Natural Product: NPC293487

Natural Product IDNPC293487
Common Name
?
The InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
Canthin-6-One
IUPAC Name n.a.
Synonyms NSC-103003
Synthetic Gene Cluster n.a.
ChEMBL Identifier CHEMBL156897
PubChem CID 97176
Chemical Classification
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000279] Alkaloids and derivatives
      • [CHEMONTID:0003805] Indolonaphthyridine alkaloids

The Chemical Classification was calculated by Classyfire, a software for chemical taxonomy calculation. Reference: DOI:10.1186/s13321-016-0174-y.

  Chemical Representations

Standard InCHIKey ZERVJPYNQLONEK-UHFFFAOYSA-N
Standard InCHI InChI=1S/C14H8N2O/c17-13-6-5-11-14-10(7-8-15-11)9-3-1-2-4-12(9)16(13)14/h1-8H
SMILES O=c1ccc2c3n1c1ccccc1c3ccn2

  Calculated Properties

Physi-Chem Properties

Molecular Weight:   220.06 Volume:   226.166
?
Van der Waals volume.
Dense:   0.973 LogP:   2.043
?
The logarithm of the n-octanol/water distribution coefficients.
logD7.4:   2.22
?
The logarithm of the n-octanol/water distribution coefficient at pH=7.4.
LogS:   -2.576
?
The logarithm of aqueous solubility value.
Rotatable Bonds:   0.0 Rigid Bonds:   20.0
TPSA:   34.37
?
Topological Polar Surface Area.
H-Bond Acceptor:   3.0
H-Bond Donor:   0.0 Rings:   4.0
Heavy Atoms:   3.0

MedChem Properties

QED Drug-Likeness Score:   0.456 GASA:   1.0
?
GASA represents the probability of being difficult to synthesize, ranging from 0 to 1.
Synthetic Accessibility Score:   2.213 Fsp3:   0.0
MCE-18:   19.0
?
MCE-18 stands for medicinal chemistry evolution.MCE-18≥45 is considered a suitable value.
Lipinski Rule-of-5:   Rejected
Pfizer Rule:   Rejected GSK Rule:   Rejected
Golden Triangle Rule:   Rejected BMS Rule:   0
Chelating Alert:   0 PAINS Alert:   0
Colloidal aggregators:   0.372 Fluc inhibitor:   0.032
?
The fluc inhibitor value is the probability of being fLuc inhibitors, within the range of 0 to 1.
Blue fluorescence:   0.926
?
The blue fluorescence value is the probability of being blue fluorescence, within the range of 0 to 1
Green fluorescence:   0.312
?
The green fluorescence value is the probability of being green fluorescence, within the range of 0 to 1
Reactive compounds:   0.364 Promiscuous compounds:   0.761

ADMET Properties (ADMETlab3.0)

ADMET: Absorption

Caco-2 Permeability:   -4.276 MDCK Permeability:   -4.43
Pgp-inhibitor:   0.584 Pgp-substrate:   0.113
PAMPA:   0.233
?
The experimental data for Peff was logarithmically transformed (logPeff). Molecules with log Peff values below 2.0 were classified as low-permeability (Category 0), while those with log Peff values exceeding 2.5 were classified as high-permeability (Category 1).
Human Intestinal Absorption (HIA):   0.005
20% Bioavailability (F20%):   0.057 30% Bioavailability (F30%):   0.143
50% Bioavailability (F50%):   0.287

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):   0.384 MRP1:   0.623
Plasma Protein Binding (PPB):   94.752% Volume Distribution (VD):   -0.08
Fu: 6.319%
?
The fraction unbound in plasms.
OATP1B1 inhibitor:   0.764
OATP1B3 inhibitor:   0.948 BCRP inhibitor:   0.488
BSEP inhibitor:   0.996

ADMET: Metabolism

CYP1A2-inhibitor:   0.998 CYP1A2-substrate:   0.636
CYP2C19-inhibitor:   0.63 CYP2C19-substrate:   0.946
CYP2C9-inhibitor:   0.956 CYP2C9-substrate:   0.787
CYP2D6-inhibitor:   0.826 CYP2D6-substrate:   0.652
CYP3A4-inhibitor:   0.711 CYP3A4-substrate:   0.758
CYP2B6-substrate:   0.102 CYP2C8-inhibitor:   0.965
HLM stability:   0.809
?
Human liver microsomal (HLM) stability. Category 0: stable+ (HLM > 30 min); Category 1: unstable- (HLM ≤ 30 min). The output value is the probability of human liver microsomal instability, where a value closer to 1 indicates a higher likelihood of instability.

