Structure

Physi-Chem Properties

Molecular Weight:  326.1
Volume:  308.023
LogP:  -0.047
LogD:  -0.089
LogS:  -0.891
# Rotatable Bonds:  5
TPSA:  136.68
# H-Bond Aceptor:  8
# H-Bond Donor:  5
# Rings:  2
# Heavy Atoms:  8

MedChem Properties

QED Drug-Likeness Score:  0.342
Synthetic Accessibility Score:  3.564
Fsp3:  0.4
Lipinski Rule-of-5:  Accepted
Pfizer Rule:  Accepted
GSK Rule:  Accepted
BMS Rule:  0
Golden Triangle Rule:  Accepted
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -6.041
MDCK Permeability:  3.839711644104682e-05
Pgp-inhibitor:  0.001
Pgp-substrate:  0.133
Human Intestinal Absorption (HIA):  0.731
20% Bioavailability (F20%):  0.07
30% Bioavailability (F30%):  0.994

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.385
Plasma Protein Binding (PPB):  73.8102798461914%
Volume Distribution (VD):  0.393
Pgp-substrate:  27.10039520263672%

ADMET: Metabolism

CYP1A2-inhibitor:  0.123
CYP1A2-substrate:  0.029
CYP2C19-inhibitor:  0.026
CYP2C19-substrate:  0.075
CYP2C9-inhibitor:  0.008
CYP2C9-substrate:  0.731
CYP2D6-inhibitor:  0.007
CYP2D6-substrate:  0.229
CYP3A4-inhibitor:  0.014
CYP3A4-substrate:  0.049

ADMET: Excretion

Clearance (CL):  2.785
Half-life (T1/2):  0.891

ADMET: Toxicity

hERG Blockers:  0.053
Human Hepatotoxicity (H-HT):  0.065
Drug-inuced Liver Injury (DILI):  0.033
AMES Toxicity:  0.176
Rat Oral Acute Toxicity:  0.593
Maximum Recommended Daily Dose:  0.005
Skin Sensitization:  0.917
Carcinogencity:  0.123
Eye Corrosion:  0.004
Eye Irritation:  0.088
Respiratory Toxicity:  0.034

Download Data

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General Info & Identifiers & Properties  
Structure MOL file  
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Biological Activities  
Similar NPs/Drugs  

  Natural Product: NPC11724

Natural Product ID:  NPC11724
Common Name*:   Coumaroyl-Beta-D-Glucoside
IUPAC Name:   [(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl] (E)-3-(4-hydroxyphenyl)prop-2-enoate
Synonyms:  
Standard InCHIKey:  DSNCQKUYZOSARM-QVLXMGEUSA-N
Standard InCHI:  InChI=1S/C15H18O8/c16-7-10-12(19)13(20)14(21)15(22-10)23-11(18)6-3-8-1-4-9(17)5-2-8/h1-6,10,12-17,19-21H,7H2/b6-3+/t10-,12-,13+,14-,15+/m1/s1
SMILES:  c1cc(ccc1/C=C/C(=O)O[C@H]1[C@@H]([C@H]([C@@H]([C@@H](CO)O1)O)O)O)O
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL464612
PubChem CID:   14158117
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000261] Phenylpropanoids and polyketides
      • [CHEMONTID:0000476] Cinnamic acids and derivatives
        • [CHEMONTID:0001391] Hydroxycinnamic acids and derivatives
          • [CHEMONTID:0003002] Hydroxycinnamic acid esters
            • [CHEMONTID:0003003] Hydroxycinnamic acid glycosides

