Natural Product: NPC171409

Natural Product IDNPC171409
Common Name
?
The InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
Coptisine
IUPAC Name n.a.
Synonyms
Synthetic Gene Cluster n.a.
ChEMBL Identifier CHEMBL362071
PubChem CID 72322
Chemical Classification
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000279] Alkaloids and derivatives
      • [CHEMONTID:0001909] Protoberberine alkaloids and derivatives

The Chemical Classification was calculated by Classyfire, a software for chemical taxonomy calculation. Reference: DOI:10.1186/s13321-016-0174-y.

  Chemical Representations

Standard InCHIKey XYHOBCMEDLZUMP-UHFFFAOYSA-N
Standard InCHI InChI=1S/C19H14NO4/c1-2-16-19(24-10-21-16)14-8-20-4-3-12-6-17-18(23-9-22-17)7-13(12)15(20)5-11(1)14/h1-2,5-8H,3-4,9-10H2/q+1
SMILES C1Oc2c(O1)cc1c(c2)CC[n+]2c1cc1ccc3c(c1c2)OCO3

  Calculated Properties

Physi-Chem Properties

Molecular Weight:   320.09 Volume:   312.226
?
Van der Waals volume.
Dense:   1.025 LogP:   3.272
?
The logarithm of the n-octanol/water distribution coefficients.
logD7.4:   3.255
?
The logarithm of the n-octanol/water distribution coefficient at pH=7.4.
LogS:   -4.955
?
The logarithm of aqueous solubility value.
Rotatable Bonds:   0.0 Rigid Bonds:   29.0
TPSA:   40.8
?
Topological Polar Surface Area.
H-Bond Acceptor:   5.0
H-Bond Donor:   0.0 Rings:   6.0
Heavy Atoms:   5.0

MedChem Properties

QED Drug-Likeness Score:   0.597 GASA:   1.0
?
GASA represents the probability of being difficult to synthesize, ranging from 0 to 1.
Synthetic Accessibility Score:   3.016 Fsp3:   0.211
MCE-18:   65.739
?
MCE-18 stands for medicinal chemistry evolution.MCE-18≥45 is considered a suitable value.
Lipinski Rule-of-5:   Rejected
Pfizer Rule:   Accepted GSK Rule:   Rejected
Golden Triangle Rule:   Rejected BMS Rule:   0
Chelating Alert:   0 PAINS Alert:   0
Colloidal aggregators:   0.916 Fluc inhibitor:   0.001
?
The fluc inhibitor value is the probability of being fLuc inhibitors, within the range of 0 to 1.
Blue fluorescence:   0.777
?
The blue fluorescence value is the probability of being blue fluorescence, within the range of 0 to 1
Green fluorescence:   0.444
?
The green fluorescence value is the probability of being green fluorescence, within the range of 0 to 1
Reactive compounds:   0.026 Promiscuous compounds:   0.58

ADMET Properties (ADMETlab3.0)

ADMET: Absorption

Caco-2 Permeability:   -4.959 MDCK Permeability:   -4.665
Pgp-inhibitor:   0.004 Pgp-substrate:   0.999
PAMPA:   0.347
?
The experimental data for Peff was logarithmically transformed (logPeff). Molecules with log Peff values below 2.0 were classified as low-permeability (Category 0), while those with log Peff values exceeding 2.5 were classified as high-permeability (Category 1).
Human Intestinal Absorption (HIA):   0.004
20% Bioavailability (F20%):   0.925 30% Bioavailability (F30%):   0.033
50% Bioavailability (F50%):   0.998

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):   0.385 MRP1:   0.611
Plasma Protein Binding (PPB):   77.493% Volume Distribution (VD):   0.258
Fu: 27.272%
?
The fraction unbound in plasms.
OATP1B1 inhibitor:   0.278
OATP1B3 inhibitor:   0.243 BCRP inhibitor:   0.376
BSEP inhibitor:   0.999

ADMET: Metabolism

CYP1A2-inhibitor:   1.0 CYP1A2-substrate:   0.234
CYP2C19-inhibitor:   0.207 CYP2C19-substrate:   0.001
CYP2C9-inhibitor:   0.99 CYP2C9-substrate:   1.0
CYP2D6-inhibitor:   1.0 CYP2D6-substrate:   1.0
CYP3A4-inhibitor:   0.0 CYP3A4-substrate:   0.998
CYP2B6-substrate:   0.993 CYP2C8-inhibitor:   0.0
HLM stability:   0.69
?
Human liver microsomal (HLM) stability. Category 0: stable+ (HLM > 30 min); Category 1: unstable- (HLM ≤ 30 min). The output value is the probability of human liver microsomal instability, where a value closer to 1 indicates a higher likelihood of instability.

