):   0.987

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):   0.004 MRP1:   0.943
Plasma Protein Binding (PPB):   97.563% Volume Distribution (VD):   0.206
Fu: 2.626%
?
The fraction unbound in plasms.
OATP1B1 inhibitor:   0.998
OATP1B3 inhibitor:   1.0 BCRP inhibitor:   0.842
BSEP inhibitor:   0.963

ADMET: Metabolism

CYP1A2-inhibitor:   0.998 CYP1A2-substrate:   0.78
CYP2C19-inhibitor:   0.388 CYP2C19-substrate:   0.969
CYP2C9-inhibitor:   0.233 CYP2C9-substrate:   0.001
CYP2D6-inhibitor:   0.307 CYP2D6-substrate:   0.977
CYP3A4-inhibitor:   0.228 CYP3A4-substrate:   0.198
CYP2B6-substrate:   0.0 CYP2C8-inhibitor:   0.99
HLM stability:   0.996
?
Human liver microsomal (HLM) stability. Category 0: stable+ (HLM > 30 min); Category 1: unstable- (HLM ≤ 30 min). The output value is the probability of human liver microsomal instability, where a value closer to 1 indicates a higher likelihood of instability.

ADMET: Excretion

Clearance (CL):  4.953 Half-life (T1/2):  1.112

ADMET: Toxicity

hERG Blockers:  0.07 hERG Blockers (10um):  0.497
Human Hepatotoxicity (H-HT):  0.789 Drug-induced Liver Injury (DILI):  0.23
AMES Toxicity:  0.713 Rat Oral Acute Toxicity:  0.562
Maximum Recommended Daily Dose:  0.499 Skin Sensitization:  0.908
Carcinogencity:  0.429 Eye Corrosion:  0.06
Eye Irritation:  0.997 Respiratory Toxicity:  0.425
Drug-induced Neurotoxicity:  0.778 Ototoxicity:  0.387
Hematotoxicity:  0.209 Drug-induced Nephrotoxicity:  0.59
Genotoxicity:  0.86 RPMI-8226 Immunitoxicity:  0.137
A549 Cytotoxicity:  0.387 Hek293 Cytotoxicity:  0.436
BCF:   1.408
?
Bioconcentration factors are used for considering secondary poisoning potential and assessing risks to human health via the food chain. The unit is -log10[(mg/L)/(1000*MW)].
IGC50:   4.069
?
48 hour Tetrahymena pyriformis IGC50. The unit of IGC50 is -log10[(mg/L)/(1000*MW)].
LC50DM:   5.553
?
48 hour Daphnia magna LC50. The unit of LC50DM is -log10[(mg/L)/(1000*MW)].
LC50FM:   4.777
?
96 hour fathead minnow LC50. The unit of LC50FM is -log10[(mg/L)/(1000*MW)].

