Structure

Physi-Chem Properties

Molecular Weight:  150.1
Volume:  173.841
LogP:  3.259
LogD:  3.192
LogS:  -2.242
# Rotatable Bonds:  1
TPSA:  20.23
# H-Bond Aceptor:  1
# H-Bond Donor:  1
# Rings:  1
# Heavy Atoms:  1

MedChem Properties

QED Drug-Likeness Score:  0.652
Synthetic Accessibility Score:  1.768
Fsp3:  0.4
Lipinski Rule-of-5:  Accepted
Pfizer Rule:  Rejected
GSK Rule:  Accepted
BMS Rule:  0
Golden Triangle Rule:  Rejected
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -4.436
MDCK Permeability:  2.346128530916758e-05
Pgp-inhibitor:  0.007
Pgp-substrate:  0.006
Human Intestinal Absorption (HIA):  0.005
20% Bioavailability (F20%):  0.932
30% Bioavailability (F30%):  0.978

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.831
Plasma Protein Binding (PPB):  93.12810516357422%
Volume Distribution (VD):  2.569
Pgp-substrate:  8.521620750427246%

ADMET: Metabolism

CYP1A2-inhibitor:  0.936
CYP1A2-substrate:  0.953
CYP2C19-inhibitor:  0.753
CYP2C19-substrate:  0.749
CYP2C9-inhibitor:  0.517
CYP2C9-substrate:  0.877
CYP2D6-inhibitor:  0.851
CYP2D6-substrate:  0.878
CYP3A4-inhibitor:  0.329
CYP3A4-substrate:  0.437

ADMET: Excretion

Clearance (CL):  11.335
Half-life (T1/2):  0.671

ADMET: Toxicity

hERG Blockers:  0.012
Human Hepatotoxicity (H-HT):  0.031
Drug-inuced Liver Injury (DILI):  0.085
AMES Toxicity:  0.034
Rat Oral Acute Toxicity:  0.217
Maximum Recommended Daily Dose:  0.513
Skin Sensitization:  0.298
Carcinogencity:  0.269
Eye Corrosion:  0.94
Eye Irritation:  0.992
Respiratory Toxicity:  0.198

Download Data

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General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs  

  Natural Product: NPC312132

Natural Product ID:  NPC312132
Common Name*:   Carvacrol
IUPAC Name:   2-methyl-5-propan-2-ylphenol
Synonyms:   Carvacrol
Standard InCHIKey:  RECUKUPTGUEGMW-UHFFFAOYSA-N
Standard InCHI:  InChI=1S/C10H14O/c1-7(2)9-5-4-8(3)10(11)6-9/h4-7,11H,1-3H3
SMILES:  CC(C)c1ccc(C)c(c1)O
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL281202
PubChem CID:   10364
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000012] Lipids and lipid-like molecules
      • [CHEMONTID:0000259] Prenol lipids
        • [CHEMONTID:0001549] Monoterpenoids
          • [CHEMONTID:0000051] Aromatic monoterpenoids

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference
NPO29276 NPC312132 Other (raw) Essential Oil 900 900 900 mg/100g Database [DUKE]
NPO42012 NPC312132 Other Leaf 0.55 0.5 0.6 mg/100g Database [DUKE]
NPO8545 NPC312132 Other Plant 0.1 0.1 0.1 mg/100g Database [DUKE]
NPO14798 NPC312132 Other Plant 367.65 109.2 626.1 mg/100g Database [DUKE]
NPO17550 NPC312132 Other Plant 831 831 831 mg/100g Database [DUKE]
NPO29169 NPC312132 Other Plant 32.3 0.6 64 mg/100g Database [DUKE]
NPO12158 NPC312132 Other Plant 322.5 45 600 mg/100g Database [DUKE]
NPO19472 NPC312132 Other Plant 936.4 0.8 1872 mg/100g Database [DUKE]
NPO23226 NPC312132 n.a. Plant 866.25 7.5 1725 mg/100g Database [DUKE]
NPO17550 NPC312132 Other Shoot 1980.5 1542 2419 mg/100g Database [DUKE]
NPO15810 NPC312132 Raw Silk Stigma Style 18 14.4 21.6 mg/100g Database [DUKE]