ADMET: Excretion

Clearance (CL):  7.45 Half-life (T1/2):  1.159

ADMET: Toxicity

hERG Blockers:  0.28 hERG Blockers (10um):  0.509
Human Hepatotoxicity (H-HT):  0.757 Drug-induced Liver Injury (DILI):  0.806
AMES Toxicity:  0.895 Rat Oral Acute Toxicity:  0.565
Maximum Recommended Daily Dose:  0.654 Skin Sensitization:  0.258
Carcinogencity:  0.852 Eye Corrosion:  0.002
Eye Irritation:  0.738 Respiratory Toxicity:  0.87
Drug-induced Neurotoxicity:  0.949 Ototoxicity:  0.495
Hematotoxicity:  0.653 Drug-induced Nephrotoxicity:  0.79
Genotoxicity:  0.941 RPMI-8226 Immunitoxicity:  0.131
A549 Cytotoxicity:  0.196 Hek293 Cytotoxicity:  0.539
BCF:   1.481
?
Bioconcentration factors are used for considering secondary poisoning potential and assessing risks to human health via the food chain. The unit is -log10[(mg/L)/(1000*MW)].
IGC50:   4.17
?
48 hour Tetrahymena pyriformis IGC50. The unit of IGC50 is -log10[(mg/L)/(1000*MW)].
LC50DM:   5.004
?
48 hour Daphnia magna LC50. The unit of LC50DM is -log10[(mg/L)/(1000*MW)].
LC50FM:   4.881
?
96 hour fathead minnow LC50. The unit of LC50FM is -log10[(mg/L)/(1000*MW)].