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO28778 Eucalyptus viminalis Species Myrtaceae Eukaryota n.a. n.a. n.a. DOI[10.1007/BF00579992]
NPO28276 Artemisia argyi Species Asteraceae Eukaryota n.a. n.a. n.a. DOI[10.1016/j.jep.2005.01.054]
NPO27604 Erythrina burttii Species Fabaceae Eukaryota n.a. root n.a. DOI[10.1016/S0031-9422(01)00459-9]
NPO16098 Boronia pinnata Species Rutaceae Eukaryota n.a. n.a. n.a. PMID[11076549]
NPO809 Leitneria floridana Species Simaroubaceae Eukaryota n.a. aerial part n.a. PMID[11141127]
NPO27847 Suillus granulatus Species Suillaceae Eukaryota n.a. n.a. n.a. PMID[11575963]
NPO7869 Peritassa campestris Species Celastraceae Eukaryota n.a. root n.a. PMID[11738408]
NPO27604 Erythrina burttii Species Fabaceae Eukaryota n.a. stem n.a. PMID[12770595]
NPO27847 Suillus granulatus Species Suillaceae Eukaryota n.a. n.a. n.a. PMID[1294697]
NPO6457 Pinus strobus Species Pinaceae Eukaryota n.a. heartwood n.a. PMID[13465274]
NPO27878 Viola hondoensis Species Violaceae Eukaryota n.a. whole plant n.a. PMID[15356999]
NPO27517 Crinum latifolium Species Amaryllidaceae Eukaryota n.a. leaf n.a. PMID[15595606]
NPO8513 Pseudomonas fluorescens Species Pseudomonadaceae Bacteria n.a. n.a. n.a. PMID[15826166]
NPO5635 Bauhinia purpurea Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[16562827]
NPO22142 Hippocratea excelsa Species n.a. n.a. root bark n.a. n.a. PMID[17385912]
NPO22142 Hippocratea excelsa Species n.a. n.a. n.a. root n.a. PMID[17385912]
NPO28641 Tubocapsicum anomalum Species Solanaceae Eukaryota stems, roots, and leaves Da-Han Mountain, Kaohsiung, Taiwan 2004-OCT PMID[17417907]
NPO28641 Tubocapsicum anomalum Species Solanaceae Eukaryota n.a. n.a. n.a. PMID[17417907]
NPO5635 Bauhinia purpurea Species Fabaceae Eukaryota n.a. root n.a. PMID[17480099]
NPO5635 Bauhinia purpurea Species Fabaceae Eukaryota roots Phitsanulok Province, Thailand 2004-MAY PMID[17480099]
NPO8513 Pseudomonas fluorescens Species Pseudomonadaceae Bacteria n.a. n.a. n.a. PMID[17924666]
NPO28378 Kokoona ochracea Species Celastraceae Eukaryota n.a. n.a. n.a. PMID[1800637]
NPO28877 Scutellaria baicalensis Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[19829679]
NPO28807 Laggera pterodonta Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[20506820]
NPO6364 Pongamiopsis pervilleana Species Fabaceae Eukaryota n.a. Madagascar Dry Forest n.a. PMID[20804165]
NPO8513 Pseudomonas fluorescens Species Pseudomonadaceae Bacteria n.a. n.a. n.a. PMID[20979386]
NPO28877 Scutellaria baicalensis Species Lamiaceae Eukaryota n.a. root n.a. PMID[21087019]
NPO14130 Phagnalon rupestre Species Asteraceae Eukaryota n.a. aerial part n.a. PMID[21469692]
NPO14130 Phagnalon rupestre Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[21469692]
NPO28877 Scutellaria baicalensis Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[22314230]
NPO22142 Hippocratea excelsa Species n.a. n.a. n.a. n.a. n.a. PMID[2292687]
NPO7890 Cleistanthus indochinensis Species Phyllanthaceae Eukaryota fruits n.a. n.a. PMID[22938151]
NPO28877 Scutellaria baicalensis Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[23521110]
NPO8513 Pseudomonas fluorescens Species Pseudomonadaceae Bacteria n.a. n.a. n.a. PMID[23688329]
NPO8513 Pseudomonas fluorescens Species Pseudomonadaceae Bacteria n.a. n.a. n.a. PMID[23897464]
NPO20443 Cratoxylum pruniflorum Species Hypericaceae Eukaryota roots n.a. n.a. PMID[24940955]
NPO27847 Suillus granulatus Species Suillaceae Eukaryota n.a. n.a. n.a. PMID[2607355]
NPO28765 Miliusa balansae Species Annonaceae Eukaryota leaves n.a. n.a. PMID[26238320]
NPO27847 Suillus granulatus Species Suillaceae Eukaryota n.a. n.a. n.a. PMID[2809609]
NPO9138 Syzygium cumini Species Myrtaceae Eukaryota Seeds n.a. n.a. PMID[28134521]
NPO28171 Anacyclus pyrethrum Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[29775308]
NPO28688 Aster tataricus Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[30931559]
NPO28276 Artemisia argyi Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[31181920]
NPO28276 Artemisia argyi Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[31418264]
NPO28807 Laggera pterodonta Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[31664789]
NPO9138 Syzygium cumini Species Myrtaceae Eukaryota n.a. n.a. n.a. PMID[32415726]
NPO27689 Mentha pulegium Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[33502110]
NPO27689 Mentha pulegium Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[34328036]
NPO14130 Phagnalon rupestre Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[36441179]
NPO27689 Mentha pulegium Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[37084277]
NPO28171 Anacyclus pyrethrum Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[37513251]
NPO28877 Scutellaria baicalensis Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[37569279]
NPO9138 Syzygium cumini Species Myrtaceae Eukaryota n.a. n.a. n.a. PMID[37667613]
NPO9138 Syzygium cumini Species Myrtaceae Eukaryota n.a. n.a. n.a. PMID[37917799]
NPO9138 Syzygium cumini Species Myrtaceae Eukaryota n.a. n.a. n.a. PMID[38005226]
NPO9138 Syzygium cumini Species Myrtaceae Eukaryota n.a. n.a. n.a. PMID[38067590]
NPO28276 Artemisia argyi Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[38754641]
NPO7698 Elettaria cardamomum Species Zingiberaceae Eukaryota n.a. n.a. n.a. PMID[38868673]
NPO27689 Mentha pulegium Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[38987699]
NPO7698 Elettaria cardamomum Species Zingiberaceae Eukaryota n.a. n.a. n.a. PMID[38999684]
NPO28171 Anacyclus pyrethrum Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[39220961]
NPO9138 Syzygium cumini Species Myrtaceae Eukaryota n.a. n.a. n.a. PMID[39588261]
NPO27689 Mentha pulegium Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[39633960]
NPO8513 Pseudomonas fluorescens Species Pseudomonadaceae Bacteria n.a. n.a. n.a. PMID[7798954]
NPO28378 Kokoona ochracea Species Celastraceae Eukaryota n.a. n.a. n.a. PMID[8158155]
NPO28378 Kokoona ochracea Species Celastraceae Eukaryota n.a. n.a. n.a. PMID[8277307]
NPO8513 Pseudomonas fluorescens Species Pseudomonadaceae Bacteria n.a. n.a. n.a. PMID[8626242]
NPO28701 Salvia lanigera Species Lamiaceae Eukaryota n.a. root n.a. PMID[8824952]
NPO27927 Alligator sinensis Species Alligatoridae Eukaryota n.a. n.a. n.a. PMID[9287418]
NPO28877 Scutellaria baicalensis Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[9834167]
NPO20443 Cratoxylum pruniflorum Species Hypericaceae Eukaryota n.a. n.a. n.a. Database[Article]
NPO8513 Pseudomonas fluorescens Species Pseudomonadaceae Bacteria n.a. n.a. n.a. Database[COCONUT]
NPO9138 Syzygium cumini Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28276 Artemisia argyi Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO7698 Elettaria cardamomum Species Zingiberaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO24010 Buglossoides arvensis Species Boraginaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO27604 Erythrina burttii Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO6457 Pinus strobus Species Pinaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28895 Pinus monticola Species Pinaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28006 Pinus pumila Species Pinaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28877 Scutellaria baicalensis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO27517 Crinum latifolium Species Amaryllidaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO8679 Streptomyces sparsogenes Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[COCONUT]