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT30 Individual Protein Cyclooxygenase-1 Homo sapiens IC50 = 4000.0 nM PMID[558172]
NPT346 Individual Protein Transient receptor potential cation channel subfamily A member 1 Homo sapiens EC50 = 7000.0 nM PMID[558173]
NPT2691 Individual Protein Voltage-gated L-type calcium channel alpha-1C subunit Homo sapiens IC50 = 98000.0 nM PMID[558185]
NPT66 Individual Protein Acetylcholinesterase Electrophorus electricus IC50 = 288260.0 nM PMID[558186]
NPT43 Individual Protein Tyrosinase Agaricus bisporus IC50 > 500000.0 nM PMID[558189]
NPT43 Individual Protein Tyrosinase Agaricus bisporus Inhibition = 35.7 % PMID[558189]
NPT346 Individual Protein Transient receptor potential cation channel subfamily A member 1 Homo sapiens EC50 = 16595.87 nM PMID[558190]
NPT346 Individual Protein Transient receptor potential cation channel subfamily A member 1 Homo sapiens EC50 = 17000.0 nM PMID[558190]
NPT204 Individual Protein Acetylcholinesterase Homo sapiens IC50 = 283600.0 nM PMID[558195]
NPT32 Organism Mus musculus Mus musculus HD50 = 30.0 mg kg-1 PMID[558170]
NPT32 Organism Mus musculus Mus musculus LD50 = 80.0 mg.kg-1 PMID[558170]
NPT902 Individual Protein UDP-glucuronosyltransferase 1A4 Homo sapiens Km = 1500000.0 nM PMID[558171]
NPT901 Individual Protein UDP-glucuronosyltransferase 1-1 Homo sapiens Activity = 17.0 pm/min/mg PMID[558174]
NPT901 Individual Protein UDP-glucuronosyltransferase 1-1 Homo sapiens Activity = 0.0 pm/min/mg PMID[558174]
NPT699 Individual Protein UDP-glucuronosyltransferase 1-10 Homo sapiens Activity = 0.0 pm/min/mg PMID[558174]
NPT902 Individual Protein UDP-glucuronosyltransferase 1A4 Homo sapiens Activity = 30.0 pm/min/mg PMID[558174]
NPT702 Individual Protein UDP-glucuronosyltransferase 1-6 Homo sapiens Activity = 400.0 pm/min/mg PMID[558174]
NPT702 Individual Protein UDP-glucuronosyltransferase 1-6 Homo sapiens Activity = 0.0 pm/min/mg PMID[558174]
NPT695 Individual Protein UDP-glucuronosyltransferase 1-8 Homo sapiens Activity = 744.0 pm/min/mg PMID[558174]
NPT703 Individual Protein UDP-glucuronosyltransferase 1-9 Homo sapiens Activity = 2700.0 pm/min/mg PMID[558174]
NPT696 Individual Protein UDP-glucuronosyltransferase 2A1 Homo sapiens Activity = 0.0 pm/min/mg PMID[558174]
NPT704 Individual Protein UDP-glucuronosyltransferase 2B15 Homo sapiens Activity = 3.0 pm/min/mg PMID[558174]
NPT2 Others Unspecified LD50 = 33.3 ug PMID[558175]
NPT637 Organism Fusarium oxysporum Fusarium oxysporum MIC = 64.0 ug.mL-1 PMID[558175]
NPT2647 Organism Drechslera Drechslera MIC = 64.0 ug.mL-1 PMID[558175]
NPT1198 Organism Magnaporthe grisea Magnaporthe grisea MIC = 128.0 ug.mL-1 PMID[558175]
NPT5426 Organism Debaryomyces hansenii Debaryomyces hansenii MIC = 128.0 ug.mL-1 PMID[558175]
NPT610 Others Molecular identity unknown MIC = 128.0 ug.mL-1 PMID[558175]
NPT20 Organism Candida albicans Candida albicans GI = 128.0 ug ml-1 PMID[558175]
NPT554 Organism Candida glabrata Candida glabrata GI = 128.0 ug ml-1 PMID[558175]
NPT85 Organism Filobasidiella neoformans Cryptococcus neoformans GI = 128.0 ug ml-1 PMID[558175]
NPT27 Others Unspecified HC50 = 250.0 ug ml-1 PMID[558175]
NPT20 Organism Candida albicans Candida albicans GI = 256.0 ug ml-1 PMID[558175]
NPT2 Others Unspecified Inhibition = 70.0 % PMID[558176]
NPT2 Others Unspecified IC50 = 370000.0 nM PMID[558176]
NPT2 Others Unspecified Activity = 62.4 % PMID[558176]
NPT2 Others Unspecified IC50 = 360000.0 nM PMID[558176]
NPT2 Others Unspecified TIME = 0.0 hr PMID[558176]
NPT2 Others Unspecified TIME = 0.00000005556 hr PMID[558176]
NPT2 Others Unspecified TIME = 0.0000001667 hr PMID[558176]
NPT2 Others Unspecified TIME = 0.00000025 hr PMID[558176]
NPT2 Others Unspecified TIME = 0.0000004167 hr PMID[558176]
NPT2 Others Unspecified TIME = 0.0000004444 hr PMID[558176]
NPT2 Others Unspecified Activity = 0.0 V/s PMID[558176]
NPT2 Others Unspecified Activity = -4.5 V/s PMID[558176]
NPT2 Others Unspecified Activity = -48.0 V/s PMID[558176]