ADMET: Excretion

Clearance (CL):  3.323 Half-life (T1/2):  0.842

ADMET: Toxicity

hERG Blockers:  0.327 hERG Blockers (10um):  0.447
Human Hepatotoxicity (H-HT):  0.15 Drug-induced Liver Injury (DILI):  0.25
AMES Toxicity:  0.487 Rat Oral Acute Toxicity:  0.885
Maximum Recommended Daily Dose:  0.94 Skin Sensitization:  0.959
Carcinogencity:  0.868 Eye Corrosion:  0.012
Eye Irritation:  0.973 Respiratory Toxicity:  0.906
Drug-induced Neurotoxicity:  0.079 Ototoxicity:  0.065
Hematotoxicity:  0.075 Drug-induced Nephrotoxicity:  0.12
Genotoxicity:  0.995 RPMI-8226 Immunitoxicity:  0.132
A549 Cytotoxicity:  0.006 Hek293 Cytotoxicity:  0.607
BCF:   1.952
?
Bioconcentration factors are used for considering secondary poisoning potential and assessing risks to human health via the food chain. The unit is -log10[(mg/L)/(1000*MW)].
IGC50:   4.418
?
48 hour Tetrahymena pyriformis IGC50. The unit of IGC50 is -log10[(mg/L)/(1000*MW)].
LC50DM:   6.302
?
48 hour Daphnia magna LC50. The unit of LC50DM is -log10[(mg/L)/(1000*MW)].
LC50FM:   5.459
?
96 hour fathead minnow LC50. The unit of LC50FM is -log10[(mg/L)/(1000*MW)].