NPO28049 Piper callosum Species Piperaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28688 Aster tataricus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO1325 Bonnemaisonia asparagoides Species Bonnemaisoniaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO8086 Lepechinia caulescens Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO195 Maprounea guianensis Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO7869 Peritassa campestris Species Celastraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO16067.1 Pseudotsuga sinensis var. wilsoniana Varieties Pinaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO23092 Ammodendron karelinii Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO3357 Alnus cordata Species Betulaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO4628 Aloe deltoideodonta Species Asphodelaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO5635 Bauhinia purpurea Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO4382 Elmerrillia papuana n.a. n.a. n.a. n.a. n.a. n.a. Database[COCONUT]
NPO1490 Goldfussia yunnanensis n.a. n.a. n.a. n.a. n.a. n.a. Database[COCONUT]
NPO8807 Laurentia longiflora n.a. n.a. n.a. n.a. n.a. n.a. Database[COCONUT]
NPO809 Leitneria floridana Species Simaroubaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO9608 Lepraria citrina Species Stereocaulaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO8977 Notholaena aschenborniana Species Pteridaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO9881 Petrosia hebes Species Petrosiidae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO6828 Purpura aperta Species Muricidae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO25475 Syphonota geographica Species Aplysiidae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO2455 Thermopsis mollis Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO16098 Boronia pinnata Species Rutaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO27927 Alligator sinensis Species Alligatoridae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28807 Laggera pterodonta Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28174 Poterium sanguisorba Species Rosaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO16983 Persea obovatifolia Species Lauraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28414 Medicosma fareana Species Rutaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28641 Tubocapsicum anomalum Species Solanaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO17288 Piliostigma thonningii Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28213 Humicola grisea Species Chaetomiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28191 Hardwickia pinnata Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO15005 Sargassum muticum Species Sargassaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO17152 Pittocaulon bombycophole Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO27532 Lamprolobium fruticosum Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28124 Tamarix gallica Species Tamaricaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO20121 Afraegle paniculata Species Rutaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO27480 Pinna muricata Species Pinnidae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28855 Salix petiolaris Species Salicaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO12101 Ajuga genevensis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28305 Daphnandra johnsonii Species Atherospermataceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28534 Athrixia elata Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28669 Cuscuta australis Species Convolvulaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28842 Oscillatoria raoi Species Oscillatoriaceae Bacteria n.a. n.a. n.a. Database[COCONUT]
NPO28778 Eucalyptus viminalis Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO27894 Rubus pungens Species Rosaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO4094 Aspergillus ruber Species Aspergillaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28701 Salvia lanigera Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28262 Marasmius graminum Species Marasmiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28464 Mentha sylvestris Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28171 Anacyclus pyrethrum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28512 Astragalus glycyphyllos Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28065 Pentachondra pumila Species Ericaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO12835 Cyrtomium falcatum Species Dryopteridaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO27681 Mikania grazielae Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO27861 Laggera aurita Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28074 Dianella revoluta Species Xanthorrhoeaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO27689 Mentha pulegium Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28145 Dendrodoris limbata Species Dendrodorididae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO24144 Ophiomastix mixta Species Ophiocomidae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO27847 Suillus granulatus Species Suillaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO7890 Cleistanthus indochinensis Species Phyllanthaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO20443 Cratoxylum pruniflorum Species Hypericaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28830 Acronychia haplophylla Species Rutaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO9138 Syzygium cumini Species Myrtaceae Eukaryota Bark n.a. n.a. Database[FooDB]
NPO7698 Elettaria cardamomum Species Zingiberaceae Eukaryota Fruit n.a. n.a. Database[FooDB]
NPO9138 Syzygium cumini Species Myrtaceae Eukaryota Fruit n.a. n.a. Database[FooDB]
NPO7698 Elettaria cardamomum Species Zingiberaceae Eukaryota Plant n.a. n.a. Database[FooDB]
NPO7698 Elettaria cardamomum Species Zingiberaceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO9138 Syzygium cumini Species Myrtaceae Eukaryota Stem Bark n.a. n.a. Database[FooDB]
NPO7698 Elettaria cardamomum Species Zingiberaceae Eukaryota n.a. n.a. Database[FooDB]
NPO9138 Syzygium cumini Species Myrtaceae Eukaryota n.a. n.a. Database[FooDB]
NPO7698 Elettaria cardamomum Species Zingiberaceae Eukaryota n.a. n.a. Database[FooDB]
NPO9138 Syzygium cumini Species Myrtaceae Eukaryota n.a. n.a. Database[FooDB]
NPO28276 Artemisia argyi Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO28778 Eucalyptus viminalis Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO27517 Crinum latifolium Species Amaryllidaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO28877 Scutellaria baicalensis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO28688 Aster tataricus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO28124 Tamarix gallica Species Tamaricaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO28326 Uncaria longiflora Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO27689 Mentha pulegium Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO28378 Kokoona ochracea Species Celastraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO28895 Pinus monticola Species Pinaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO28830 Acronychia haplophylla Species Rutaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO28669 Cuscuta australis Species Convolvulaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO28464 Mentha sylvestris Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO27604 Erythrina burttii Species Fabaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO28765 Miliusa balansae Species Annonaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO9138 Syzygium cumini Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO7698 Elettaria cardamomum Species Zingiberaceae Eukaryota n.a. n.a. Database[Phenol-Explorer]
