Natural Product: NPC216394
Natural Product ID:   | NPC216394 |
Common Name*:   | LVGKNOAMLMIIKO-VAWYXSNFSA-N |
IUPAC Name:   | n.a. |
Synonyms:   | |
Standard InCHIKey:   | LVGKNOAMLMIIKO-VAWYXSNFSA-N |
Standard InCHI:   | InChI=1S/C20H38O2/c1-3-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20(21)22-4-2/h11-12H,3-10,13-19H2,1-2H3/b12-11+ |
SMILES:   | CCCCCCCC/C=C/CCCCCCCC(=O)OCC
|
Synthetic Gene Cluster:   |
n.a. |
ChEMBL Identifier:   |
n.a. |
PubChem CID:   |
5364430 |
Chemical Classification**:   |
-
CHEMONTID:0000000 [Organic compounds]
-
[CHEMONTID:0000012] Lipids and lipid-like molecules
-
[CHEMONTID:0003909] Fatty Acyls
[CHEMONTID:0000324] Fatty acid esters
|
*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.
  Species Source
Organism ID |
Organism Name |
Taxonomy Level |
Family |
SuperKingdom |
Isolation Part |
Collection Location |
Collection Time |
Reference |
NPO28276 |
Artemisia argyi |
Species |
Asteraceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
DOI[10.1016/j.jep.2005.01.054] |
NPO26650 |
Terminalia chebula |
Species |
Combretaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
PMID[11520216] |
NPO18932 |
Melia azedarach |
Species |
Meliaceae |
Eukaryota |
n.a. |
Brazilian |
n.a. |
PMID[15387656] |
NPO18932 |
Melia azedarach |
Species |
Meliaceae |
Eukaryota |
n.a. |
ripe fruit |
n.a. |
PMID[16205005] |
NPO27260 |
Polygala tenuifolia |
Species |
Polygalaceae |
Eukaryota |
roots |
n.a. |
n.a. |
PMID[16989524] |
NPO25094 |
Artemisia princeps |
Species |
Asteraceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
PMID[17996677] |
NPO5241 |
Myristica fragrans |
Species |
Myristicaceae |
Eukaryota |
seeds |
n.a. |
n.a. |
PMID[17998162] |
NPO5241 |
Myristica fragrans |
Species |
Myristicaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
PMID[1955885] |
NPO5241 |
Myristica fragrans |
Species |
Myristicaceae |
Eukaryota |
n.a. |
fruit |
n.a. |
PMID[20879744] |
NPO27260 |
Polygala tenuifolia |
Species |
Polygalaceae |
Eukaryota |
n.a. |
rhizome |
n.a. |
PMID[22863942] |
NPO27260 |
Polygala tenuifolia |
Species |
Polygalaceae |
Eukaryota |
aerial parts |
n.a. |
n.a. |
PMID[24042007] |
NPO4640 |
Portulaca oleracea |
Species |
Portulacaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
PMID[26562741] |
NPO5241 |
Myristica fragrans |
Species |
Myristicaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
PMID[27419473] |
NPO12796 |
Periploca sepium |
Species |
Apocynaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
PMID[28294615] |
NPO4640 |
Portulaca oleracea |
Species |
Portulacaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
PMID[29517238] |
NPO28276 |
Artemisia argyi |
Species |
Asteraceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
PMID[31181920] |
NPO28276 |
Artemisia argyi |
Species |
Asteraceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
PMID[31418264] |
NPO4640 |
Portulaca oleracea |
Species |
Portulacaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
PMID[31625751] |
NPO18932 |
Melia azedarach |
Species |
Meliaceae |
Eukaryota |
Fruits |
n.a. |
n.a. |
PMID[33253570] |
NPO4640 |
Portulaca oleracea |
Species |
Portulacaceae |
Eukaryota |
n.a. |
Along the Valencian coast, Spain |
2020-Jun&Jul |
PMID[35161358] |
NPO18932 |
Melia azedarach |
Species |
Meliaceae |
Eukaryota |
Seeds |
n.a. |
n.a. |
PMID[3701342] |
NPO5241 |
Myristica fragrans |
Species |
Myristicaceae |
Eukaryota |
Seed |
n.a. |
n.a. |
Database[FooDB] |
NPO4640 |
Portulaca oleracea |
Species |
Portulacaceae |
Eukaryota |
Seed |
n.a. |
n.a. |
Database[FooDB] |
NPO4640 |
Portulaca oleracea |
Species |
Portulacaceae |
Eukaryota |
|
n.a. |
n.a. |
Database[FooDB] |
NPO5241 |
Myristica fragrans |
Species |
Myristicaceae |
Eukaryota |
n.a. |
n.a. |
|
Database[FooDB] |
NPO5241 |
Myristica fragrans |
Species |
Myristicaceae |
Eukaryota |
|
n.a. |
n.a. |
Database[FooDB] |
NPO5241 |
Myristica fragrans |
Species |
Myristicaceae |
Eukaryota |
Aril |
n.a. |
n.a. |
Database[FooDB] |
NPO5241 |
Myristica fragrans |
Species |
Myristicaceae |
Eukaryota |
Bark |
n.a. |
n.a. |
Database[FooDB] |
NPO4640 |
Portulaca oleracea |
Species |
Portulacaceae |
Eukaryota |
Herb |
n.a. |
n.a. |
Database[FooDB] |
NPO5241 |
Myristica fragrans |
Species |
Myristicaceae |
Eukaryota |
Leaf |
n.a. |
n.a. |
Database[FooDB] |
NPO5241 |
Myristica fragrans |
Species |
Myristicaceae |
Eukaryota |
Leaf Essent. Oil |
n.a. |
n.a. |
Database[FooDB] |
NPO4640 |
Portulaca oleracea |
Species |
