Natural Product: NPC241877
Natural Product ID:   | NPC241877 |
Common Name*:   | VBJZKTOFAFJBGM-MPQISDEYSA-N |
IUPAC Name:   | n.a. |
Synonyms:   | |
Standard InCHIKey:   | VBJZKTOFAFJBGM-MPQISDEYSA-N |
Standard InCHI:   | InChI=1S/C30H48O/c1-19(2)20-11-15-27(5)17-18-28(6)21(25(20)27)9-10-23-29(28,7)16-12-22-26(3,4)14-13-24(31)30(22,23)8/h13-14,19-23,25H,9-12,15-18H2,1-8H3/t20-,21-,22-,23-,25-,27+,28+,29+,30-/m0/s1 |
SMILES:   | CC(C)[C@@H]1CC[C@]2(C)CC[C@]3(C)[C@@H](CC[C@H]4[C@@]3(C)CC[C@H]3C(C)(C)C=CC(=O)[C@]43C)[C@H]12
|
Synthetic Gene Cluster:   |
n.a. |
ChEMBL Identifier:   |
n.a. |
PubChem CID:   |
n.a. |
Chemical Classification**:   |
-
CHEMONTID:0000000 [Organic compounds]
-
[CHEMONTID:0000012] Lipids and lipid-like molecules
-
[CHEMONTID:0000259] Prenol lipids
[CHEMONTID:0001553] Triterpenoids
|
*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.
  Species Source
Organism ID |
Organism Name |
Taxonomy Level |
Family |
SuperKingdom |
Isolation Part |
Collection Location |
Collection Time |
Reference |
NPO25269 |
Ganoderma lucidum |
Species |
Ganodermataceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
DOI[10.1016/j.phytochem.2005.10.025] |
NPO25269 |
Ganoderma lucidum |
Species |
Ganodermataceae |
Eukaryota |
n.a. |
fruit body |
n.a. |
PMID[11520245] |
NPO25269 |
Ganoderma lucidum |
Species |
Ganodermataceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
PMID[12045343] |
NPO25119 |
Euonymus laxiflorus |
Species |
Celastraceae |
Eukaryota |
n.a. |
stem |
n.a. |
PMID[12713415] |
NPO25119 |
Euonymus laxiflorus |
Species |
Celastraceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
PMID[12713415] |
NPO25119 |
Euonymus laxiflorus |
Species |
Celastraceae |
Eukaryota |
n.a. |
leaf |
n.a. |
PMID[12713415] |
NPO19263 |
Bulbinella floribunda |
Species |
Asphodelaceae |
Eukaryota |
roots |
n.a. |
n.a. |
PMID[12828488] |
NPO25269 |
Ganoderma lucidum |
Species |
Ganodermataceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
PMID[14695801] |
NPO25344 |
Caryocar villosum |
Species |
Caryocaraceae |
Eukaryota |
Fruits |
n.a. |
n.a. |
PMID[16792411] |
NPO25269 |
Ganoderma lucidum |
Species |
Ganodermataceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
PMID[1791484] |
NPO25206 |
Cucurbita moschata |
Species |
Cucurbitaceae |
Eukaryota |
n.a. |
Northeastern Regional Plant Introduction Station at Geneva |
1966, 1967, and 1968 crop seasons |
PMID[18460139] |
NPO25269 |
Ganoderma lucidum |
Species |
Ganodermataceae |
Eukaryota |
n.a. |
spore |
n.a. |
PMID[18827358] |
NPO25269 |
Ganoderma lucidum |
Species |
Ganodermataceae |
Eukaryota |
fruiting bodies |
Nagano, Japan |
2008-MAY |
PMID[20039640] |
NPO25269 |
Ganoderma lucidum |
Species |
Ganodermataceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
PMID[20384295] |
NPO23525 |
Physalis sordida |
Species |
Solanaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
PMID[20575572] |
NPO25269 |
Ganoderma lucidum |
Species |
Ganodermataceae |
Eukaryota |
fruiting bodies |
n.a. |
n.a. |
PMID[20702092] |
NPO25269 |
Ganoderma lucidum |
Species |
Ganodermataceae |
Eukaryota |
fruiting bodies |
n.a. |
n.a. |
PMID[21924611] |
NPO25269 |
Ganoderma lucidum |
Species |
Ganodermataceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
PMID[22014750] |
NPO25269 |
Ganoderma lucidum |
Species |
Ganodermataceae |
Eukaryota |
n.a. |
fruit body |
n.a. |
PMID[22044278] |
NPO25269 |
Ganoderma lucidum |
Species |
Ganodermataceae |
Eukaryota |
fruiting body |
n.a. |
n.a. |
PMID[22047696] |
NPO25727 |
Tabernaemontana divaricata |
Species |
Apocynaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
PMID[23944995] |
NPO25269 |
Ganoderma lucidum |
Species |
Ganodermataceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
PMID[26222905] |
NPO25727 |
Tabernaemontana divaricata |
Species |
Apocynaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
PMID[26231157] |
NPO25206 |
Cucurbita moschata |
Species |
Cucurbitaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
PMID[26477735] |
NPO25377 |
Ocimum gratissimum |
Species |
Lamiaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
PMID[29192771] |
NPO25727 |
Tabernaemontana divaricata |
Species |
Apocynaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
PMID[30169038] |
NPO25206 |
Cucurbita moschata |
Species |
Cucurbitaceae |
Eukaryota |
n.a. |
The ‘Dolina Mogilnicy’ Organic Farming Products Cooperative (Wolkowo, Poland) |
2016-Oct |
PMID[31416184] |
NPO25377 |
Ocimum gratissimum |
Species |
Lamiaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
PMID[6114991] |
NPO25206 |
Cucurbita moschata |
Species |
Cucurbitaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
PMID[6821187] |
NPO25269 |
Ganoderma lucidum |
Species |
Ganodermataceae |
Eukaryota |
n.a. |
fruit body |
n.a. |
PMID[9635497] |
NPO25206 |
Cucurbita moschata |