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO24758 Angelica dahurica Species Apiaceae Eukaryota n.a. root n.a. DOI[10.5012/bkcs.2003.24.11.1699]
NPO13757 Coptis japonica Species Ranunculaceae Eukaryota rhizomes n.a. n.a. PMID[11000020]
NPO26193 Piper methysticum Species Piperaceae Eukaryota n.a. n.a. n.a. PMID[11830162]
NPO29080 Ulex airensis Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[11858751]
NPO24758 Angelica dahurica Species Apiaceae Eukaryota n.a. root n.a. PMID[12510838]
NPO26193 Piper methysticum Species Piperaceae Eukaryota n.a. n.a. n.a. PMID[12809361]
NPO14337 Ecklonia stolonifera Species Lessoniaceae Eukaryota n.a. n.a. n.a. PMID[12913249]
NPO24758 Angelica dahurica Species Apiaceae Eukaryota n.a. root n.a. PMID[15646793]
NPO6328 Corydalis incisa Species Papaveraceae Eukaryota n.a. aerial part n.a. PMID[17366734]
NPO25373 Stereocaulon alpinum Species Stereocaulaceae Eukaryota n.a. n.a. n.a. PMID[18288807]
NPO9650 Zanthoxylum nitidum Species Rutaceae Eukaryota Stems; Barks n.a. n.a. PMID[18303853]
NPO9650 Zanthoxylum nitidum Species Rutaceae Eukaryota stem bark n.a. n.a. PMID[18303853]
NPO21435 Thalictrum faberi Species Ranunculaceae Eukaryota Roots n.a. n.a. PMID[19299148]
NPO25345 Corydalis ternata Species Papaveraceae Eukaryota tubers n.a. n.a. PMID[20594848]
NPO13757 Coptis japonica Species Ranunculaceae Eukaryota n.a. rhizome n.a. PMID[21401114]
NPO24758 Angelica dahurica Species Apiaceae Eukaryota n.a. n.a. n.a. PMID[21625478]
NPO24758 Angelica dahurica Species Apiaceae Eukaryota n.a. root n.a. PMID[21657081]
NPO827 Corydalis yanhusuo Species Papaveraceae Eukaryota n.a. n.a. n.a. PMID[22737858]
NPO827 Corydalis yanhusuo Species Papaveraceae Eukaryota n.a. n.a. n.a. PMID[23194502]
NPO26428 Ligularia sagitta Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[24913558]
NPO13962 Corydalis turtschaninovii Species Papaveraceae Eukaryota n.a. rhizome n.a. PMID[25277281]
NPO26193 Piper methysticum Species Piperaceae Eukaryota root n.a. n.a. PMID[25597012]
NPO13962 Corydalis turtschaninovii Species Papaveraceae Eukaryota n.a. tuber n.a. PMID[25670016]
NPO24758 Angelica dahurica Species Apiaceae Eukaryota n.a. n.a. n.a. PMID[27444348]
NPO25373 Stereocaulon alpinum Species Stereocaulaceae Eukaryota n.a. n.a. n.a. PMID[29878768]
NPO22441 Senna spectabilis Species Fabaceae Eukaryota flowers n.a. n.a. PMID[30413343]
NPO24758 Angelica dahurica Species Apiaceae Eukaryota Roots n.a. n.a. PMID[31464439]
NPO14045 Corydalis decumbens Species Papaveraceae Eukaryota n.a. n.a. n.a. PMID[31599578]
NPO827 Corydalis yanhusuo Species Papaveraceae Eukaryota n.a. n.a. n.a. PMID[32058719]
NPO16414 Thuja plicata Species Cupressaceae Eukaryota n.a. n.a. n.a. PMID[36985451]
NPO16414 Thuja plicata Species Cupressaceae Eukaryota n.a. n.a. n.a. PMID[38794396]
NPO21435 Thalictrum faberi Species Ranunculaceae Eukaryota n.a. n.a. n.a. PMID[7528786]
NPO10662 Scrippsiella trochoidea Species Peridiniaceae Eukaryota n.a. n.a. n.a. PMID[8021655]
NPO25657 Mezzettia leptopoda Species Annonaceae Eukaryota n.a. n.a. n.a. PMID[9868159]
NPO11120.1 Brassica rapa subsp. chinensis Subspecies Brassicaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO22622 Coptis deltoidea Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO827 Corydalis yanhusuo Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO25761 Thalictrum microgynum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO16414 Thuja plicata Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO24476 Phellodendron amurense Species Rutaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO22242 Phellodendron chinense Species Rutaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO26538 Phellodendron chinese Species Rutaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO9650 Zanthoxylum nitidum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO22441 Senna spectabilis Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO26193 Piper methysticum Species Piperaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO2341 Fibraurea recisa Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO23223 Symphytum officinale Species Boraginaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28372 Corydalis pallida Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO2114.1 Thalictrum minus var. hypoleucum Varieties Ranunculaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO742 Aloe saponaria Species Asphodelaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO6328 Corydalis incisa Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO13297 Thalictrum atriplex Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO21435 Thalictrum faberi Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO13637 Thalictrum foliolosum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO15847 Thalictrum glandulosissimum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO16640 Thalictrum petaloideum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO21451 Thalictrum simplex Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO30288 Thalictrum thunbergii Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO13962 Corydalis turtschaninovii Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO5144 Berberis japonica Species Berberidaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO29080 Ulex airensis Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO6295 Astragalus trojanus Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28612 Hypecoum leptocarpum Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO6137 Lepista glaucocana Species Tricholomataceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO2787 Cussonia racemosa Species Araliaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO11457 Chelidonium majus Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO14045 Corydalis decumbens Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO25881 Stachys plumosa Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO24480 Diospyros ebenum Species Ebenaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO13757 Coptis japonica Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO11281 Euphorbia fortissima Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO15929 Corydalis ledebouriana Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO15522 Michelia fuscata Species Magnoliaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO14337 Ecklonia stolonifera Species Lessoniaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO29868 Dicentra spectabilis Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO30280 Mahonia japonica n.a. n.a. n.a. n.a. n.a. n.a. Database[COCONUT]
NPO25345 Corydalis ternata Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO8144 Labidiaster annulatus Species Labidiasteridae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO25373 Stereocaulon alpinum Species Stereocaulaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO5649 Coptis chinensis Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO29008 Coptis teeta Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO16092 Calocephalus knappii Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO11120.1 Brassica rapa subsp. chinensis Subspecies Brassicaceae Eukaryota n.a. n.a. Database[FooDB]
NPO30280 Mahonia japonica n.a. n.a. n.a. n.a. n.a. n.a. Database[HerDing]
