Natural Product: NPC185556
Natural Product ID:   | NPC185556 |
Common Name*:   | FTAJAXWRGBRFCV-YORKTUFCSA-N |
IUPAC Name:   | n.a. |
Synonyms:   | |
Standard InCHIKey:   | FTAJAXWRGBRFCV-YORKTUFCSA-N |
Standard InCHI:   | InChI=1S/C20H30O5/c1-12-14(22)10-16-19(2,3)6-5-7-20(16,4)18(12)15-8-13(11-21)9-17(23)25-24-15/h8,11,14-18,22-23H,1,5-7,9-10H2,2-4H3/t14-,15-,16-,17+,18+,20-/m0/s1 |
SMILES:   | C=C1[C@H](C[C@H]2C(C)(C)CCC[C@]2(C)[C@H]1[C@@H]1C=C(C[C@H](O)OO1)C=O)O
|
Synthetic Gene Cluster:   |
n.a. |
ChEMBL Identifier:   |
n.a. |
PubChem CID:   |
n.a. |
Chemical Classification**:   |
-
CHEMONTID:0000000 [Organic compounds]
-
[CHEMONTID:0000012] Lipids and lipid-like molecules
-
[CHEMONTID:0000259] Prenol lipids
[CHEMONTID:0001551] Diterpenoids
|
*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.
  Species Source
Organism ID |
Organism Name |
Taxonomy Level |
Family |
SuperKingdom |
Isolation Part |
Collection Location |
Collection Time |
Reference |
NPO26456 |
Jaborosa leucotricha |
Species |
Solanaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
PMID[12027740] |
NPO25854 |
Tripterospermum lanceolatum |
Species |
Gentianaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
PMID[1517742] |
NPO26643 |
Cichorium endivia |
Species |
Asteraceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
PMID[15877880] |
NPO26643 |
Cichorium endivia |
Species |
Asteraceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
PMID[18460139] |
NPO25518 |
Hedychium coronarium |
Species |
Zingiberaceae |
Eukaryota |
rhizomes |
n.a. |
n.a. |
PMID[21106458] |
NPO26643 |
Cichorium endivia |
Species |
Asteraceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
PMID[6821187] |
NPO26643 |
Cichorium endivia |
Species |
Asteraceae |
Eukaryota |
|
n.a. |
n.a. |
Database[FooDB] |
NPO26643 |
Cichorium endivia |
Species |
Asteraceae |
Eukaryota |
Leaf |
n.a. |
n.a. |
Database[FooDB] |
NPO26643 |
Cichorium endivia |
Species |
Asteraceae |
Eukaryota |
Leaves |
n.a. |
|
Database[FooDB] |
NPO25962 |
Rhamnus cathartica |
Species |
Rhamnaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[HerDing] |
NPO25469 |
Lupinus luteus |
Species |
Fabaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[HerDing] |
NPO25518 |
Hedychium coronarium |
Species |
Zingiberaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[HerDing] |
NPO26113 |
Strychnos wallichiana |
Species |
Loganiaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[HerDing] |
NPO25264 |
Cerbera odollam |
Species |
Apocynaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[HerDing] |
NPO26643 |
Cichorium endivia |
Species |
Asteraceae |
Eukaryota |
n.a. |
n.a. |
|
Database[Phenol-Explorer] |
NPO26610 |
Spiraea formosana |
Species |
Rosaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCMID] |
NPO25518 |
Hedychium coronarium |
Species |
Zingiberaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCMID] |
NPO26113 |
Strychnos wallichiana |
Species |
Loganiaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCMID] |
NPO25264 |
Cerbera odollam |
Species |
Apocynaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCMID] |
NPO25469 |
Lupinus luteus |
Species |
Fabaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCMID] |
NPO25803 |
Strychnos elaeocarpa |
Species |
Loganiaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCMID] |
NPO25962 |
Rhamnus cathartica |
Species |
Rhamnaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCMID] |
NPO25469 |
Lupinus luteus |
Species |
Fabaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCM_Taiwan] |
NPO25518 |
Hedychium coronarium |
Species |
Zingiberaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[TCM_Taiwan] |
NPO14283 |
Ponera metallica |
Species |
Formicidae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO24733 |
Celastrus dispermus |
Species |
Celastraceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO26481 |
Astragalus kabadianus |
Species |
Fabaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO26392 |
Piptadenia colubrina |
Species |
Fabaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO25996 |
Stenolobium stans |
n.a. |
n.a. |
n.a. |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO15693 |
Guadua angustifolia |
Species |
Poaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO25264 |
Cerbera odollam |
Species |
Apocynaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO23410 |
Potentilla candicans |
Species |
Rosaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO25582 |
Aquilegia viridiflora |
Species |
Ranunculaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO26554 |
Hexagonia speciosa |
Species |
Carabidae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO26524 |
Chondria californica |
Species |
Rhodomelaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO19916 |
Phenax angustifolius |
Species |
Urticaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO25803 |
Strychnos elaeocarpa |
Species |
Loganiaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO25469 |
Lupinus luteus |
Species |
Fabaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO25962 |
Rhamnus cathartica |
Species |
Rhamnaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO25575 |
Streptomyces pseudovenezuelae |
Species |
Streptomycetaceae |
Bacteria |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO25393 |
Coelogyne flavida |
Species |
Orchidaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO26113 |
Strychnos wallichiana |
Species |
Loganiaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO25518 |