NPO28276 Artemisia argyi Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28688 Aster tataricus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28877 Scutellaria baicalensis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO27517 Crinum latifolium Species Amaryllidaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28765 Miliusa balansae Species Annonaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28326 Uncaria longiflora Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO14888 Pelargonium x hortorum Species Geraniaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO9138 Syzygium cumini Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28669 Cuscuta australis Species Convolvulaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO15319 Glochidion sphaerogynum Species Phyllanthaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28378 Kokoona ochracea Species Celastraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO27988 Salvia pisidica Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28778 Eucalyptus viminalis Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28895 Pinus monticola Species Pinaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28433 Russula queletii Species Russulaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO24010 Buglossoides arvensis Species Boraginaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28124 Tamarix gallica Species Tamaricaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO27604 Erythrina burttii Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28830 Acronychia haplophylla Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO27689 Mentha pulegium Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28464 Mentha sylvestris Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28932 Myrrhis odorata Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28688 Aster tataricus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO28276 Artemisia argyi Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO28877 Scutellaria baicalensis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO28830 Acronychia haplophylla Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO28778 Eucalyptus viminalis Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO9138 Syzygium cumini Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO7698 Elettaria cardamomum Species Zingiberaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO28276 Artemisia argyi Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO28807 Laggera pterodonta Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO28688 Aster tataricus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO28669 Cuscuta australis Species Convolvulaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO28877 Scutellaria baicalensis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO4266 Botryotrichum murorum Species Chaetomiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1325 Bonnemaisonia asparagoides Species Bonnemaisoniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24010 Buglossoides arvensis Species Boraginaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1490 Goldfussia yunnanensis n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO7698 Elettaria cardamomum Species Zingiberaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28337 Pimpinella peregrina Species Apiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27604 Erythrina burttii Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9881 Petrosia hebes Species Petrosiidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28464 Mentha sylvestris Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28877 Scutellaria baicalensis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27968 Phoma linga Species Didymellaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28895 Pinus monticola Species Pinaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28701 Salvia lanigera Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27861 Laggera aurita Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28174 Poterium sanguisorba Species Rosaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28559 Julbernardia globifera Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12835 Cyrtomium falcatum Species Dryopteridaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27480 Pinna muricata Species Pinnidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28842 Oscillatoria raoi Species Oscillatoriaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO4628 Aloe deltoideodonta Species Asphodelaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28499 Aethalium septicum n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO28623 Phlox decussata Species Polemoniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20121 Afraegle paniculata Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28213 Humicola grisea Species Chaetomiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28435 Solanum crinitum Species Solanaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28074 Dianella revoluta Species Xanthorrhoeaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8977 Notholaena aschenborniana Species Pteridaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28127 Ursinia speciosa Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27220 Centaurea cheiranthifolia Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3357 Alnus cordata Species Betulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27681 Mikania grazielae Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28171 Anacyclus pyrethrum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28330 Colchicum arenarium Species Colchicaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28932 Myrrhis odorata Species Apiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23272 Cassinia subtropica Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28321 Cortinellus berkeleyanus n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO2455 Thermopsis mollis Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6828 Purpura aperta Species Muricidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9608 Lepraria citrina Species Stereocaulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28168 Armina maculata Species n.a. Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28326 Uncaria longiflora Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27334 Siphula roccellaeformis Species Icmadophilaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9367 Jacobaea argunensis Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28145 Dendrodoris limbata Species Dendrodorididae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28208 Salvia dichroa Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23092 Ammodendron karelinii Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12101 Ajuga genevensis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28191 Hardwickia pinnata Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14888 Pelargonium x hortorum Species Geraniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28765 Miliusa balansae Species Annonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO809 Leitneria floridana Species Simaroubaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21547 Crinum giganteum Species Amaryllidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8679 Streptomyces sparsogenes Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO28545 Scymnorhinus lichia n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO4094 Aspergillus ruber Species Aspergillaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8807 Laurentia longiflora n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO28578 Uperoleia inundata Species Myobatrachidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28280 Cetraria komarovii Species Parmeliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28555 Adina trichotoma Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28688 Aster tataricus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28305 Daphnandra johnsonii Species Atherospermataceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4382 Elmerrillia papuana n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO28061 Gyrothyra underwoodiana Species Gyrothyraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28414 Medicosma fareana Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25475 Syphonota geographica Species Aplysiidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27318 Sideritis lanata Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20443 Cratoxylum pruniflorum Species Hypericaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16098 Boronia pinnata Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8086 Lepechinia caulescens Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28124 Tamarix gallica Species Tamaricaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28778 Eucalyptus viminalis Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24144 Ophiomastix mixta Species Ophiocomidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27880 Mimusops laurifolia Species Sapotaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7890 Cleistanthus indochinensis Species Phyllanthaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28739 Othonna macrophylla Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28112 Amauris niavius Species Nymphalidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28641 Tubocapsicum anomalum Species Solanaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16983 Persea obovatifolia Species Lauraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27927 Alligator sinensis Species Alligatoridae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28489 Euphrasia regelii Species Orobanchaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28196 Brachylaena perrieri Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO195 Maprounea guianensis Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6457 Pinus strobus Species Pinaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27350 Scytalidium uredinicola Species n.a. Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28807 Laggera pterodonta Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27988 Salvia pisidica Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28006 Pinus pumila Species Pinaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27847 Suillus granulatus Species Suillaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28345 Cladanthus arabicus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9138 Syzygium cumini Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28669 Cuscuta australis Species Convolvulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28384 Ascotricha chartarum Species Xylariaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5635 Bauhinia purpurea Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28262 Marasmius graminum Species Marasmiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28253 Ceratiomyxa fruticulosa Species Ceratiomyxaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27878 Viola hondoensis Species Violaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28065 Pentachondra pumila Species Ericaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28512 Astragalus glycyphyllos Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28266 Phlomis ostrowskiana Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14130 Phagnalon rupestre Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28501 Hortonia angustifolia Species Monimiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27532 Lamprolobium fruticosum Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28378 Kokoona ochracea Species Celastraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1118 Elymus repens Species Poaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7869 Peritassa campestris Species Celastraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28433 Russula queletii Species Russulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27894 Rubus pungens Species Rosaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27517 Crinum latifolium Species Amaryllidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28233 Diplotropis ferruginea Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17288 Piliostigma thonningii Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28534 Athrixia elata Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28049 Piper callosum Species Piperaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17152 Pittocaulon bombycophole Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28855 Salix petiolaris Species Salicaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28276 Artemisia argyi Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15005 Sargassum muticum Species Sargassaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16927 Erodendrum neriifolium n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO28568 Hippeastrum aulicum Species Amaryllidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27689 Mentha pulegium Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6364 Pongamiopsis pervilleana Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15295 Polyachyrus sphaerocephalus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16067.1 Pseudotsuga sinensis var. wilsoniana Varieties Pinaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22142 Hippocratea excelsa Species n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO15319 Glochidion sphaerogynum Species Phyllanthaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8513 Pseudomonas fluorescens Species Pseudomonadaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO21904 Tarenaya spinosa Species Cleomaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28830 Acronychia haplophylla Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28139 Umbilicaria pustulata Species Umbilicariaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17282 Pinguicula vulgaris Species Lentibulariaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



