Natural Product: NPC307583
Natural Product ID:   | NPC307583 |
Common Name*:   | XUBYZJHAYIWTHA-UHFFFAOYSA-N |
IUPAC Name:   | n.a. |
Synonyms:   | |
Standard InCHIKey:   | XUBYZJHAYIWTHA-UHFFFAOYSA-N |
Standard InCHI:   | InChI=1S/C16H12O6/c1-7-4-8(2-3-9(7)17)12-5-10(18)14-13(22-12)6-11(19)15(20)16(14)21/h2-6,17,19-21H,1H3 |
SMILES:   | Cc1cc(ccc1O)c1cc(=O)c2c(cc(c(c2O)O)O)o1
|
Synthetic Gene Cluster:   |
n.a. |
ChEMBL Identifier:   |
n.a. |
PubChem CID:   |
n.a. |
Chemical Classification**:   |
-
CHEMONTID:0000000 [Organic compounds]
-
[CHEMONTID:0000261] Phenylpropanoids and polyketides
-
[CHEMONTID:0000334] Flavonoids
[CHEMONTID:0001615] Flavones
|
*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.
  Species Source
Organism ID |
Organism Name |
Taxonomy Level |
Family |
SuperKingdom |
Isolation Part |
Collection Location |
Collection Time |
Reference |
NPO10031 |
Euphorbia antiquorum |
Species |
Euphorbiaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
PMID[11858748] |
NPO16076 |
Penicillium chrysogenum |
Species |
Aspergillaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
PMID[1367520] |
NPO16076 |
Penicillium chrysogenum |
Species |
Aspergillaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
PMID[15974609] |
NPO13010 |
Allium stipitatum |
Species |
Amaryllidaceae |
Eukaryota |
n.a. |
bulb |
n.a. |
PMID[19093848] |
NPO13010 |
Allium stipitatum |
Species |
Amaryllidaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
PMID[19093848] |
NPO16076 |
Penicillium chrysogenum |
Species |
Aspergillaceae |
Eukaryota |
n.a. |
mycelium |
n.a. |
PMID[21381678] |
NPO16076 |
Penicillium chrysogenum |
Species |
Aspergillaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
PMID[21667925] |
NPO16076 |
Penicillium chrysogenum |
Species |
Aspergillaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
PMID[22118684] |
NPO27031 |
Methanosarcina barkeri |
Species |
Methanosarcinaceae |
Archaea |
n.a. |
n.a. |
n.a. |
PMID[24669201] |
NPO10031 |
Euphorbia antiquorum |
Species |
Euphorbiaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
PMID[24840014] |
NPO3477 |
Plantago asiatica |
Species |
Plantaginaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
PMID[2488968] |
NPO3477 |
Plantago asiatica |
Species |
Plantaginaceae |
Eukaryota |
n.a. |
seed |
n.a. |
PMID[2610694] |
NPO16076 |
Penicillium chrysogenum |
Species |
Aspergillaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
PMID[26692349] |
NPO10031 |
Euphorbia antiquorum |
Species |
Euphorbiaceae |
Eukaryota |
Stems |
n.a. |
n.a. |
PMID[31180680] |
NPO16076 |
Penicillium chrysogenum |
Species |
Aspergillaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
PMID[33089690] |
NPO16076 |
Penicillium chrysogenum |
Species |
Aspergillaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
PMID[8626236] |
NPO5995 |
Spartium junceum |
Species |
Fabaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[HerDing] |
NPO3477 |
Plantago asiatica |
Species |
Plantaginaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[HerDing] |
NPO14327 |
Scabiosa comosa |
Species |
Caprifoliaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[HerDing] |
NPO10031 |
Euphorbia antiquorum |
Species |
Euphorbiaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[HerDing] |
NPO5137 |
Myristica malabarica |
Species |
Myristicaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[HerDing] |
NPO14614 |
Kopsia longiflora |
Species |
Apocynaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[HerDing] |
NPO14614 |
Kopsia longiflora |
Species |
Apocynaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCMID] |
NPO5137 |
Myristica malabarica |
Species |
Myristicaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCMID] |
NPO9917 |
Plagiomnium cuspidatum |
Species |
Mniaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCMID] |
NPO14327 |
Scabiosa comosa |
Species |
Caprifoliaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCMID] |
NPO5995 |
Spartium junceum |
Species |
Fabaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCMID] |
NPO10031 |
Euphorbia antiquorum |
Species |
Euphorbiaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCMID] |
NPO3477 |
Plantago asiatica |
Species |
Plantaginaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCMID] |
NPO14327 |
Scabiosa comosa |
Species |
Caprifoliaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCM_Taiwan] |
NPO5995 |
Spartium junceum |
Species |
Fabaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCM_Taiwan] |
NPO3477 |
Plantago asiatica |
Species |
Plantaginaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCM_Taiwan] |
NPO3477 |
Plantago asiatica |
Species |
Plantaginaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TM-MC] |
NPO13460 |
Asphodeline damascena |
Species |
Asphodelaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO11584 |
Artemisia argentea |
Species |
Asteraceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO16076 |
Penicillium chrysogenum |
Species |
Aspergillaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO2667 |
Acacia lasiopetala |
Species |
Fabaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO9917 |
Plagiomnium cuspidatum |
Species |
Mniaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO27134 |
Euphrasia rubra |
Species |
Orobanchaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO27031 |
Methanosarcina barkeri |
Species |
Methanosarcinaceae |
Archaea |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO8556 |
Eucalyptus kitsoniana |
Species |
Myrtaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO12480 |
Brodiaea californica |
Species |
Asparagaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO13477 |
Cyberlindnera jadinii |
Species |
Phaffomycetaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO15898 |