NPO13637 Thalictrum foliolosum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO24758 Angelica dahurica Species Apiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO14045 Corydalis decumbens Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO21451 Thalictrum simplex Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO5649 Coptis chinensis Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO24480 Diospyros ebenum Species Ebenaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO15929 Corydalis ledebouriana Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO14337 Ecklonia stolonifera Species Lessoniaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO11457 Chelidonium majus Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO16640 Thalictrum petaloideum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO5649.1 Coptis chinensis var. brevisepala Varieties Ranunculaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO22622 Coptis deltoidea Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO827 Corydalis yanhusuo Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO26193 Piper methysticum Species Piperaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO29868 Dicentra spectabilis Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO9650 Zanthoxylum nitidum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO28638 Corydalis longicalcarata Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO15847 Thalictrum glandulosissimum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO13757 Coptis japonica Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO30288 Thalictrum thunbergii Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO24476 Phellodendron amurense Species Rutaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO6027.1 Corydalis ambigua var. amurensis Varieties Papaveraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO28698 Corydalis remota Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO22242 Phellodendron chinense Species Rutaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO23519 Coptis teetoides Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO12903 Coptis gulinensis Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO13297 Thalictrum atriplex Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO10461 Corydalis adunca Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO21435 Thalictrum faberi Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO6328 Corydalis incisa Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO2341 Fibraurea recisa Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO23223 Symphytum officinale Species Boraginaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO4715 Coptis linearisepala Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO28372 Corydalis pallida Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO25761 Thalictrum microgynum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO28612 Hypecoum leptocarpum Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO1106 Artabotrys maingayi Species Annonaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO6637 Corydalis repens Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO22532 Coptis omeiensis Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO16414 Thuja plicata Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO25973 Hypecoum japonicum Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO31576 Brassica chinensis Species Brassicaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO2114.1 Thalictrum minus var. hypoleucum Varieties Ranunculaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO26428 Ligularia sagitta Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO11120.1 Brassica rapa subsp. chinensis Subspecies Brassicaceae Eukaryota n.a. n.a. Database[Phenol-Explorer]
NPO23223 Symphytum officinale Species Boraginaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO19361 Herba meconpsis integrifoliae n.a. n.a. n.a. n.a. n.a. n.a. Database[TCMID]
NPO24758 Angelica dahurica Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28612 Hypecoum leptocarpum Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO12903 Coptis gulinensis Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO2114.1 Thalictrum minus var. hypoleucum Varieties Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO5144 Berberis japonica Species Berberidaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO14045 Corydalis decumbens Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO6328 Corydalis incisa Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO22242 Phellodendron chinense Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28698 Corydalis remota Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO4715 Coptis linearisepala Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO22622 Coptis deltoidea Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO24087 Psacalium peltatum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO14337 Ecklonia stolonifera Species Lessoniaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO11457 Chelidonium majus Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28372 Corydalis pallida Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO827 Corydalis yanhusuo Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO2787 Cussonia racemosa Species Araliaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO2341 Fibraurea recisa Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO13637 Thalictrum foliolosum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO24476 Phellodendron amurense Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO5649 Coptis chinensis Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO17796 Lamprocapnos spectabilis Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO21435 Thalictrum faberi Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO10461 Corydalis adunca Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO6027.1 Corydalis ambigua var. amurensis Varieties Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO21451 Thalictrum simplex Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO25373 Stereocaulon alpinum Species Stereocaulaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO15929 Corydalis ledebouriana Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO15847 Thalictrum glandulosissimum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO13297 Thalictrum atriplex Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO25761 Thalictrum microgynum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO23519 Coptis teetoides Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO6637 Corydalis repens Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO5649.1 Coptis chinensis var. brevisepala Varieties Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO9650 Zanthoxylum nitidum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO25973 Hypecoum japonicum Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO13757 Coptis japonica Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO16414 Thuja plicata Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO22532 Coptis omeiensis Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO25166 Corydalis ophiocarpa Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28638 Corydalis longicalcarata Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO6295 Astragalus trojanus Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO26193 Piper methysticum Species Piperaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO16640 Thalictrum petaloideum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO24480 Diospyros ebenum Species Ebenaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO26428 Ligularia sagitta Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO1106 Artabotrys maingayi Species Annonaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO11120.1 Brassica rapa subsp. chinensis Subspecies Brassicaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO11281 Euphorbia fortissima Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO26230 Lappula echinata Species Boraginaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO22242 Phellodendron chinense Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO30280 Mahonia japonica n.a. n.a. n.a. n.a. n.a. n.a. Database[TCM_Taiwan]