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO14948 Brucea javanica Species Simaroubaceae Eukaryota n.a. seed n.a. DOI[10.1016/0031-9422(96)00258-0]
NPO25272 Celastrus angulatus Species Celastraceae Eukaryota n.a. seed n.a. DOI[10.1016/S0031-9422(99)00216-2]
NPO14948 Brucea javanica Species Simaroubaceae Eukaryota n.a. fruit n.a. DOI[10.1016/S1383-5769(99)00023-9]
NPO15443 Ailanthus altissima Species Simaroubaceae Eukaryota n.a. xylem n.a. DOI[10.1248/cpb.24.1532]
NPO14948 Brucea javanica Species Simaroubaceae Eukaryota n.a. n.a. n.a. PMID[10086989]
NPO21390 Zanthoxylum integrifoliolum Species Rutaceae Eukaryota fruit Lanyu Island, Taitung County, Taiwan n.a. PMID[10395498]
NPO14602 Vitex negundo Species Lamiaceae Eukaryota leaves n.a. n.a. PMID[12828478]
NPO9965 Eurycoma longifolia Species Simaroubaceae Eukaryota Roots n.a. n.a. PMID[14575431]
NPO14948 Brucea javanica Species Simaroubaceae Eukaryota n.a. n.a. n.a. PMID[1512598]
NPO14948 Brucea javanica Species Simaroubaceae Eukaryota Seeds n.a. n.a. PMID[15165151]
NPO14602 Vitex negundo Species Lamiaceae Eukaryota n.a. root n.a. PMID[15520511]
NPO14602 Vitex negundo Species Lamiaceae Eukaryota seeds n.a. n.a. PMID[15620254]
NPO15520 Dracocephalum kotschyi Species Lamiaceae Eukaryota n.a. leaf n.a. PMID[15949825]
NPO14602 Vitex negundo Species Lamiaceae Eukaryota seeds n.a. n.a. PMID[1624939]
NPO6026 Zanthoxylum chiloperone Species Rutaceae Eukaryota n.a. n.a. n.a. PMID[16309303]
NPO14602 Vitex negundo Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[17027268]
NPO21390 Zanthoxylum integrifoliolum Species Rutaceae Eukaryota n.a. n.a. n.a. PMID[17822293]
NPO14948 Brucea javanica Species Simaroubaceae Eukaryota fruit Indonesia n.a. PMID[17896817]
NPO9965 Eurycoma longifolia Species Simaroubaceae Eukaryota n.a. root n.a. PMID[1800638]
NPO15146 Myrica nana Species Myricaceae Eukaryota n.a. n.a. n.a. PMID[18723353]
NPO14948 Brucea javanica Species Simaroubaceae Eukaryota n.a. Vietnam n.a. PMID[19026551]
NPO15443 Ailanthus altissima Species Simaroubaceae Eukaryota n.a. n.a. n.a. PMID[19299148]
NPO9965 Eurycoma longifolia Species Simaroubaceae Eukaryota n.a. n.a. n.a. PMID[19299148]
NPO9965 Eurycoma longifolia Species Simaroubaceae Eukaryota roots n.a. n.a. PMID[19299148]
NPO24827 Caragana conferta Species Fabaceae Eukaryota n.a. whole plant n.a. PMID[19336940]
NPO8372 Picrasma quassioides Species Simaroubaceae Eukaryota n.a. n.a. n.a. PMID[19586051]
NPO11530 Heterosigma akashiwo Species Chattonellaceae Eukaryota n.a. n.a. n.a. PMID[19659728]
NPO14602 Vitex negundo Species Lamiaceae Eukaryota Seeds n.a. n.a. PMID[19715321]
NPO9965 Eurycoma longifolia Species Simaroubaceae Eukaryota n.a. n.a. n.a. PMID[19919052]
NPO14602 Vitex negundo Species Lamiaceae Eukaryota Seeds n.a. n.a. PMID[19931461]
NPO14948 Brucea javanica Species Simaroubaceae Eukaryota seeds n.a. n.a. PMID[20050684]
NPO8372 Picrasma quassioides Species Simaroubaceae Eukaryota stems n.a. n.a. PMID[20095629]
NPO21014 Brucea antidysenterica Species Simaroubaceae Eukaryota n.a. n.a. n.a. PMID[2089121]
NPO22840 Casearia arguta Species Salicaceae Eukaryota n.a. leaf n.a. PMID[21067210]
NPO22840 Casearia arguta Species Salicaceae Eukaryota n.a. n.a. n.a. PMID[21067210]
NPO15443 Ailanthus altissima Species Simaroubaceae Eukaryota n.a. n.a. n.a. PMID[22224661]
NPO14948 Brucea javanica Species Simaroubaceae Eukaryota Seeds n.a. n.a. PMID[22506620]
NPO15443 Ailanthus altissima Species Simaroubaceae Eukaryota n.a. n.a. n.a. PMID[22799262]
NPO15443 Ailanthus altissima Species Simaroubaceae Eukaryota n.a. n.a. n.a. PMID[23290052]
NPO14602 Vitex negundo Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[23403897]
NPO9965 Eurycoma longifolia Species Simaroubaceae Eukaryota n.a. n.a. n.a. PMID[24467387]
NPO9965 Eurycoma longifolia Species Simaroubaceae Eukaryota roots n.a. n.a. PMID[25066952]
NPO8372 Picrasma quassioides Species Simaroubaceae Eukaryota n.a. n.a. n.a. PMID[25506718]
NPO15443 Ailanthus altissima Species Simaroubaceae Eukaryota stem barks n.a. n.a. PMID[25666824]
NPO9965 Eurycoma longifolia Species Simaroubaceae Eukaryota n.a. n.a. n.a. PMID[25905468]
NPO25272 Celastrus angulatus Species Celastraceae Eukaryota seeds and root bark Henan, China n.a. PMID[26295746]
NPO15520 Dracocephalum kotschyi Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[26522747]
NPO8372 Picrasma quassioides Species Simaroubaceae Eukaryota n.a. n.a. n.a. PMID[27494664]
NPO5401 Monanchora unguiculata Species Crambeidae Eukaryota n.a. n.a. n.a. PMID[28368118]
NPO9644 Euphorbia resinifera Species Euphorbiaceae Eukaryota n.a. n.a. n.a. PMID[29667820]
NPO15520 Dracocephalum kotschyi Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[29873264]
NPO40427 Ailanthus altissima Species Simaroubaceae Eukaryota Roots n.a. n.a. PMID[30106297]
NPO8372 Picrasma quassioides Species Simaroubaceae Eukaryota n.a. n.a. n.a. PMID[30917277]
NPO15520 Dracocephalum kotschyi Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[33172599]
NPO21014 Brucea antidysenterica Species Simaroubaceae Eukaryota n.a. n.a. n.a. PMID[3379416]
NPO21014 Brucea antidysenterica Species Simaroubaceae Eukaryota n.a. n.a. n.a. PMID[3443857]
NPO15520 Dracocephalum kotschyi Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[36253818]
NPO40427 Ailanthus altissima Species Simaroubaceae Eukaryota n.a. n.a. n.a. PMID[36671701]
NPO21014 Brucea antidysenterica Species Simaroubaceae Eukaryota n.a. n.a. n.a. PMID[3760882]
NPO14602 Vitex negundo Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[38163555]
NPO21014 Brucea antidysenterica Species Simaroubaceae Eukaryota n.a. n.a. n.a. PMID[3841557]
NPO40427 Ailanthus altissima Species Simaroubaceae Eukaryota n.a. n.a. n.a. PMID[38672940]
NPO14948 Brucea javanica Species Simaroubaceae Eukaryota n.a. n.a. n.a. PMID[6481366]
NPO40427 Ailanthus altissima Species Simaroubaceae Eukaryota n.a. n.a. n.a. PMID[6619885]
NPO18650 Carassius auratus Species Cyprinidae Eukaryota n.a. n.a. n.a. PMID[6880243]
NPO21014 Brucea antidysenterica Species Simaroubaceae Eukaryota n.a. n.a. n.a. PMID[7288443]
NPO14948 Brucea javanica Species Simaroubaceae Eukaryota n.a. n.a. n.a. PMID[7561896]
NPO21014 Brucea antidysenterica Species Simaroubaceae Eukaryota n.a. n.a. n.a. PMID[8133299]
NPO21014 Brucea antidysenterica Species Simaroubaceae Eukaryota n.a. xylem n.a. PMID[8133299]
NPO211 Aplysina cauliformis Species Aplysinidae Eukaryota n.a. n.a. n.a. PMID[8350091]
NPO21014 Brucea antidysenterica Species Simaroubaceae Eukaryota n.a. n.a. n.a. PMID[8691212]
NPO14948 Brucea javanica Species Simaroubaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO24476 Phellodendron amurense Species Rutaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO22242 Phellodendron chinense Species Rutaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO26538 Phellodendron chinese Species Rutaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO18650 Carassius auratus Species Cyprinidae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO21390 Zanthoxylum integrifoliolum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO8372 Picrasma quassioides Species Simaroubaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO40427 Ailanthus altissima Species Simaroubaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO14602 Vitex negundo Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO12988 Blainvillea latifolia Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO9965 Eurycoma longifolia Species Simaroubaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO3924 Penicillium alutaceum Species Aspergillaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO1641 Amycolatopsis azurea Species Pseudonocardiaceae Bacteria n.a. n.a. n.a. Database[COCONUT]