NPT2 Others Unspecified Activity = -62.7 V/s PMID[558176]
NPT2 Others Unspecified Activity = -78.9 V/s PMID[558176]
NPT2 Others Unspecified Activity = -102.2 V/s PMID[558176]
NPT2 Others Unspecified Activity = 4.4 V/s PMID[558176]
NPT2 Others Unspecified Activity = 56.5 V/s PMID[558176]
NPT2 Others Unspecified Activity = 84.4 V/s PMID[558176]
NPT2 Others Unspecified Activity = 94.8 V/s PMID[558176]
NPT2 Others Unspecified Activity = 128.6 V/s PMID[558176]
NPT2 Others Unspecified Activity = 20.8 Momega PMID[558176]
NPT2 Others Unspecified Activity = 26.3 Momega PMID[558176]
NPT2 Others Unspecified Activity = 23.3 Momega PMID[558176]
NPT2 Others Unspecified Activity = 27.1 Momega PMID[558176]
NPT2 Others Unspecified Activity = 26.7 Momega PMID[558176]
NPT2 Others Unspecified Activity = 29.3 Momega PMID[558176]
NPT2 Others Unspecified Activity = -57.5 mV PMID[558176]
NPT2 Others Unspecified Activity = -60.2 mV PMID[558176]
NPT2 Others Unspecified Activity = -59.7 mV PMID[558176]
NPT2 Others Unspecified Activity = -62.6 mV PMID[558176]
NPT2 Others Unspecified Activity = 0.0 mV PMID[558176]
NPT2 Others Unspecified Activity = 4.2 mV PMID[558176]
NPT2 Others Unspecified Activity = 32.1 mV PMID[558176]
NPT2 Others Unspecified Activity = 43.9 mV PMID[558176]
NPT2 Others Unspecified Activity = 53.9 mV PMID[558176]
NPT2 Others Unspecified Activity = 77.0 mV PMID[558176]
NPT2 Others Unspecified IC50 = 500000.0 nM PMID[558176]
NPT2 Others Unspecified Inhibition = 50.0 % PMID[558176]
NPT2 Others Unspecified Time = 75.0 microsec PMID[558176]
NPT2 Others Unspecified Activity = 4.16 V PMID[558176]
NPT35 Others n.a. LogP = 3.49 n.a. PMID[558177]
NPT1419 Organism Tribolium castaneum Tribolium castaneum Repellency = -6.0 % PMID[558177]
NPT1419 Organism Tribolium castaneum Tribolium castaneum Repellency = 8.0 % PMID[558177]
NPT1419 Organism Tribolium castaneum Tribolium castaneum Repellency = 5.0 % PMID[558177]
NPT1419 Organism Tribolium castaneum Tribolium castaneum Repellency = -3.0 % PMID[558177]
NPT1419 Organism Tribolium castaneum Tribolium castaneum Repellency = 9.0 % PMID[558177]
NPT1419 Organism Tribolium castaneum Tribolium castaneum Repellency = 48.0 % PMID[558177]
NPT1419 Organism Tribolium castaneum Tribolium castaneum Repellency = 46.0 % PMID[558177]
NPT1419 Organism Tribolium castaneum Tribolium castaneum Repellency = 86.0 % PMID[558177]
NPT1419 Organism Tribolium castaneum Tribolium castaneum Repellency = 90.0 % PMID[558177]
NPT449 Organism Meloidogyne javanica Meloidogyne javanica EC50 = 0.128 uL/ml PMID[558178]
NPT450 Organism Meloidogyne incognita Meloidogyne incognita EC50 = 117.0 ug.mL-1 PMID[558178]
NPT450 Organism Meloidogyne incognita Meloidogyne incognita EC50 = 176.0 ug.mL-1 PMID[558178]
NPT450 Organism Meloidogyne incognita Meloidogyne incognita EC50 = 264.0 ug.mL-1 PMID[558178]
NPT635 Organism Botryotinia fuckeliana Botryotinia fuckeliana GI = 36.9 % PMID[558179]
NPT562 Organism Colletotrichum gloeosporioides Colletotrichum gloeosporioides IZ = 3.5 mm PMID[558180]
NPT851 Organism Colletotrichum fragariae Colletotrichum fragariae IZ = 3.4 mm PMID[558180]
NPT1096 Organism Colletotrichum acutatum Colletotrichum acutatum IZ = 4.5 mm PMID[558180]
NPT529 Organism Rhizoctonia solani Rhizoctonia solani EC50 = 41.0 ug.mL-1 PMID[558181]
NPT734 Organism Musca domestica Musca domestica LD50 = 60.1 ug PMID[558182]
NPT735 Individual Protein GABA receptor subunit Musca domestica Activity = 156.0 % PMID[558182]
NPT1 Others Radical scavenging activity Activity = 37.41 % PMID[558183]
NPT1 Others Radical scavenging activity Activity = 27.45 % PMID[558183]
NPT1 Others Radical scavenging activity Activity = 18.44 % PMID[558183]
NPT1 Others Radical scavenging activity Activity = 9.91 % PMID[558183]
NPT1 Others Radical scavenging activity Activity = 5.17 % PMID[558183]
NPT1 Others Radical scavenging activity IC50 = 131.24 ug.mL-1 PMID[558183]
NPT32 Organism Mus musculus Mus musculus TIME = 0.25 hr PMID[558184]