NPO26193 Piper methysticum Species Piperaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO24758 Angelica dahurica Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO30288 Thalictrum thunbergii Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO5649 Coptis chinensis Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO827 Corydalis yanhusuo Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO24476 Phellodendron amurense Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO28698 Corydalis remota Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO11457 Chelidonium majus Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO6328 Corydalis incisa Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO13637 Thalictrum foliolosum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO14045 Corydalis decumbens Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO28372 Corydalis pallida Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO9650 Zanthoxylum nitidum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO29868 Dicentra spectabilis Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO15929 Corydalis ledebouriana Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO24480 Diospyros ebenum Species Ebenaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO23223 Symphytum officinale Species Boraginaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO25166 Corydalis ophiocarpa Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO22242 Phellodendron chinense Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO2341 Fibraurea recisa Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO5649 Coptis chinensis Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO29008 Coptis teeta Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO13757 Coptis japonica Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO11457 Chelidonium majus Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO827 Corydalis yanhusuo Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO24758 Angelica dahurica Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO22622 Coptis deltoidea Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO9650 Zanthoxylum nitidum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO24476 Phellodendron amurense Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO25345 Corydalis ternata Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO14045 Corydalis decumbens Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO13962 Corydalis turtschaninovii Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO26538 Phellodendron chinese Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO24480 Diospyros ebenum Species Ebenaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24087 Psacalium peltatum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16414 Thuja plicata Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7177 Inocybe rimosa Species Inocybaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24868 Streptomyces aizunensis Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO13962 Corydalis turtschaninovii Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5144 Berberis japonica Species Berberidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22622 Coptis deltoidea Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16670 Centaurea sclerolepis Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15522 Michelia fuscata Species Magnoliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25484 Bumelia obtusifolia n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO25373 Stereocaulon alpinum Species Stereocaulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1106 Artabotrys maingayi Species Annonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28372 Corydalis pallida Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2787 Cussonia racemosa Species Araliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25761 Thalictrum microgynum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25624 Teclea sudanica Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13637 Thalictrum foliolosum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14345 Androsace septentrionalis Species Primulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25657 Mezzettia leptopoda Species Annonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26740 Tolypothrix distorta Species Tolypothrichaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO336 Chaetomorpha moniligera Species Cladophoraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22532 Coptis omeiensis Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25166 Corydalis ophiocarpa Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO742 Aloe saponaria Species Asphodelaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22242 Phellodendron chinense Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24758 Angelica dahurica Species Apiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11281 Euphorbia fortissima Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10662 Scrippsiella trochoidea Species Peridiniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25881 Stachys plumosa Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26193 Piper methysticum Species Piperaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15415 Othonna obtusiloba Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25345 Corydalis ternata Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16169 Sedum altissimum Species Crassulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6137 Lepista glaucocana Species Tricholomataceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16092 Calocephalus knappii Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13757 Coptis japonica Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25316 Lasius niger Species Formicidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26230 Lappula echinata Species Boraginaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6295 Astragalus trojanus Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13235 Berberis chitria Species Berberidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO29080 Ulex airensis Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26428 Ligularia sagitta Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22441 Senna spectabilis Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8144 Labidiaster annulatus Species Labidiasteridae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11120.1 Brassica rapa subsp. chinensis Subspecies Brassicaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15929 Corydalis ledebouriana Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21451 Thalictrum simplex Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1219 Theobroma speciosum Species Malvaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23223 Symphytum officinale Species Boraginaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28698 Corydalis remota Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO29053 Dictyostelium longosporum Species n.a. Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5649 Coptis chinensis Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6328 Corydalis incisa Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14337 Ecklonia stolonifera Species Lessoniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO29008 Coptis teeta Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14045 Corydalis decumbens Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24476 Phellodendron amurense Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23519 Coptis teetoides Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9650 Zanthoxylum nitidum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6637 Corydalis repens Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17796 Lamprocapnos spectabilis Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO827 Corydalis yanhusuo Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2114.1 Thalictrum minus var. hypoleucum Varieties Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