Streptomyces noursei |
Species |
Streptomycetaceae |
Bacteria |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO14965 |
Lepidophorum repandum |
Species |
Asteraceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO5995 |
Spartium junceum |
Species |
Fabaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO21851 |
Chaetomella raphigera |
Species |
Chaetomellaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO22203 |
Tapinella panuoides |
Species |
Tapinellaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO29322 |
Rhodanthe maryonii |
Species |
Asteraceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO10527 |
Cyathula tomentosa |
Species |
Amaranthaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO26381 |
Bombus pascuorum |
Species |
Apidae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO13225 |
Spergula japonica |
Species |
Caryophyllaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO22101 |
Himantoglossum hircinum |
Species |
Orchidaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO15621 |
Lethasterias fusca |
Species |
Asteriidae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO15513 |
Pseudocyphellaria rubella |
Species |
Lobariaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO255 |
Solanum pseudopersicum |
Species |
Solanaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO15404 |
Streptomyces erythrochromogenes |
Species |
Streptomycetaceae |
Bacteria |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO15806 |
Rhododendron campylocarpum |
Species |
Ericaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO16161 |
Stephania aculeata |
Species |
Menispermaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO26951 |
Gymnopus androsaceus |
Species |
Omphalotaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO3477 |
Plantago asiatica |
Species |
Plantaginaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO15087 |
Alstonia pittieri |
Species |
Apocynaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO13743 |
Populus yunnanensis |
Species |
Salicaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO1777 |
Toddalia aculeata |
Species |
Rutaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO28240 |
0tholaena lemmonii |
Species |
Pteridaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO9299.3 |
Hordeum vulgare var. distichon |
Varieties |
Poaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO13010 |
Allium stipitatum |
Species |
Amaryllidaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO11243 |
Exochorda giraldii |
Species |
Rosaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO15718 |
Lindera sericea |
Species |
Tineidae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO10031 |
Euphorbia antiquorum |
Species |
Euphorbiaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO14327 |
Scabiosa comosa |
Species |
Caprifoliaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO1124 |
Scapania aequiloba |
Species |
Scapaniaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO14614 |
Kopsia longiflora |
Species |
Apocynaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO12777 |
Laurencia pacifica |
Species |
Rhodomelaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO5137 |
Myristica malabarica |
Species |
Myristicaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO14454 |
Plectranthus lanuginosus |
Species |
Lamiaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO15108 |
Angiopteris evecta |
Species |
Marattiaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
☉ UNPD: Universal Natural Products Database [PMID: 23638153].
☉ StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
☉ TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
☉ TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
☉ TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
☉ TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
☉ HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
☉ MetaboLights: a metabolomics database [PMID: 27010336].
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].
  NP Quantity Composition/Concentration
Organism ID |
NP ID |
Organism Material Preparation |
Organism Part |
NP Quantity (Standard) |
NP Quantity (Minimum) |
NP Quantity (Maximum) |
Quantity Unit |
Reference |
☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
☉ DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
☉ PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].
  Biological Activity
Target ID |
Target Type |
Target Name |
Target Organism |
Activity Type |
Activity Relation |
Value |
Unit |
Reference |
☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.
  Chemically structural similarity: I. Similar Active Natural Products in NPASS
Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)
Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient
●  The left chart: Distribution of similarity level between NPC307583 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).
range |
Tanimoto Coefficient |
0-0.1 | 533 |
0.1-0.2 | 2223 |
0.2-0.3 | 5460 |
0.3-0.4 | 11812 |
0.4-0.5 | 5007 |
0.5-0.6 | 4079 |
0.6-0.7 | 5035 |
0.7-0.8 | 4683 |
0.8-0.85 | 2071 |
0.85-0.9 | 1096 |
0.9-0.95 | 610 |
0.95-1 | 88 |
Similarity Score |
Similarity Level |
Natural Product ID |
  Chemically structural similarity: II. Similar Clinical/Approved Drugs
Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.
●  The left chart: Distribution of similarity level between NPC307583 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).
range |
Tanimoto Coefficient |
0-0.1 | 484 |
0.1-0.2 | 1042 |
0.2-0.3 | 1832 |
0.3-0.4 | 2751 |
0.4-0.5 | 1649 |
0.5-0.6 | 940 |
0.6-0.7 | 296 |
0.7-0.8 | 101 |
0.8-0.85 | 44 |
0.85-0.9 | 4 |
0.9-0.95 | 5 |
0.95-1 | 2 |
Similarity Score |
Similarity Level |
Drug ID |
Developmental Stage |