NPT32 Organism Mus musculus Mus musculus ED50 = 35.8 mg.kg-1 PMID[558184]
NPT32 Organism Mus musculus Mus musculus TIME = 6.0 hr PMID[558184]
NPT32 Organism Mus musculus Mus musculus TD50 = 190.9 mg kg-1 PMID[558184]
NPT32 Organism Mus musculus Mus musculus Ratio TD50/ED50 = 5.3 n.a. PMID[558184]
NPT32 Organism Mus musculus Mus musculus Inhibition = 40.0 % PMID[558184]
NPT32 Organism Mus musculus Mus musculus Inhibition = 20.0 % PMID[558184]
NPT67 Individual Protein Cholinesterase Equus caballus IC50 = 410790.0 nM PMID[558186]
NPT2 Others Unspecified IC50 = 1060.0 nM PMID[558187]
NPT16 Organism Staphylococcus aureus Staphylococcus aureus MIC = 1.25 ug.mL-1 PMID[558188]
NPT19 Organism Escherichia coli Escherichia coli MIC = 2.5 ug.mL-1 PMID[558188]
NPT35 Others n.a. Ratio = 0.87 n.a. PMID[558191]
NPT747 Organism Acinetobacter baumannii Acinetobacter baumannii MIC90 = 256.0 ug.mL-1 PMID[558192]
NPT747 Organism Acinetobacter baumannii Acinetobacter baumannii MIC50 = 128.0 ug.mL-1 PMID[558192]
NPT1118 Organism Streptococcus pneumoniae Streptococcus pneumoniae MIC90 = 256.0 ug.mL-1 PMID[558192]
NPT1118 Organism Streptococcus pneumoniae Streptococcus pneumoniae MIC50 = 128.0 ug.mL-1 PMID[558192]
NPT1228 Organism Streptococcus pyogenes Streptococcus pyogenes MIC90 = 256.0 ug.mL-1 PMID[558192]
NPT1228 Organism Streptococcus pyogenes Streptococcus pyogenes MIC50 = 128.0 ug.mL-1 PMID[558192]
NPT2710 Organism Streptococcus agalactiae Streptococcus agalactiae MIC90 = 512.0 ug.mL-1 PMID[558192]
NPT2710 Organism Streptococcus agalactiae Streptococcus agalactiae MIC50 = 256.0 ug.mL-1 PMID[558192]
NPT175 Organism Enterococcus faecalis Enterococcus faecalis MIC90 = 256.0 ug.mL-1 PMID[558192]
NPT175 Organism Enterococcus faecalis Enterococcus faecalis MIC50 = 256.0 ug.mL-1 PMID[558192]
NPT17 Organism Staphylococcus epidermidis Staphylococcus epidermidis MIC90 = 256.0 ug.mL-1 PMID[558192]
NPT17 Organism Staphylococcus epidermidis Staphylococcus epidermidis MIC50 = 256.0 ug.mL-1 PMID[558192]
NPT16 Organism Staphylococcus aureus Staphylococcus aureus MIC90 = 256.0 ug.mL-1 PMID[558192]
NPT16 Organism Staphylococcus aureus Staphylococcus aureus MIC50 = 256.0 ug.mL-1 PMID[558192]
NPT1228 Organism Streptococcus pyogenes Streptococcus pyogenes MIC = 64.0 ug.mL-1 PMID[558192]
NPT35 Others n.a. LogP = 3.5 n.a. PMID[558192]
NPT2580 Organism Candida dubliniensis Candida dubliniensis IZ = 7.0 mm PMID[558192]
NPT554 Organism Candida glabrata Candida glabrata IZ = 8.0 mm PMID[558192]
NPT188 Organism Candida parapsilosis Candida parapsilosis IZ = 7.0 mm PMID[558192]
NPT186 Organism Candida tropicalis Candida tropicalis IZ = 10.0 mm PMID[558192]
NPT20 Organism Candida albicans Candida albicans IZ = 9.0 mm PMID[558192]
NPT20 Organism Candida albicans Candida albicans MIC = 1250.0 ug.mL-1 PMID[558192]
NPT747 Organism Acinetobacter baumannii Acinetobacter baumannii MIC = 64.0 ug.mL-1 PMID[558192]
NPT18 Organism Pseudomonas aeruginosa Pseudomonas aeruginosa MIC90 > 512.0 ug.mL-1 PMID[558192]
NPT18 Organism Pseudomonas aeruginosa Pseudomonas aeruginosa MIC50 > 512.0 ug.mL-1 PMID[558192]
NPT18 Organism Pseudomonas aeruginosa Pseudomonas aeruginosa MIC >= 512.0 ug.mL-1 PMID[558192]
NPT173 Organism Klebsiella pneumoniae Klebsiella pneumoniae MIC90 = 512.0 ug.mL-1 PMID[558192]
NPT173 Organism Klebsiella pneumoniae Klebsiella pneumoniae MIC50 = 512.0 ug.mL-1 PMID[558192]
NPT173 Organism Klebsiella pneumoniae Klebsiella pneumoniae MIC = 512.0 ug.mL-1 PMID[558192]
NPT19 Organism Escherichia coli Escherichia coli MIC90 = 256.0 ug.mL-1 PMID[558192]
NPT19 Organism Escherichia coli Escherichia coli MIC50 = 256.0 ug.mL-1 PMID[558192]
NPT19 Organism Escherichia coli Escherichia coli MIC = 256.0 ug.mL-1 PMID[558192]
NPT2710 Organism Streptococcus agalactiae Streptococcus agalactiae MIC = 256.0 ug.mL-1 PMID[558192]
NPT1118 Organism Streptococcus pneumoniae Streptococcus pneumoniae MIC = 64.0 ug.mL-1 PMID[558192]