  NP Quantity Composition/Concentration

Organism ID Organism Name Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



 Biological Activity

Molecular-level activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT1032 Individual protein Neuraminidase Influenza A virus (strain A/USSR/90/1977 H1N1) IC50 = 25300.0 nM PMID[25277281]
NPT1032 Individual protein Neuraminidase Influenza A virus (strain A/USSR/90/1977 H1N1) IC50 = 26400.0 nM PMID[25277281]
NPT1078 Individual protein Indoleamine 2,3-dioxygenase Homo sapiens IC50 = 6300.0 nM PMID[36917881]
NPT21577 Nucleic-acid quadruplex DNA Homo sapiens EC50 = 12010.0 nM PMID[29148767]
NPT21577 Nucleic-acid quadruplex DNA Homo sapiens EC50 = 5930.0 nM PMID[29148767]

In vitro activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT517 Cell line Panel NCI-60 (60 carcinoma cell lines) Homo sapiens GI50 = 260.0 nM PMID[15743190]
NPT28438 Unchecked Unchecked n.a. IC50 = 1830.0 nM PMID[33131885]
NPT2 Others Unspecified n.a. IC50 = 25100.0 nM PMID[25277281]

In vivo activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference





 Experimental ADME

Experiment Model Experiment Tissue ADME Type ADME Relation ADME Value ADME Unit Reference





 Experimental Toxicity

Quantitative toxicity

Experiment Model Experiment Organism Toxicity Type Toxicity Relation Toxicity Value Toxicity Unit Reference

Common Abbreviations:
LC: Lethal Concentration; LD: Lethal Dose; LT:Lethal Time; NOAEL: No-observed-adverse-effect Level; BMDL: Benchmark Dose Lower Confidence Limit; BMD: Benchmark Dose; BMC:Benchmark Concentration; LOAEL: Lowest Observed Adverse Effect Level; RfD:Reference Dose; RfC:Reference Concentration; MRL: Minimal Risk Level; MEG: Maximum Exposure Guideline; PAC: Protective Action Criteria

Categorical toxicity labels

Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption
Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP toxicity records from domain-specific databases. These databases include:
ToxValDB: a curated database that compiles quantitative toxicity values for chemicals from diverse public sources to support toxicological research and risk assessment.
TOXRIC: a comprehensive, free-to-access, online database providing toxicological/feature data. The toxicity labels are retrieved from this database. [PMID: 36400569]


  Chemically structural similarity

Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes approximately 50,000 NPs with experimentally-derived bioactivity available in NPASS)

Similarity is measured using the Tanimoto coefficient (Tc) , which compares the binary fingerprints of two molecules. Tc is calculated as the intersection divided by the union of '1' bits in the fingerprints, ranging from 0 to 1, with 1 indicating highest similarity.

●  The left chart: Distribution of similarity level between NPC171409 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.5 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9821 High Similarity NPC96405
0.8983 High Similarity NPC202768
0.8814 High Similarity NPC53069
0.8667 High Similarity NPC296482
0.7377 Intermediate Similarity NPC16452
0.7258 Intermediate Similarity NPC36229
0.6825 Remote Similarity NPC135549
0.6615 Remote Similarity NPC313189
0.6176 Remote Similarity NPC202605
0.6056 Remote Similarity NPC481435
0.5455 Remote Similarity NPC4071
0.5373 Remote Similarity NPC607600
0.5068 Remote Similarity NPC112206

Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC171409 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.5 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.8814 High Similarity NPD3816 Phase 3
0.8667 High Similarity NPD3815 Phase 1

Bioactivity similarity

  Bioactivity similarity

Similar Natural Products in NPASS

Similarity level is defined by Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.
Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data