Species |
Cucurbitaceae |
Eukaryota |
|
n.a. |
n.a. |
Database[FooDB] |
NPO24574 |
Berberis orthobotrys |
Species |
Berberidaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[HerDing] |
NPO25206 |
Cucurbita moschata |
Species |
Cucurbitaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[HerDing] |
NPO16242 |
Phlojodicarpus sibiricus |
Species |
Apiaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[HerDing] |
NPO25269 |
Ganoderma lucidum |
Species |
Ganodermataceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[HerDing] |
NPO25428 |
Ceriops decandra |
Species |
Rhizophoraceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCMID] |
NPO25377 |
Ocimum gratissimum |
Species |
Lamiaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCMID] |
NPO25269 |
Ganoderma lucidum |
Species |
Ganodermataceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCMID] |
NPO14387 |
Dalbergia ecastaphyllum |
Species |
Fabaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCMID] |
NPO16242 |
Phlojodicarpus sibiricus |
Species |
Apiaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCMID] |
NPO25206 |
Cucurbita moschata |
Species |
Cucurbitaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCMID] |
NPO25727 |
Tabernaemontana divaricata |
Species |
Apocynaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCMID] |
NPO24574 |
Berberis orthobotrys |
Species |
Berberidaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCMID] |
NPO25608 |
Zanthoxylum acutifolium |
Species |
Rutaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCMID] |
NPO2749 |
Baccharis dracunculifolia |
Species |
Asteraceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCMID] |
NPO25206 |
Cucurbita moschata |
Species |
Cucurbitaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCM_Taiwan] |
NPO16242 |
Phlojodicarpus sibiricus |
Species |
Apiaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCM_Taiwan] |
NPO25269 |
Ganoderma lucidum |
Species |
Ganodermataceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCM_Taiwan] |
NPO25269 |
Ganoderma lucidum |
Species |
Ganodermataceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TM-MC] |
NPO25632 |
Sarcophyton buitendijki |
Species |
Alcyoniidae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO14387 |
Dalbergia ecastaphyllum |
Species |
Fabaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO24483 |
Acrisione denticulata |
Species |
Asteraceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO25269 |
Ganoderma lucidum |
Species |
Ganodermataceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO21570 |
Blumea eriantha |
Species |
Asteraceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO23456 |
Palaquium canaliculatum |
Species |
Sapotaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO25064 |
Streptomyces purpurogeneiscleroticus |
Species |
Streptomycetaceae |
Bacteria |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO24442 |
Calycotome villosa |
n.a. |
n.a. |
n.a. |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO25377 |
Ocimum gratissimum |
Species |
Lamiaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO23525 |
Physalis sordida |
Species |
Solanaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO23583 |
Taonia australasica |
Species |
Dictyotaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO25063 |
Ongokea gore |
Species |
Aptandraceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO20636 |
Myoporum platycarpum |
Species |
Scrophulariaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO25453 |
Solidago petiolaris |
Species |
Asteraceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO25517 |
Colladonia triquetra |
n.a. |
n.a. |
n.a. |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO24574 |
Berberis orthobotrys |
Species |
Berberidaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO24251 |
Taxus drupacea |
Species |
Taxaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO25727 |
Tabernaemontana divaricata |
Species |
Apocynaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO22056 |
Streptomyces roseoverticillatus |
Species |
Streptomycetaceae |
Bacteria |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO25119 |
Euonymus laxiflorus |
Species |
Celastraceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO25428 |
Ceriops decandra |
Species |
Rhizophoraceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO24666 |
Codium dwarkense |
Species |
Codiaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO25687 |
Archidendron ellipticum |
Species |
Fabaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO24710 |
Achillea biebersteinii |
Species |
Asteraceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO25244 |
Scopolia atropoides |
Species |
Solanaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO24149 |
Paracoccus denitrificans |