NPT175 Organism Enterococcus faecalis Enterococcus faecalis MIC = 128.0 ug.mL-1 PMID[558192]
NPT17 Organism Staphylococcus epidermidis Staphylococcus epidermidis MIC = 256.0 ug.mL-1 PMID[558192]
NPT16 Organism Staphylococcus aureus Staphylococcus aureus MIC = 256.0 ug.mL-1 PMID[558192]
NPT20556 SINGLE PROTEIN Replicase polyprotein 1ab Severe acute respiratory syndrome coronavirus 2 Inhibition = 21.29 % PMID[558193]
NPT20555 ORGANISM SARS-CoV-2 Severe acute respiratory syndrome coronavirus 2 Inhibition = 0.12 % PMID[558194]
NPT2 Others Unspecified Potency n.a. 48557.7 nM PubChem BioAssay data set
NPT74 Individual Protein Proto-oncogene c-JUN Homo sapiens Potency n.a. 54941 nM PubChem BioAssay data set
NPT27971 TISSUE Sciatic nerve Rattus norvegicus IC50 = 500000.0 nM PMID[558176]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC312132 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC259512
0.989 High Similarity NPC6597
0.989 High Similarity NPC79241
0.9677 High Similarity NPC72729
0.957 High Similarity NPC33675
0.957 High Similarity NPC299762
0.9556 High Similarity NPC231150
0.9375 High Similarity NPC475225
0.9368 High Similarity NPC252105
0.9348 High Similarity NPC245187
0.9271 High Similarity NPC235762
0.9271 High Similarity NPC471228
0.9263 High Similarity NPC174911
0.9239 High Similarity NPC55903
0.9222 High Similarity NPC27974
0.914 High Similarity NPC152415
0.913 High Similarity NPC304541
0.913 High Similarity NPC306074
0.9111 High Similarity NPC407
0.9111 High Similarity NPC307235
0.9091 High Similarity NPC66834
0.9082 High Similarity NPC47284
0.9082 High Similarity NPC117115
0.9053 High Similarity NPC77492
0.9043 High Similarity NPC8392
0.9032 High Similarity NPC147284
0.9032 High Similarity NPC162314
0.9032 High Similarity NPC3358
0.9032 High Similarity NPC94139
0.9032 High Similarity NPC210497
0.9032 High Similarity NPC306884
0.9022 High Similarity NPC192
0.9 High Similarity NPC64586
0.9 High Similarity NPC155393
0.899 High Similarity NPC310456
0.899 High Similarity NPC21594
0.899 High Similarity NPC53740
0.898 High Similarity NPC272029
0.898 High Similarity NPC238696
0.898 High Similarity NPC475580
0.8969 High Similarity NPC12221
0.8969 High Similarity NPC477685
0.8913 High Similarity NPC258219
0.8911 High Similarity NPC58865
0.89 High Similarity NPC151477
0.8889 High Similarity NPC150837
0.8889 High Similarity NPC286904
0.8866 High Similarity NPC248396
0.8866 High Similarity NPC129373
0.8866 High Similarity NPC48730
0.8854 High Similarity NPC152097
0.8854 High Similarity NPC156313
0.8842 High Similarity NPC222146
0.883 High Similarity NPC29373
0.883 High Similarity NPC271440
0.8812 High Similarity NPC306295
0.8804 High Similarity NPC19680
0.8788 High Similarity NPC218879
0.8788 High Similarity NPC244513
0.8788 High Similarity NPC227458
0.8776 High Similarity NPC80800
0.8763 High Similarity NPC252821
0.8763 High Similarity NPC122005
0.8763 High Similarity NPC260775
0.8738 High Similarity NPC224527
0.8737 High Similarity NPC76938
0.8737 High Similarity NPC316301
0.8737 High Similarity NPC27323
0.8737 High Similarity NPC289769
0.8725 High Similarity NPC299568
0.8725 High Similarity NPC186385
0.8723 High Similarity NPC155908
0.8723 High Similarity NPC204210
0.8713 High Similarity NPC158253
0.8713 High Similarity NPC232523
0.8713 High Similarity NPC204901
0.8713 High Similarity NPC320439
0.871 High Similarity NPC242240
0.871 High Similarity NPC318325
0.871 High Similarity NPC123273
0.87 High Similarity NPC37802
0.8696 High Similarity NPC23167
0.8687 High Similarity NPC269212
0.8687 High Similarity NPC108497
0.8673 High Similarity NPC70677
0.8673 High Similarity NPC130756
0.8673 High Similarity NPC12931
0.8673 High Similarity NPC225506
0.866 High Similarity NPC474073
0.866 High Similarity NPC475078
0.8654 High Similarity NPC250323
0.8654 High Similarity NPC228452
0.8646 High Similarity NPC32714
0.8646 High Similarity NPC274678
0.8641 High Similarity NPC132720
0.8627 High Similarity NPC174981