  NP Quantity Composition/Concentration

Organism ID Organism Name Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



 Biological Activity

Molecular-level activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference

In vitro activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT91 Cell line KB Homo sapiens IC50 > 74000.0 nM PMID[17480099]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 > 74000.0 nM PMID[17480099]
NPT88 Organism Mycobacterium tuberculosis Mycobacterium tuberculosis MIC > 740700.0 nM PMID[17480099]
NPT20 Organism Candida albicans Candida albicans IC50 > 185100.0 nM PMID[17480099]

In vivo activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference





 Experimental ADME

Experiment Model Experiment Tissue ADME Type ADME Relation ADME Value ADME Unit Reference





 Experimental Toxicity

Quantitative toxicity

Experiment Model Experiment Organism Toxicity Type Toxicity Relation Toxicity Value Toxicity Unit Reference

Common Abbreviations:
LC: Lethal Concentration; LD: Lethal Dose; LT:Lethal Time; NOAEL: No-observed-adverse-effect Level; BMDL: Benchmark Dose Lower Confidence Limit; BMD: Benchmark Dose; BMC:Benchmark Concentration; LOAEL: Lowest Observed Adverse Effect Level; RfD:Reference Dose; RfC:Reference Concentration; MRL: Minimal Risk Level; MEG: Maximum Exposure Guideline; PAC: Protective Action Criteria

Categorical toxicity labels

Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption
Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP toxicity records from domain-specific databases. These databases include:
ToxValDB: a curated database that compiles quantitative toxicity values for chemicals from diverse public sources to support toxicological research and risk assessment.
TOXRIC: a comprehensive, free-to-access, online database providing toxicological/feature data. The toxicity labels are retrieved from this database. [PMID: 36400569]


  Chemically structural similarity

Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes approximately 50,000 NPs with experimentally-derived bioactivity available in NPASS)

Similarity is measured using the Tanimoto coefficient (Tc) , which compares the binary fingerprints of two molecules. Tc is calculated as the intersection divided by the union of '1' bits in the fingerprints, ranging from 0 to 1, with 1 indicating highest similarity.