Species |
Rhodobacteraceae |
Bacteria |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO22536 |
Cladosporium cucumerinum |
Species |
Cladosporiaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO11134 |
Himalaiella deltoidea |
Species |
Asteraceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO25206 |
Cucurbita moschata |
Species |
Cucurbitaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO25578 |
Chiton tuberculatus |
Species |
Chitonidae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO23336 |
Cladonia impexa |
Species |
Cladoniaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO23725 |
Dytiscus marginalis |
Species |
Dytiscidae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO23219 |
Lactarius sanguifluus |
Species |
Russulaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO22012 |
Cipadessa fruticosa |
Species |
Meliaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO25608 |
Zanthoxylum acutifolium |
Species |
Rutaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO2749 |
Baccharis dracunculifolia |
Species |
Asteraceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO24534 |
Senecio heliopsis |
Species |
Asteraceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO25486 |
Zaluzania grayana |
Species |
Asteraceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO25157 |
Cymbastela coralliophila |
Species |
Axinellidae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO25067 |
Sanicula epipactis |
Species |
Apiaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO25656 |
Rhizoctonia repens |
Species |
Ceratobasidiaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO22863 |
Littorina littorea |
Species |
Littorinidae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO24860 |
Euphorbia formosana |
Species |
Euphorbiaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO17104 |
Pithecellobium racemosum |
Species |
Fabaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO24903 |
Diplazium esculentum |
Species |
Athyriaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO25401 |
Glochidion philippicum |
Species |
Phyllanthaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO24325 |
Ilex brevicuspis |
Species |
Aquifoliaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO16242 |
Phlojodicarpus sibiricus |
Species |
Apiaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO19263 |
Bulbinella floribunda |
Species |
Asphodelaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO25344 |
Caryocar villosum |
Species |
Caryocaraceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
☉ UNPD: Universal Natural Products Database [PMID: 23638153].
☉ StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
☉ TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
☉ TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
☉ TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
☉ TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
☉ HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
☉ MetaboLights: a metabolomics database [PMID: 27010336].
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].
  NP Quantity Composition/Concentration
Organism ID |
NP ID |
Organism Material Preparation |
Organism Part |
NP Quantity (Standard) |
NP Quantity (Minimum) |
NP Quantity (Maximum) |
Quantity Unit |
Reference |
☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
☉ DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
☉ PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].
  Biological Activity
Target ID |
Target Type |
Target Name |
Target Organism |
Activity Type |
Activity Relation |
Value |
Unit |
Reference |
☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.
  Chemically structural similarity: I. Similar Active Natural Products in NPASS
Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)
Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient
●  The left chart: Distribution of similarity level between NPC241877 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).
range |
Tanimoto Coefficient |
0-0.1 | 216 |
0.1-0.2 | 2475 |
0.2-0.3 | 14029 |
0.3-0.4 | 11657 |
0.4-0.5 | 7181 |
0.5-0.6 | 5096 |
0.6-0.7 | 1768 |
0.7-0.8 | 225 |
0.8-0.85 | 19 |
0.85-0.9 | 25 |
0.9-0.95 | 5 |
0.95-1 | 1 |
Similarity Score |
Similarity Level |
Natural Product ID |
  Chemically structural similarity: II. Similar Clinical/Approved Drugs
Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.
●  The left chart: Distribution of similarity level between NPC241877 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).
range |
Tanimoto Coefficient |
0-0.1 | 210 |
0.1-0.2 | 2472 |
0.2-0.3 | 4533 |
0.3-0.4 | 1350 |
0.4-0.5 | 264 |
0.5-0.6 | 123 |
0.6-0.7 | 147 |
0.7-0.8 | 44 |
0.8-0.85 | 3 |
0.85-0.9 | 4 |
0.9-0.95 | 0 |
0.95-1 | 0 |
Similarity Score |
Similarity Level |
Drug ID |
Developmental Stage |