0.8614 High Similarity NPC201662
0.8614 High Similarity NPC99836
0.8614 High Similarity NPC12640
0.8602 High Similarity NPC25493
0.8602 High Similarity NPC113460
0.8587 High Similarity NPC197783
0.8571 High Similarity NPC715
0.8558 High Similarity NPC266937
0.8558 High Similarity NPC260323
0.8558 High Similarity NPC470770
0.8558 High Similarity NPC54373
0.8558 High Similarity NPC77772
0.8558 High Similarity NPC176279
0.8558 High Similarity NPC469912
0.8558 High Similarity NPC151537
0.8557 High Similarity NPC202986
0.8544 High Similarity NPC19808
0.8544 High Similarity NPC33728
0.8544 High Similarity NPC314187
0.8542 High Similarity NPC128062
0.8515 High Similarity NPC471350
0.8511 High Similarity NPC177420
0.8511 High Similarity NPC280347
0.8511 High Similarity NPC70436
0.85 High Similarity NPC168393
0.85 High Similarity NPC233827
0.85 High Similarity NPC24327
0.85 High Similarity NPC12870
0.8491 Intermediate Similarity NPC195922
0.8485 Intermediate Similarity NPC130103
0.8485 Intermediate Similarity NPC211885
0.8478 Intermediate Similarity NPC248817
0.8478 Intermediate Similarity NPC175313
0.8476 Intermediate Similarity NPC177962
0.8476 Intermediate Similarity NPC46940
0.8476 Intermediate Similarity NPC62867
0.8476 Intermediate Similarity NPC302371
0.8476 Intermediate Similarity NPC26615
0.8469 Intermediate Similarity NPC225464
0.8469 Intermediate Similarity NPC32674
0.8462 Intermediate Similarity NPC141782
0.8462 Intermediate Similarity NPC168855
0.8462 Intermediate Similarity NPC224870
0.8462 Intermediate Similarity NPC13482
0.8454 Intermediate Similarity NPC144682
0.8447 Intermediate Similarity NPC11554
0.8431 Intermediate Similarity NPC54765
0.8431 Intermediate Similarity NPC155072
0.8431 Intermediate Similarity NPC271274
0.8431 Intermediate Similarity NPC469913
0.8421 Intermediate Similarity NPC55561
0.8421 Intermediate Similarity NPC312304
0.8416 Intermediate Similarity NPC120719
0.8416 Intermediate Similarity NPC102216
0.8416 Intermediate Similarity NPC323810
0.8411 Intermediate Similarity NPC246760
0.8411 Intermediate Similarity NPC84999
0.84 Intermediate Similarity NPC51015
0.8396 Intermediate Similarity NPC23804
0.8396 Intermediate Similarity NPC190212
0.8396 Intermediate Similarity NPC319803
0.8384 Intermediate Similarity NPC92730
0.8384 Intermediate Similarity NPC128723
0.8381 Intermediate Similarity NPC95716
0.837 Intermediate Similarity NPC474354
0.837 Intermediate Similarity NPC124436
0.837 Intermediate Similarity NPC265146
0.8367 Intermediate Similarity NPC292730
0.8367 Intermediate Similarity NPC473388
0.8367 Intermediate Similarity NPC132271
0.8367 Intermediate Similarity NPC82664
0.8367 Intermediate Similarity NPC216520
0.835 Intermediate Similarity NPC474352
0.8333 Intermediate Similarity NPC138942
0.8333 Intermediate Similarity NPC239291
0.8333 Intermediate Similarity NPC45040
0.8318 Intermediate Similarity NPC249270
0.8317 Intermediate Similarity NPC249828
0.8317 Intermediate Similarity NPC146798
0.8317 Intermediate Similarity NPC24404
0.8317 Intermediate Similarity NPC313030
0.8317 Intermediate Similarity NPC168829
0.8317 Intermediate Similarity NPC71002
0.8317 Intermediate Similarity NPC85479
0.8317 Intermediate Similarity NPC106396
0.8317 Intermediate Similarity NPC222522
0.8317 Intermediate Similarity NPC168303
0.8317 Intermediate Similarity NPC302219
0.8317 Intermediate Similarity NPC242342
0.8317 Intermediate Similarity NPC94351
0.8317 Intermediate Similarity NPC53051
0.8302 Intermediate Similarity NPC166995
0.8302 Intermediate Similarity NPC471179
0.83 Intermediate Similarity NPC10588
0.83 Intermediate Similarity NPC294741
0.83 Intermediate Similarity NPC166761
0.8298 Intermediate Similarity NPC184169
0.8286 Intermediate Similarity NPC296683
0.8283 Intermediate Similarity NPC109955
0.8283 Intermediate Similarity NPC88420
0.828 Intermediate Similarity NPC93843
0.828 Intermediate Similarity NPC474211
0.8269 Intermediate Similarity NPC95344
0.8265 Intermediate Similarity NPC26244