Portulacaceae |
Eukaryota |
Plant |
n.a. |
n.a. |
Database[FooDB] |
NPO28276 |
Artemisia argyi |
Species |
Asteraceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[HerDing] |
NPO27018 |
Cynomorium songaricum |
Species |
Cynomoriaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[HerDing] |
NPO21485 |
Polygala sibirica |
Species |
Polygalaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[HerDing] |
NPO26650 |
Terminalia chebula |
Species |
Combretaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[HerDing] |
NPO4640 |
Portulaca oleracea |
Species |
Portulacaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[HerDing] |
NPO5241 |
Myristica fragrans |
Species |
Myristicaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[HerDing] |
NPO27260 |
Polygala tenuifolia |
Species |
Polygalaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[HerDing] |
NPO12796 |
Periploca sepium |
Species |
Apocynaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[HerDing] |
NPO19048 |
Pinellia ternata |
Species |
Araceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[HerDing] |
NPO18932 |
Melia azedarach |
Species |
Meliaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[HerDing] |
NPO25094 |
Artemisia princeps |
Species |
Asteraceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[HerDing] |
NPO5241 |
Myristica fragrans |
Species |
Myristicaceae |
Eukaryota |
n.a. |
n.a. |
|
Database[Phenol-Explorer] |
NPO19048 |
Pinellia ternata |
Species |
Araceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCMID] |
NPO27018 |
Cynomorium songaricum |
Species |
Cynomoriaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCMID] |
NPO12796 |
Periploca sepium |
Species |
Apocynaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCMID] |
NPO21485 |
Polygala sibirica |
Species |
Polygalaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCMID] |
NPO25094 |
Artemisia princeps |
Species |
Asteraceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCMID] |
NPO4640 |
Portulaca oleracea |
Species |
Portulacaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCMID] |
NPO18932 |
Melia azedarach |
Species |
Meliaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCMID] |
NPO18932.1 |
Melia azedarach var. toosendan |
Varieties |
Meliaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCMID] |
NPO26650 |
Terminalia chebula |
Species |
Combretaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCMID] |
NPO28276 |
Artemisia argyi |
Species |
Asteraceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCMID] |
NPO5241 |
Myristica fragrans |
Species |
Myristicaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCMID] |
NPO27260 |
Polygala tenuifolia |
Species |
Polygalaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCMID] |
NPO18932 |
Melia azedarach |
Species |
Meliaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCM_Taiwan] |
NPO28276 |
Artemisia argyi |
Species |
Asteraceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCM_Taiwan] |
NPO12796 |
Periploca sepium |
Species |
Apocynaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCM_Taiwan] |
NPO5241 |
Myristica fragrans |
Species |
Myristicaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCM_Taiwan] |
NPO27260 |
Polygala tenuifolia |
Species |
Polygalaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCM_Taiwan] |
NPO4640 |
Portulaca oleracea |
Species |
Portulacaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCM_Taiwan] |
NPO27018 |
Cynomorium songaricum |
Species |
Cynomoriaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCM_Taiwan] |
NPO26650 |
Terminalia chebula |
Species |
Combretaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCM_Taiwan] |
NPO19048 |
Pinellia ternata |
Species |
Araceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCM_Taiwan] |
NPO21485 |
Polygala sibirica |
Species |
Polygalaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCM_Taiwan] |
NPO5241 |
Myristica fragrans |
Species |
Myristicaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[Title] |
NPO28276 |
Artemisia argyi |
Species |
Asteraceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TM-MC] |
NPO18932 |
Melia azedarach |
Species |
Meliaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TM-MC] |
NPO4640 |
Portulaca oleracea |
Species |
Portulacaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TM-MC] |
NPO5241 |
Myristica fragrans |
Species |
Myristicaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TM-MC] |