NPO211 Aplysina cauliformis Species Aplysinidae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO11084 Asplenium normale Species Aspleniaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO10818 Carpobrotus edulis Species Aizoaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO5303 Castanea crenata Species Fagaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO11432 Centrolobium tomentosum Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO9203 Cephalonomia gallicola Species Bethylidae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO14845 Ceratophyllum submersum Species Ceratophyllaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO26718 Chelidonura fulvipunctata Species Aglajidae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO15520 Dracocephalum kotschyi Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO14749 Lippia carviodora Species Verbenaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO15146 Myrica nana Species Myricaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO11873 Oecophylla smaragdina Species Formicidae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO12717 Parmelia metastrigosa Species Parmeliaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO14528 Pneumatospora obcoronata n.a. n.a. n.a. n.a. n.a. n.a. Database[COCONUT]
NPO11637 Psilostrophe cooperi Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO12944 Sideritis tragoriganum Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO14150 Solanum jamaicense Species Solanaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO12089 Trifolium alexandrinum Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO3164 Yponomeuta malinellus Species Yponomeutidae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO6026 Zanthoxylum chiloperone Species Rutaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO25272 Celastrus angulatus Species Celastraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO893 Helichrysum sutherlandii Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO8694 Picrasma crenata Species Simaroubaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO5401 Monanchora unguiculata Species Crambeidae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO13494 Prosopis kuntzei Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO9644 Euphorbia resinifera Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO21885 Furcraea elegans Species Asparagaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO24870 Campanula patula Species Campanulaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO26987 Zanthoxylum dipetalum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO9024 Aralidium pinnatifidum Species Torricelliaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO24994 Thladiantha dubia Species Cucurbitaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO20383 Stenocereus thurberi Species Cactaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO18237 Zanthoxylum elephantiasis Species Rutaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO21012 Mikania sessilifolia Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO8220 Russula sardonia Species Russulaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO20318 Acinetobacter baumannii Species Moraxellaceae Bacteria n.a. n.a. n.a. Database[COCONUT]
NPO11530 Heterosigma akashiwo Species Chattonellaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO13604 Dermocybe cardinalis Species Cortinariaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28978 Zanthoxylum ovalifolium Species Rutaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO8372 Picrasma quassioides Species Simaroubaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO18650 Carassius auratus Species Cyprinidae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO21014 Brucea antidysenterica Species Simaroubaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO14948 Brucea javanica Species Simaroubaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO24476 Phellodendron amurense Species Rutaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO14602 Vitex negundo Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO22242 Phellodendron chinense Species Rutaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO15443 Ailanthus altissima Species Simaroubaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO18237 Zanthoxylum elephantiasis Species Rutaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO9965 Eurycoma longifolia Species Simaroubaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO8694 Picrasma crenata Species Simaroubaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO9644 Euphorbia resinifera Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO26987 Zanthoxylum dipetalum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO15520 Dracocephalum kotschyi Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO8747 Zanthoxylum belizense Species Rutaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO28978 Zanthoxylum ovalifolium Species Rutaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO25272 Celastrus angulatus Species Celastraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO9965 Eurycoma longifolia Species Simaroubaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO8372 Picrasma quassioides Species Simaroubaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO22242 Phellodendron chinense Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO18237 Zanthoxylum elephantiasis Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO14948 Brucea javanica Species Simaroubaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO9644 Euphorbia resinifera Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO24476 Phellodendron amurense Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO21014 Brucea antidysenterica Species Simaroubaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO14602 Vitex negundo Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO18650 Carassius auratus Species Cyprinidae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO12089 Trifolium alexandrinum Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO15443 Ailanthus altissima Species Simaroubaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO26987 Zanthoxylum dipetalum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO25272 Celastrus angulatus Species Celastraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO8694 Picrasma crenata Species Simaroubaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO21390 Zanthoxylum integrifoliolum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28978 Zanthoxylum ovalifolium Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO8747 Zanthoxylum belizense Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO15520 Dracocephalum kotschyi Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO893 Helichrysum sutherlandii Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO8372 Picrasma quassioides Species Simaroubaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO22242 Phellodendron chinense Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO14948 Brucea javanica Species Simaroubaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO25272 Celastrus angulatus Species Celastraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO18650 Carassius auratus Species Cyprinidae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO24476 Phellodendron amurense Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO14602 Vitex negundo Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO30610 Picrasma allanthoides Species Simaroubaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO30095 Allanthus altissima n.a. n.a. n.a. n.a. n.a. n.a. Database[TCM_Taiwan]
NPO26987 Zanthoxylum dipetalum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[Title]