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC312132 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
1.0 High Similarity NPD288 Approved
0.967 High Similarity NPD844 Approved
0.9062 High Similarity NPD289 Clinical (unspecified phase)
0.9032 High Similarity NPD845 Approved
0.8737 High Similarity NPD1432 Clinical (unspecified phase)
0.8725 High Similarity NPD4750 Phase 3
0.8571 High Similarity NPD3020 Approved
0.8529 High Similarity NPD2342 Discontinued
0.8476 Intermediate Similarity NPD7635 Approved
0.8454 Intermediate Similarity NPD1809 Phase 2
0.8431 Intermediate Similarity NPD1445 Approved
0.8431 Intermediate Similarity NPD1444 Approved
0.837 Intermediate Similarity NPD111 Approved
0.8265 Intermediate Similarity NPD2859 Approved
0.8265 Intermediate Similarity NPD2860 Approved
0.8218 Intermediate Similarity NPD940 Approved
0.8218 Intermediate Similarity NPD846 Approved
0.819 Intermediate Similarity NPD3022 Approved
0.819 Intermediate Similarity NPD3021 Approved
0.819 Intermediate Similarity NPD1792 Phase 2
0.8163 Intermediate Similarity NPD2934 Approved
0.8163 Intermediate Similarity NPD2933 Approved
0.7788 Intermediate Similarity NPD9500 Approved
0.7767 Intermediate Similarity NPD1242 Phase 1
0.7748 Intermediate Similarity NPD6671 Approved
0.7699 Intermediate Similarity NPD3091 Approved
0.7658 Intermediate Similarity NPD1791 Approved
0.7658 Intermediate Similarity NPD497 Approved
0.7658 Intermediate Similarity NPD1793 Approved
0.7607 Intermediate Similarity NPD4749 Approved
0.7573 Intermediate Similarity NPD9273 Approved
0.7568 Intermediate Similarity NPD496 Approved
0.7568 Intermediate Similarity NPD2234 Approved
0.7568 Intermediate Similarity NPD498 Approved
0.7568 Intermediate Similarity NPD2229 Approved
0.7568 Intermediate Similarity NPD2228 Approved
0.7568 Intermediate Similarity NPD495 Approved
0.7565 Intermediate Similarity NPD3019 Approved
0.7565 Intermediate Similarity NPD4059 Approved
0.7565 Intermediate Similarity NPD1751 Approved
0.7565 Intermediate Similarity NPD4626 Approved
0.7565 Intermediate Similarity NPD2932 Approved
0.7556 Intermediate Similarity NPD9087 Approved
0.7547 Intermediate Similarity NPD9608 Approved
0.7547 Intermediate Similarity NPD9610 Approved
0.7545 Intermediate Similarity NPD228 Approved
0.7544 Intermediate Similarity NPD2226 Clinical (unspecified phase)
0.7522 Intermediate Similarity NPD7325 Clinical (unspecified phase)
0.75 Intermediate Similarity NPD1476 Clinical (unspecified phase)
0.7478 Intermediate Similarity NPD4093 Discontinued
0.7458 Intermediate Similarity NPD3600 Clinical (unspecified phase)
0.7436 Intermediate Similarity NPD3092 Approved
0.7436 Intermediate Similarity NPD1201 Approved
0.7414 Intermediate Similarity NPD2286 Discontinued
0.7391 Intermediate Similarity NPD5304 Approved
0.7391 Intermediate Similarity NPD5303 Approved
0.7387 Intermediate Similarity NPD6124 Clinical (unspecified phase)
0.7368 Intermediate Similarity NPD405 Clinical (unspecified phase)
0.7345 Intermediate Similarity NPD9614 Approved
0.7345 Intermediate Similarity NPD9618 Approved
0.7321 Intermediate Similarity NPD9379 Approved
0.7321 Intermediate Similarity NPD9377 Approved
0.7312 Intermediate Similarity NPD9294 Approved
0.729 Intermediate Similarity NPD5700 Clinical (unspecified phase)
0.7288 Intermediate Similarity NPD5351 Clinical (unspecified phase)
0.7288 Intermediate Similarity NPD5350 Clinical (unspecified phase)
0.7281 Intermediate Similarity NPD709 Approved
0.7273 Intermediate Similarity NPD6917 Clinical (unspecified phase)
0.7265 Intermediate Similarity NPD4589 Approved
0.7265 Intermediate Similarity NPD3095 Discontinued
0.7264 Intermediate Similarity NPD1616 Discontinued
0.7257 Intermediate Similarity NPD1398 Phase 1
0.7257 Intermediate Similarity NPD7159 Clinical (unspecified phase)
0.725 Intermediate Similarity NPD6696 Suspended
0.7236 Intermediate Similarity NPD4625 Phase 3
0.7234 Intermediate Similarity NPD9088 Approved
0.7227 Intermediate Similarity NPD2230 Approved
0.7227 Intermediate Similarity NPD2233 Approved
0.7227 Intermediate Similarity NPD2232 Approved
0.7217 Intermediate Similarity NPD7340 Approved
0.7203 Intermediate Similarity NPD1981 Approved
0.7203 Intermediate Similarity NPD1983 Approved
0.7203 Intermediate Similarity NPD1980 Approved
0.7193 Intermediate Similarity NPD475 Phase 2
0.719 Intermediate Similarity NPD1470 Approved
0.719 Intermediate Similarity NPD3094 Phase 2
0.7182 Intermediate Similarity NPD290 Approved
0.7179 Intermediate Similarity NPD5691 Approved
0.7177 Intermediate Similarity NPD6410 Clinical (unspecified phase)
0.7155 Intermediate Similarity NPD9615 Approved
0.7155 Intermediate Similarity NPD9616 Approved
0.7155 Intermediate Similarity NPD9613 Approved
0.7143 Intermediate Similarity NPD1610 Phase 2
0.7131 Intermediate Similarity NPD2195 Approved
0.7131 Intermediate Similarity NPD2194 Approved