●  The left chart: Distribution of similarity level between NPC312391 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.5 or Top200).

Similarity Score Similarity Level Natural Product ID
0.8085 Intermediate Similarity NPC324386
0.7708 Intermediate Similarity NPC482119
0.7708 Intermediate Similarity NPC482120
0.6939 Remote Similarity NPC243083
0.6939 Remote Similarity NPC13768
0.6939 Remote Similarity NPC287246
0.6727 Remote Similarity NPC1089
0.6727 Remote Similarity NPC39045
0.6667 Remote Similarity NPC255106
0.6667 Remote Similarity NPC194432
0.6667 Remote Similarity NPC235165
0.66 Remote Similarity NPC248372
0.66 Remote Similarity NPC204515
0.6471 Remote Similarity NPC150648
0.6154 Remote Similarity NPC37392
0.6154 Remote Similarity NPC177354
0.6078 Remote Similarity NPC476480
0.6078 Remote Similarity NPC213322
0.6078 Remote Similarity NPC84585
0.5932 Remote Similarity NPC470135
0.5882 Remote Similarity NPC265871
0.5882 Remote Similarity NPC205093
0.5741 Remote Similarity NPC215885
0.5741 Remote Similarity NPC110776
0.5741 Remote Similarity NPC110038
0.5672 Remote Similarity NPC97812
0.5672 Remote Similarity NPC600145
0.5672 Remote Similarity NPC605490
0.5672 Remote Similarity NPC605492
0.566 Remote Similarity NPC32441
0.566 Remote Similarity NPC482121
0.566 Remote Similarity NPC79943
0.566 Remote Similarity NPC270964
0.5593 Remote Similarity NPC109183
0.5588 Remote Similarity NPC317715
0.5536 Remote Similarity NPC2416
0.5536 Remote Similarity NPC271590
0.55 Remote Similarity NPC175504
0.5455 Remote Similarity NPC274784
0.5455 Remote Similarity NPC99597
0.5455 Remote Similarity NPC20709
0.541 Remote Similarity NPC176229
0.537 Remote Similarity NPC6407
0.537 Remote Similarity NPC482487
0.537 Remote Similarity NPC545184
0.5362 Remote Similarity NPC316960
0.5362 Remote Similarity NPC78835
0.5362 Remote Similarity NPC148945
0.5362 Remote Similarity NPC309512
0.5362 Remote Similarity NPC204561
0.5357 Remote Similarity NPC606248
0.5306 Remote Similarity NPC314329
0.5306 Remote Similarity NPC603208
0.5273 Remote Similarity NPC167624
0.5273 Remote Similarity NPC166482
0.52 Remote Similarity NPC228184
0.5185 Remote Similarity NPC182421
0.5179 Remote Similarity NPC300668
0.5179 Remote Similarity NPC480993
0.5179 Remote Similarity NPC107586
0.5179 Remote Similarity NPC296917
0.5179 Remote Similarity NPC329203
0.5179 Remote Similarity NPC222342
0.5179 Remote Similarity NPC170907
0.5161 Remote Similarity NPC470131
0.5161 Remote Similarity NPC470132
0.5094 Remote Similarity NPC329225
0.5094 Remote Similarity NPC147686
0.5088 Remote Similarity NPC321011
0.5088 Remote Similarity NPC324134
0.5088 Remote Similarity NPC294852
0.5088 Remote Similarity NPC476153
0.5088 Remote Similarity NPC40833
0.5088 Remote Similarity NPC188679
0.5085 Remote Similarity NPC35150
0.5085 Remote Similarity NPC106328
0.5079 Remote Similarity NPC125855

Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC312391 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.5 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.6939 Remote Similarity NPD1550 Phase 2
0.566 Remote Similarity NPD1552 Clinical (unspecified phase)
0.5306 Remote Similarity NPD1547 Clinical (unspecified phase)
0.5094 Remote Similarity NPD1549 Phase 2

Bioactivity similarity

  Bioactivity similarity

Similar Natural Products in NPASS

Similarity level is defined by Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.
Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data