NPO22242 Phellodendron chinense Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO14602 Vitex negundo Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO24476 Phellodendron amurense Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO15443 Ailanthus altissima Species Simaroubaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO26538 Phellodendron chinese Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO14948 Brucea javanica Species Simaroubaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO8372 Picrasma quassioides Species Simaroubaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO9024 Aralidium pinnatifidum Species Torricelliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO211 Aplysina cauliformis Species Aplysinidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13604 Dermocybe cardinalis Species Cortinariaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15146 Myrica nana Species Myricaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1418 Boletinus paluster Species Gyrodontaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14749 Lippia carviodora Species Verbenaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2084 Acinetobacter calcoaceticus Species Moraxellaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO6626 Pteris spinulosa Species Pteridaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11637 Psilostrophe cooperi Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20318 Acinetobacter baumannii Species Moraxellaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO5401 Monanchora unguiculata Species Crambeidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5303 Castanea crenata Species Fagaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14528 Pneumatospora obcoronata n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO11072 Geigeria schinzii Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14845 Ceratophyllum submersum Species Ceratophyllaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14948 Brucea javanica Species Simaroubaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1641 Amycolatopsis azurea Species Pseudonocardiaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO6014 Goniothalamus undulatus Species Annonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14280 Helichrysum angustifolium Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12089 Trifolium alexandrinum Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3576 Bersama swinnyi Species Melianthaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3924 Penicillium alutaceum Species Aspergillaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11530 Heterosigma akashiwo Species Chattonellaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9965 Eurycoma longifolia Species Simaroubaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11873 Oecophylla smaragdina Species Formicidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9644 Euphorbia resinifera Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8820 Lophocereus marginatus Species Cactaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8220 Russula sardonia Species Russulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13692 Leontice kiangnanensis Species Berberidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11432 Centrolobium tomentosum Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14602 Vitex negundo Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12026 Papaver radicatum Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12717 Parmelia metastrigosa Species Parmeliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9203 Cephalonomia gallicola Species Bethylidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2505 Pachycereus pringlei Species Cactaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26718 Chelidonura fulvipunctata Species Aglajidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20383 Stenocereus thurberi Species Cactaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9375 Medium grandiflorum n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO11084 Asplenium normale Species Aspleniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14150 Solanum jamaicense Species Solanaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO893 Helichrysum sutherlandii Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15520 Dracocephalum kotschyi Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13494 Prosopis kuntzei Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12944 Sideritis tragoriganum Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3164 Yponomeuta malinellus Species Yponomeutidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13798 Cheilanthes marantae Species Pteridaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22888 Lophiostoma vaginatispora Species Lophiostomataceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12890 Ophryosporus charua Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8640 Nemuaron humboldtii Species Atherospermataceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12577 Pinus glauca Species Pinaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10818 Carpobrotus edulis Species Aizoaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6026 Zanthoxylum chiloperone Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12988 Blainvillea latifolia Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21014 Brucea antidysenterica Species Simaroubaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28978 Zanthoxylum ovalifolium Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22242 Phellodendron chinense Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24870 Campanula patula Species Campanulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21012 Mikania sessilifolia Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21390 Zanthoxylum integrifoliolum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24827 Caragana conferta Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24994 Thladiantha dubia Species Cucurbitaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18237 Zanthoxylum elephantiasis Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18650 Carassius auratus Species Cyprinidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20992 Tarenna graveolens Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18753 Sideritis serrata Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15443 Ailanthus altissima Species Simaroubaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21354 Juniperus cedrus Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21697 Irpex pachyodon Species Irpicaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19973 Cupania glabra Species Sapindaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23770 Artemisia gmelini Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8694 Picrasma crenata Species Simaroubaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21885 Furcraea elegans Species Asparagaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23813 Ardisia floribunda Species Primulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22840 Casearia arguta Species Salicaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26987 Zanthoxylum dipetalum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25272 Celastrus angulatus Species Celastraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25040 Tellina nitida Species Tellinidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24476 Phellodendron amurense Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8747 Zanthoxylum belizense Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8372 Picrasma quassioides Species Simaroubaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