Hedychium coronarium |
Species |
Zingiberaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO26743 |
Lippia adoensis |
Species |
Verbenaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO26816 |
Clinopodium gracile |
Species |
Lamiaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO25086 |
Viburnum betulifolium |
Species |
Adoxaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO24829 |
Gyrostroma missouriense |
n.a. |
n.a. |
n.a. |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO26306 |
Pyrobaculum organotrophum |
Species |
Thermoproteaceae |
Archaea |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO26079 |
Asterococcus muratae |
Species |
Cerococcidae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO23589 |
Pecten irradians |
Species |
Pectinidae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO24894 |
Parmelia tinctina |
Species |
Parmeliaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO28819 |
Veronica liwanensis |
Species |
Plantaginaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO26643 |
Cichorium endivia |
Species |
Asteraceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO22353 |
Lucilia caesar |
Species |
Calliphoridae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO25906 |
Acacia linarioides |
Species |
Fabaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO26175 |
Spongionella gracilis |
Species |
Dictyodendrillidae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO13051 |
Perymenium jelskii |
Species |
Asteraceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO10372 |
Kiggelaria africana |
Species |
Achariaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO26610 |
Spiraea formosana |
Species |
Rosaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO7465 |
Vachellia leucophloea |
Species |
Fabaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO26456 |
Jaborosa leucotricha |
Species |
Solanaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO25768 |
Senecio ruwenzoriensis |
Species |
Asteraceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO13072 |
Rhamnus formosana |
Species |
Rhamnaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO25854 |
Tripterospermum lanceolatum |
Species |
Gentianaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO26846 |
Guettarda noumeana |
Species |
Rubiaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO24608 |
Gaertnera morindoides |
Species |
Rubiaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO17771 |
Senna didymobotrya |
Species |
Fabaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO21639 |
Prunus mahaleb |
Species |
Rosaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO26676 |
Daphne arisanensis |
Species |
Thymelaeaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO29093 |
Homalium longifolium |
Species |
Salicaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO26208 |
Brombya platynema |
Species |
Rutaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO26357 |
Trachyrhamphus serratus |
Species |
Syngnathidae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
NPO25732 |
Trichilia havanensis |
Species |
Meliaceae |
Eukaryota |
n.a. |
n.a. |
n.a. |
Database[UNPD] |
☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
☉ UNPD: Universal Natural Products Database [PMID: 23638153].
☉ StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
☉ TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
☉ TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
☉ TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
☉ TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
☉ HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
☉ MetaboLights: a metabolomics database [PMID: 27010336].
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].
  NP Quantity Composition/Concentration
Organism ID |
NP ID |
Organism Material Preparation |
Organism Part |
NP Quantity (Standard) |
NP Quantity (Minimum) |
NP Quantity (Maximum) |
Quantity Unit |
Reference |
☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
☉ DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
☉ PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].
  Biological Activity
Target ID |
Target Type |
Target Name |
Target Organism |
Activity Type |
Activity Relation |
Value |
Unit |
Reference |
☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.
  Chemically structural similarity: I. Similar Active Natural Products in NPASS
Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)
Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient
●  The left chart: Distribution of similarity level between NPC185556 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).
range |
Tanimoto Coefficient |
0-0.1 | 191 |
0.1-0.2 | 1205 |
0.2-0.3 | 4687 |
0.3-0.4 | 12352 |
0.4-0.5 | 11609 |
0.5-0.6 | 7138 |
0.6-0.7 | 4893 |
0.7-0.8 | 608 |
0.8-0.85 | 14 |
0.85-0.9 | 0 |
0.9-0.95 | 0 |
0.95-1 | 0 |
Similarity Score |
Similarity Level |
Natural Product ID |
  Chemically structural similarity: II. Similar Clinical/Approved Drugs
Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.
●  The left chart: Distribution of similarity level between NPC185556 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).
range |
Tanimoto Coefficient |
0-0.1 | 168 |
0.1-0.2 | 1577 |
0.2-0.3 | 3918 |
0.3-0.4 | 2449 |
0.4-0.5 | 626 |
0.5-0.6 | 240 |
0.6-0.7 | 168 |
0.7-0.8 | 4 |
0.8-0.85 | 0 |
0.85-0.9 | 0 |
0.9-0.95 | 0 |
0.95-1 | 0 |
Similarity Score |
Similarity Level |
Drug ID |
Developmental Stage |