0.7119 Intermediate Similarity NPD1778 Approved
0.7107 Intermediate Similarity NPD1283 Approved
0.7105 Intermediate Similarity NPD5283 Phase 1
0.7103 Intermediate Similarity NPD3028 Approved
0.7094 Intermediate Similarity NPD316 Approved
0.7091 Intermediate Similarity NPD968 Approved
0.7073 Intermediate Similarity NPD2861 Phase 2
0.7073 Intermediate Similarity NPD3636 Approved
0.7073 Intermediate Similarity NPD5736 Approved
0.7073 Intermediate Similarity NPD3637 Approved
0.7073 Intermediate Similarity NPD3635 Approved
0.7054 Intermediate Similarity NPD9380 Clinical (unspecified phase)
0.703 Intermediate Similarity NPD1101 Approved
0.7025 Intermediate Similarity NPD1755 Approved
0.7018 Intermediate Similarity NPD1138 Approved
0.7016 Intermediate Similarity NPD2606 Approved
0.7016 Intermediate Similarity NPD2605 Approved
0.7 Intermediate Similarity NPD1611 Approved
0.6991 Remote Similarity NPD9280 Clinical (unspecified phase)
0.6983 Remote Similarity NPD256 Approved
0.6983 Remote Similarity NPD255 Approved
0.6964 Remote Similarity NPD9266 Approved
0.6964 Remote Similarity NPD2684 Approved
0.6964 Remote Similarity NPD74 Approved
0.696 Remote Similarity NPD5155 Approved
0.696 Remote Similarity NPD5156 Approved
0.6953 Remote Similarity NPD4097 Suspended
0.6949 Remote Similarity NPD7330 Discontinued
0.6942 Remote Similarity NPD1608 Approved
0.6939 Remote Similarity NPD9089 Approved
0.6935 Remote Similarity NPD1712 Approved
0.693 Remote Similarity NPD1137 Approved
0.693 Remote Similarity NPD1139 Approved
0.6929 Remote Similarity NPD4060 Phase 1
0.6923 Remote Similarity NPD9493 Approved
0.6917 Remote Similarity NPD3026 Approved
0.6917 Remote Similarity NPD3023 Approved
0.6917 Remote Similarity NPD3496 Discontinued
0.6911 Remote Similarity NPD4339 Clinical (unspecified phase)
0.6909 Remote Similarity NPD9244 Approved
0.6893 Remote Similarity NPD1090 Approved
0.6893 Remote Similarity NPD1086 Approved
0.6893 Remote Similarity NPD1089 Approved
0.6891 Remote Similarity NPD4235 Clinical (unspecified phase)
0.6891 Remote Similarity NPD4196 Clinical (unspecified phase)
0.6891 Remote Similarity NPD1651 Approved
0.6891 Remote Similarity NPD3024 Approved
0.6891 Remote Similarity NPD3025 Approved
0.6881 Remote Similarity NPD4817 Approved
0.6881 Remote Similarity NPD4818 Approved
0.688 Remote Similarity NPD3594 Approved
0.688 Remote Similarity NPD4908 Phase 1
0.688 Remote Similarity NPD3595 Approved
0.6875 Remote Similarity NPD9264 Approved
0.6875 Remote Similarity NPD9267 Approved
0.6875 Remote Similarity NPD9263 Approved
0.686 Remote Similarity NPD1281 Approved
0.6855 Remote Similarity NPD4624 Approved
0.685 Remote Similarity NPD6663 Approved
0.6838 Remote Similarity NPD7157 Approved
0.6837 Remote Similarity NPD9093 Approved
0.6833 Remote Similarity NPD9384 Approved
0.6833 Remote Similarity NPD5238 Clinical (unspecified phase)
0.6833 Remote Similarity NPD9381 Approved
0.6833 Remote Similarity NPD2667 Approved
0.6833 Remote Similarity NPD2668 Approved
0.6807 Remote Similarity NPD1548 Phase 1
0.6807 Remote Similarity NPD1759 Phase 1
0.6796 Remote Similarity NPD9295 Approved
0.6796 Remote Similarity NPD800 Approved
0.6794 Remote Similarity NPD6100 Approved
0.6794 Remote Similarity NPD6099 Approved
0.6792 Remote Similarity NPD1693 Approved
0.678 Remote Similarity NPD7636 Approved
0.6777 Remote Similarity NPD3143 Discontinued
0.6777 Remote Similarity NPD2688 Clinical (unspecified phase)
0.6774 Remote Similarity NPD1164 Approved
0.6774 Remote Similarity NPD2797 Approved
0.6772 Remote Similarity NPD4907 Clinical (unspecified phase)
0.6769 Remote Similarity NPD7718 Clinical (unspecified phase)
0.6762 Remote Similarity NPD1088 Approved
0.6748 Remote Similarity NPD9622 Approved
0.6746 Remote Similarity NPD1529 Clinical (unspecified phase)
0.6733 Remote Similarity NPD9073 Approved
0.6726 Remote Similarity NPD9265 Clinical (unspecified phase)
0.6724 Remote Similarity NPD821 Approved
0.6724 Remote Similarity NPD7843 Approved
0.6723 Remote Similarity NPD1758 Phase 1
0.6723 Remote Similarity NPD856 Approved
0.6723 Remote Similarity NPD16 Approved
0.6723 Remote Similarity NPD318 Approved
0.6723 Remote Similarity NPD317 Approved
0.6721 Remote Similarity NPD422 Phase 1
0.672 Remote Similarity NPD257 Approved
0.672 Remote Similarity NPD258 Approved
0.672 Remote Similarity NPD6584 Phase 3
0.6718 Remote Similarity NPD1509 Clinical (unspecified phase)
0.6718 Remote Similarity NPD3299 Clinical (unspecified phase)
0.6698 Remote Similarity NPD1409 Phase 3
0.6695 Remote Similarity NPD6387 Discontinued
0.6694 Remote Similarity NPD17 Approved
0.6694 Remote Similarity NPD9634 Clinical (unspecified phase)
0.6692 Remote Similarity NPD4256 Phase 2
0.6692 Remote Similarity NPD4257 Approved
0.6667 Remote Similarity NPD1530 Clinical (unspecified phase)

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data