  NP Quantity Composition/Concentration

Organism ID Organism Name Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



 Biological Activity

Molecular-level activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT178 Individual protein Protein-tyrosine phosphatase 1B Homo sapiens Inhibition = 15.3 % PMID[25819098]
NPT29454 Single protein Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 Homo sapiens Inhibition = -1.123 % PMID[38318365]
NPT805 Protein complex GABA-A receptor; anion channel Rattus norvegicus Ki = 10000.0 nM PMID[6325688]
NPT1567 Protein complex DNA gyrase Escherichia coli K-12 Activity = 7.0 % PMID[17682095]
NPT1567 Protein complex DNA gyrase Escherichia coli K-12 Activity = 13.0 % PMID[17682095]
NPT1567 Protein complex DNA gyrase Escherichia coli K-12 Activity = 12.0 % PMID[17682095]

In vitro activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT83 Cell line MCF7 Homo sapiens ED50 = 7.3 ug ml-1 PMID[14575431]
NPT81 Cell line A549 Homo sapiens ED50 = 3.6 ug ml-1 PMID[14575431]
NPT1161 Cell line CHO Cricetulus griseus Activity = 22.2 % PMID[6195312]
NPT1161 Cell line CHO Cricetulus griseus Activity = 0.0 % PMID[6195312]
NPT165 Cell line HeLa Homo sapiens GI > 90.0 % PMID[25379743]
NPT165 Cell line HeLa Homo sapiens GI = 100.0 % PMID[25379743]
NPT139 Cell line HT-29 Homo sapiens EC50 = 15000.0 nM PMID[25379743]
NPT15 Cell line Jurkat Homo sapiens EC50 = 15000.0 nM PMID[25379743]
NPT165 Cell line HeLa Homo sapiens EC50 = 15000.0 nM PMID[25379743]
NPT76 Cell line C6 Rattus norvegicus EC50 = 15000.0 nM PMID[25379743]
NPT139 Cell line HT-29 Homo sapiens Activity <= 30.0 % PMID[25379743]
NPT15 Cell line Jurkat Homo sapiens Activity <= 30.0 % PMID[25379743]
NPT165 Cell line HeLa Homo sapiens Activity <= 30.0 % PMID[25379743]
NPT76 Cell line C6 Rattus norvegicus Activity <= 30.0 % PMID[25379743]
NPT306 Cell line PC-3 Homo sapiens FC = 2.0 n.a. PMID[25379743]
NPT306 Cell line PC-3 Homo sapiens FC = 7.0 n.a. PMID[25379743]
NPT139 Cell line HT-29 Homo sapiens FC = 2.0 n.a. PMID[25379743]
NPT165 Cell line HeLa Homo sapiens FC = 1.5 n.a. PMID[25379743]
NPT165 Cell line HeLa Homo sapiens FC = 3.5 n.a. PMID[25379743]
NPT306 Cell line PC-3 Homo sapiens Inhibition = 80.0 % PMID[25379743]
NPT306 Cell line PC-3 Homo sapiens Inhibition = 35.0 % PMID[25379743]
NPT306 Cell line PC-3 Homo sapiens Activity = 38.1 % PMID[25379743]
NPT306 Cell line PC-3 Homo sapiens Activity = 13.3 % PMID[25379743]
NPT306 Cell line PC-3 Homo sapiens Activity = 47.8 % PMID[25379743]
NPT3190 Cell line NHDF Homo sapiens Activity = 80.0 % PMID[25379743]
NPT3190 Cell line NHDF Homo sapiens Activity = 64.0 % PMID[25379743]
NPT3190 Cell line NHDF Homo sapiens Activity = 33.0 % PMID[25379743]
NPT3190 Cell line NHDF Homo sapiens EC50 = 115000.0 nM PMID[25379743]
NPT180 Cell line HCT-8 Homo sapiens Activity = 55.55 % PMID[36399766]
NPT2406 Cell line HCC1395 Homo sapiens IC50 = 8.12 ug.mL-1 PMID[34332400]
NPT90 Cell line DU-145 Homo sapiens IC50 = 9.43 ug.mL-1 PMID[34332400]
NPT404 Cell line CCRF-CEM Homo sapiens IC50 = 15820.0 nM PMID[34332400]
NPT65 Cell line HepG2 Homo sapiens CC50 = 85650.0 nM PMID[36399766]
NPT171 Cell line MRC5 Homo sapiens CC50 = 91160.0 nM PMID[36399766]
NPT2311 Cell line Calu-3 Homo sapiens CC50 > 100000.0 nM PMID[36399766]
NPT180 Cell line HCT-8 Homo sapiens CC50 = 42410.0 nM PMID[36399766]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 2.238 ug.mL-1 PMID[14575431]
NPT992 Organism Entamoeba histolytica Entamoeba histolytica IC50 = 23.0 ug.mL-1 DOI[10.1007/s00044-011-9767-1]
NPT331 Organism Ralstonia solanacearum Ralstonia solanacearum MIC = 3.91 ug.mL-1 PMID[26681509]