NPO10492 |
Artemisia montana |
Species |
Asteraceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TM-MC] |
NPO27018 |
Cynomorium songaricum |
Species |
Cynomoriaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TM-MC] |
NPO25094 |
Artemisia princeps |
Species |
Asteraceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TM-MC] |
NPO27260 |
Polygala tenuifolia |
Species |
Polygalaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TM-MC] |
NPO19048 |
Pinellia ternata |
Species |
Araceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TM-MC] |
NPO21485 |
Polygala sibirica |
Species |
Polygalaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TM-MC] |
NPO12796 |
Periploca sepium |
Species |
Apocynaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TM-MC] |
NPO26650 |
Terminalia chebula |
Species |
Combretaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TM-MC] |
NPO18932.1 |
Melia azedarach var. toosendan |
Varieties |
Meliaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TM-MC] |
NPO19048 |
Pinellia ternata |
Species |
Araceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO27260 |
Polygala tenuifolia |
Species |
Polygalaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO28276 |
Artemisia argyi |
Species |
Asteraceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO25094 |
Artemisia princeps |
Species |
Asteraceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO18932.1 |
Melia azedarach var. toosendan |
Varieties |
Meliaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO12796 |
Periploca sepium |
Species |
Apocynaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO5241 |
Myristica fragrans |
Species |
Myristicaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO18932 |
Melia azedarach |
Species |
Meliaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO21485 |
Polygala sibirica |
Species |
Polygalaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO26650 |
Terminalia chebula |
Species |
Combretaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO10492 |
Artemisia montana |
Species |
Asteraceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
☉ UNPD: Universal Natural Products Database [PMID: 23638153].
☉ StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
☉ TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
☉ TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
☉ TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
☉ TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
☉ HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
☉ MetaboLights: a metabolomics database [PMID: 27010336].
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].
  NP Quantity Composition/Concentration
Organism ID |
NP ID |
Organism Material Preparation |
Organism Part |
NP Quantity (Standard) |
NP Quantity (Minimum) |
NP Quantity (Maximum) |
Quantity Unit |
Reference |
NPO42044 |
NPC216394 |
n.a. |
Seeds |
25 |
n.a. |
n.a. |
mg/g of DW |
PMID[35056798] |
☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
☉ DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
☉ PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].
  Biological Activity
Target ID |
Target Type |
Target Name |
Target Organism |
Activity Type |
Activity Relation |
Value |
Unit |
Reference |
☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.
  Chemically structural similarity: I. Similar Active Natural Products in NPASS
Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)
Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient
●  The left chart: Distribution of similarity level between NPC216394 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).
range |
Tanimoto Coefficient |
0-0.1 | 158 |
0.1-0.2 | 2944 |
0.2-0.3 | 15916 |
0.3-0.4 | 12802 |
0.4-0.5 | 7238 |
0.5-0.6 | 2817 |
0.6-0.7 | 626 |
0.7-0.8 | 134 |
0.8-0.85 | 25 |
0.85-0.9 | 25 |
0.9-0.95 | 3 |
0.95-1 | 9 |
Similarity Score |
Similarity Level |
Natural Product ID |
  Chemically structural similarity: II. Similar Clinical/Approved Drugs
Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.
●  The left chart: Distribution of similarity level between NPC216394 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).
range |
Tanimoto Coefficient |
0-0.1 | 137 |
0.1-0.2 | 3332 |
0.2-0.3 | 3841 |
0.3-0.4 | 1305 |
0.4-0.5 | 392 |
0.5-0.6 | 101 |
0.6-0.7 | 23 |
0.7-0.8 | 10 |
0.8-0.85 | 2 |
0.85-0.9 | 7 |
0.9-0.95 | 0 |
0.95-1 | 0 |
Similarity Score |
Similarity Level |
Drug ID |
Developmental Stage |