NPT331 Organism Ralstonia solanacearum Ralstonia solanacearum MIC = 7.81 ug.mL-1 PMID[26681509]
NPT28438 Unchecked Unchecked n.a. Activity < 20.0 % PMID[36399766]
NPT28536 Cell line Keratinocyte n.a. IC50 = 1.11 ug.mL-1 PMID[34332400]
NPT29703 Organism Mycolicibacterium phlei Mycolicibacterium phlei MIC = 8.0 ug.mL-1 PMID[30125723]
NPT330 Organism Trichophyton mentagrophytes Trichophyton mentagrophytes MIC = 7100.0 nM PMID[16309303]
NPT312 Organism Saccharomyces cerevisiae Saccharomyces cerevisiae MIC = 14200.0 nM PMID[16309303]
NPT20 Organism Candida albicans Candida albicans MIC = 56800.0 nM PMID[16309303]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. IC50 = 1.11 ug.mL-1 PMID[6619885]
NPT79 Organism Bacillus subtilis Bacillus subtilis IZ = 8.6 mm PMID[6195312]
NPT79 Organism Bacillus subtilis Bacillus subtilis IZ = 16.0 mm PMID[6195312]
NPT20 Organism Candida albicans Candida albicans IZ = 13.0 mm PMID[6195312]
NPT20 Organism Candida albicans Candida albicans IZ = 9.0 mm PMID[6195312]
NPT312 Organism Saccharomyces cerevisiae Saccharomyces cerevisiae IZ = 13.0 mm PMID[6195312]
NPT312 Organism Saccharomyces cerevisiae Saccharomyces cerevisiae IZ = 9.0 mm PMID[6195312]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. Activity = 85.3 % PMID[10395498]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. Activity = 4.2 % PMID[10395498]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. Activity = 7.9 % PMID[10395498]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. Activity = 36.4 % PMID[10395498]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. Activity = 57.3 % PMID[10395498]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. Activity = 40.0 % DOI[10.1039/C2MD20047C]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. Activity = 35.0 % DOI[10.1039/C2MD20047C]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. EC50 = 15000.0 nM PMID[25379743]
NPT20529 Non-molecular NON-PROTEIN TARGET n.a. Activity <= 30.0 % PMID[25379743]
NPT28671 Cell line ADR5000 cell line Homo sapiens IC50 = 10520.0 nM PMID[34332400]
NPT85 Organism Filobasidiella neoformans Cryptococcus neoformans MIC = 14200.0 nM PMID[16309303]
NPT87 Organism Aspergillus fumigatus Aspergillus fumigatus MIC = 14200.0 nM PMID[16309303]
NPT19 Organism Escherichia coli Escherichia coli IZ = 7.0 mm PMID[6195312]
NPT19 Organism Escherichia coli Escherichia coli IZ = 0.0 mm PMID[6195312]
NPT18 Organism Pseudomonas aeruginosa Pseudomonas aeruginosa IZ = 0.0 mm PMID[6195312]
NPT175 Organism Enterococcus faecalis Enterococcus faecalis IZ = 0.0 mm PMID[6195312]
NPT16 Organism Staphylococcus aureus Staphylococcus aureus IZ = 10.0 mm PMID[6195312]
NPT16 Organism Staphylococcus aureus Staphylococcus aureus IZ = 0.0 mm PMID[6195312]
NPT16 Organism Staphylococcus aureus Staphylococcus aureus MIC = 31.25 ug.mL-1 PMID[26681509]
NPT4073 Organism Mycobacterium Mycobacterium MIC = 2.0 ug.mL-1 PMID[28412530]
NPT16 Organism Staphylococcus aureus Staphylococcus aureus MIC = 8.0 ug.mL-1 PMID[28412530]
NPT28513 Organism Mycolicibacterium smegmatis Mycolicibacterium smegmatis MIC = 8.0 ug.mL-1 PMID[30125723]
NPT16 Organism Staphylococcus aureus Staphylococcus aureus MIC = 8.0 ug.mL-1 PMID[30125723]
NPT28561 Organism Mycolicibacterium fortuitum Mycolicibacterium fortuitum MIC = 16.0 ug.mL-1 PMID[30125723]
NPT16 Organism Staphylococcus aureus Staphylococcus aureus MIC = 32.0 ug.mL-1 PMID[30125723]
NPT30043 Cell line Vero Chlorocebus sabaeus CC50 > 100000.0 nM PMID[36399766]
NPT1209 Organism Pseudomonas fluorescens Pseudomonas fluorescens IZ = 0.0 mm PMID[6195312]
NPT2 Others Unspecified n.a. IC50 = 50000.0 nM PMID[17682095]
NPT314 Organism Bacillus cereus Bacillus cereus MIC = 7.81 ug.mL-1 PMID[26681509]

In vivo activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference





 Experimental ADME

Experiment Model Experiment Tissue ADME Type ADME Relation ADME Value ADME Unit Reference





 Experimental Toxicity

Quantitative toxicity

Experiment Model Experiment Organism Toxicity Type Toxicity Relation Toxicity Value Toxicity Unit Reference

Common Abbreviations:
LC: Lethal Concentration; LD: Lethal Dose; LT:Lethal Time; NOAEL: No-observed-adverse-effect Level; BMDL: Benchmark Dose Lower Confidence Limit; BMD: Benchmark Dose; BMC:Benchmark Concentration; LOAEL: Lowest Observed Adverse Effect Level; RfD:Reference Dose; RfC:Reference Concentration; MRL: Minimal Risk Level; MEG: Maximum Exposure Guideline; PAC: Protective Action Criteria

Categorical toxicity labels

Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption
Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP toxicity records from domain-specific databases. These databases include:
ToxValDB: a curated database that compiles quantitative toxicity values for chemicals from diverse public sources to support toxicological research and risk assessment.
TOXRIC: a comprehensive, free-to-access, online database providing toxicological/feature data. The toxicity labels are retrieved from this database. [PMID: 36400569]


  Chemically structural similarity

Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes approximately 50,000 NPs with experimentally-derived bioactivity available in NPASS)

Similarity is measured using the Tanimoto coefficient (Tc) , which compares the binary fingerprints of two molecules. Tc is calculated as the intersection divided by the union of '1' bits in the fingerprints, ranging from 0 to 1, with 1 indicating highest similarity.

●  The left chart: Distribution of similarity level between NPC293487 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.5 or Top200).

Similarity Score Similarity Level Natural Product ID
0.6939 Remote Similarity NPC53144
0.68 Remote Similarity NPC478185
0.6735 Remote Similarity NPC211813
0.6735 Remote Similarity NPC600122
0.66 Remote Similarity NPC200836
0.6538 Remote Similarity NPC174758
0.6471 Remote Similarity NPC82548
0.6471 Remote Similarity NPC174672
0.6275 Remote Similarity NPC478184
0.6154 Remote Similarity NPC12649
0.6122 Remote Similarity NPC478186
0.6038 Remote Similarity NPC24864
0.6038 Remote Similarity NPC198673
0.6038 Remote Similarity NPC482441
0.6038 Remote Similarity NPC91895
0.5962 Remote Similarity NPC287208
0.5556 Remote Similarity NPC168911
0.5357 Remote Similarity NPC239954
0.5263 Remote Similarity NPC212213
0.5192 Remote Similarity NPC238499

Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC293487 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.5 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
NPD

Bioactivity similarity

  Bioactivity similarity

Similar Natural Products in NPASS

Similarity level is defined by Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.
Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data