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO16501.2 Capsicum annuum Under-species n.a. n.a. n.a. n.a. Granola: the 1999 growing season DOI[10.1016/S0956-7135(03)00077-X]
NPO10339 Fragaria x ananassa Species Rosaceae Eukaryota Fruit n.a. n.a. DOI[10.1016/S0963-9969(99)00095-2]
NPO10339 Fragaria x ananassa Species Rosaceae Eukaryota Leaves (mother plant) Suwon, Korea 2011-Sep DOI[10.7235/HORT.2013.12200]
NPO10339 Fragaria x ananassa Species Rosaceae Eukaryota Roots (runner plant) Suwon, Korea 2011-Sep DOI[10.7235/HORT.2013.12200]
NPO10339 Fragaria x ananassa Species Rosaceae Eukaryota Fruits Suwon, Korea 2012-Nov DOI[10.7235/HORT.2013.12200]
NPO10339 Fragaria x ananassa Species Rosaceae Eukaryota Leaves Suwon, Korea DOI[10.7235/HORT.2013.12200]
NPO10339 Fragaria x ananassa Species Rosaceae Eukaryota Runners Suwon, Korea 2011-Sep DOI[10.7235/HORT.2013.12200]
NPO10339 Fragaria x ananassa Species Rosaceae Eukaryota Leaves (runner plant) Suwon, Korea 2011-Sep DOI[10.7235/HORT.2013.12200]
NPO10339 Fragaria x ananassa Species Rosaceae Eukaryota Roots (mother plant) Suwon, Korea 2011-Sep DOI[10.7235/HORT.2013.12200]
NPO24176 Streptomyces fradiae Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[10757717]
NPO16501.2 Capsicum annuum Under-species n.a. n.a. seeds n.a. n.a. PMID[12105963]
NPO2353 Bituminaria bituminosa Species Fabaceae Eukaryota n.a. aerial part n.a. PMID[12943781]
NPO7484 Salacia chinensis Species Celastraceae Eukaryota n.a. n.a. n.a. PMID[12951446]
NPO590 Malus domestica Species Rosaceae Eukaryota n.a. n.a. n.a. PMID[13160012]
NPO7484 Salacia chinensis Species Celastraceae Eukaryota stems Thailand n.a. PMID[14510595]
NPO10339 Fragaria x ananassa Species Rosaceae Eukaryota n.a. n.a. n.a. PMID[1453178]
NPO14555 Porella swartziana Species Porellaceae Eukaryota n.a. n.a. n.a. PMID[14738381]
NPO14555 Porella swartziana Species Porellaceae Eukaryota n.a. Argentine n.a. PMID[14738381]
NPO10339 Fragaria x ananassa Species Rosaceae Eukaryota Fruits n.a. n.a. PMID[15568772]
NPO14695 Populus davidiana Species Salicaceae Eukaryota stem bark n.a. n.a. PMID[16989539]
NPO1960 Lygodium japonicum Species Lygodiaceae Eukaryota n.a. n.a. n.a. PMID[18619266]
NPO4446 Prunus davidiana Species Rosaceae Eukaryota n.a. n.a. n.a. PMID[2045817]
NPO21463.1 Aruncus dioicus Under-species n.a. n.a. aerial parts n.a. n.a. PMID[21546250]
NPO590 Malus domestica Species Rosaceae Eukaryota n.a. fruit n.a. PMID[21648406]
NPO12977 Solenopsis invicta Species Formicidae Eukaryota n.a. n.a. n.a. PMID[21905650]
NPO4446 Prunus davidiana Species Rosaceae Eukaryota seeds n.a. n.a. PMID[23985009]
NPO23289 Heracleum sphondylium Species Apiaceae Eukaryota n.a. n.a. n.a. PMID[24697288]
NPO16501.2 Capsicum annuum Under-species n.a. n.a. n.a. n.a. n.a. PMID[2831703]
NPO14826 Streptomyces mobaraensis Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[32998509]
NPO40071 Cissus rotundifolia Species Vitaceae Eukaryota n.a. n.a. n.a. PMID[33176095]
NPO9420 Aspergillus arenarius Species Aspergillaceae Eukaryota sclerotia n.a. n.a. PMID[9599285]
NPO10339 Fragaria x ananassa Species Rosaceae Eukaryota n.a. n.a. Database[FooDB]
NPO16038 Ribes rubrum Species Grossulariaceae Eukaryota n.a. n.a. Database[FooDB]
NPO16038 Ribes rubrum Species Grossulariaceae Eukaryota Fruit n.a. n.a. Database[FooDB]
NPO10339 Fragaria x ananassa Species Rosaceae Eukaryota Fruits n.a. Database[FooDB]
NPO16038 Ribes rubrum Species Grossulariaceae Eukaryota Fruits n.a. Database[FooDB]
NPO16501.2 Capsicum annuum Under-species n.a. n.a. n.a. n.a. Database[FooDB]
NPO15961 Sida cordifolia Species Malvaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO15510 Kummerowia striata Species Fabaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO5728 Gerbera piloselloides Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO1960 Lygodium japonicum Species Lygodiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO14695 Populus davidiana Species Salicaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO16847 Consolida ajacis Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO12416 Quercus mongolica Species Fagaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO4446 Prunus davidiana Species Rosaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO23289 Heracleum sphondylium Species Apiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO16501.2 Capsicum annuum Under-species n.a. n.a. n.a. n.a. Database[Phenol-Explorer]
NPO590 Malus domestica Species Rosaceae Eukaryota Fruits n.a. Database[Phenol-Explorer]
NPO590 Malus domestica Species Rosaceae Eukaryota n.a. n.a. Database[Phenol-Explorer]
NPO10339 Fragaria x ananassa Species Rosaceae Eukaryota Fruits n.a. Database[Phenol-Explorer]
NPO16038 Ribes rubrum Species Grossulariaceae Eukaryota Fruits n.a. Database[Phenol-Explorer]
NPO14869 Ormosia panamensis Species Limoniidae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO15510 Kummerowia striata Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO12450 Cneorum pulverulentum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO10339 Fragaria x ananassa Species Rosaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO5728 Gerbera piloselloides Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO23289 Heracleum sphondylium Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO1960 Lygodium japonicum Species Lygodiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO4446 Prunus davidiana Species Rosaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO12416 Quercus mongolica Species Fagaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO15961 Sida cordifolia Species Malvaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO16847 Consolida ajacis Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO14695 Populus davidiana Species Salicaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO590 Malus domestica Species Rosaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO1960 Lygodium japonicum Species Lygodiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO4446 Prunus davidiana Species Rosaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO12416 Quercus mongolica Species Fagaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO16847 Consolida ajacis Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO5728 Gerbera piloselloides Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO4446 Prunus davidiana Species Rosaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO4935 Dinemasporium strigosum Species Chaetosphaeriaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14555 Porella swartziana Species Porellaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16516 Centaurea seridis Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15755 Thymbra spicata Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14695 Populus davidiana Species Salicaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11194 Bombus hortorum Species Apidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16758 Satureja cuneifolia Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10339 Fragaria x ananassa Species Rosaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5269 Coleus garckeanus Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5552 Solanum sisymbriifolium Species Solanaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13548 Chrozophora obliqua Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7484 Salacia chinensis Species Celastraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9780 Merremia umbellata Species Convolvulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16175 Trichia floriformis Species Trichiidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8499 Osmerus mordax Species Osmeridae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13859 Senecio flavus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11881 Adenopeltis colliguaya Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15858 Phoebe formosana Species Lauraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13230 Pedicularis condensata Species Orobanchaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14034 Salvia coulteri Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15015 Meconopsis napaulensis Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11599 Elaeagnus commutata Species Elaeagnaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5728 Gerbera piloselloides Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13710 Lyophyllum shimeji Species Lyophyllaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14869 Ormosia panamensis Species Limoniidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12555 Aspergillus quadrilineatus Species Aspergillaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9420 Aspergillus arenarius Species Aspergillaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3391 Jungermannia obovata Species Jungermanniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2353 Bituminaria bituminosa Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23289 Heracleum sphondylium Species Apiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14826 Streptomyces mobaraensis Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO16678 Flindersia brayleyana Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15272 Mascarenhasia arborescens Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15510 Kummerowia striata Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16428 Millettia conraui Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12450 Cneorum pulverulentum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO590 Malus domestica Species Rosaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13375 Palafoxia rosea Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12680 Perityle vaseyi Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5078 Turraeanthus mannii Species Meliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16038 Ribes rubrum Species Grossulariaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24732 Cereus weberi Species Sagartiidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12416 Quercus mongolica Species Fagaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15961 Sida cordifolia Species Malvaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15138 Rheum webbianum Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15393 Eucalyptus flocktoniae Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24176 Streptomyces fradiae Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO4267 Ceratocystis clavigera Species Ceratocystidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26017 Dalbergia stipulacea Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16847 Consolida ajacis Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12977 Solenopsis invicta Species Formicidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14218 Spodoptera littoralis Species 0ctuidae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference
NPO10339 NPC11724 n.a. Fruits 4.36433 n.a. n.a. mg/100g of FW Database [Phenol-Explorer]
NPO16038 NPC11724 n.a. Fruits 0.06667 n.a. n.a. mg/100g of FW Database [Phenol-Explorer]
NPO590 NPC11724 n.a. Fruits 0.156 n.a. n.a. mg/100g of FW Database [Phenol-Explorer]
NPO16501.2 NPC11724 n.a. n.a. 0.12 n.a. n.a. mg/100g of FW Database [Phenol-Explorer]
NPO16501.2 NPC11724 n.a. n.a. 0.295 n.a. n.a. mg/100g of FW Database [Phenol-Explorer]
NPO590 NPC11724 n.a. n.a. 0.08933 n.a. n.a. mg/100mL Database [Phenol-Explorer]

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT15 Cell Line Jurkat Homo sapiens IC50 > 100.0 ug.mL-1 PMID[569034]
NPT35 Others n.a. Activity = 0.78 n.a. PMID[569033]
NPT1 Others Radical scavenging activity IC50 > 100000.0 nM PMID[569034]
NPT2 Others Unspecified FC = 2.0 n.a. PMID[569035]
NPT2 Others Unspecified EC50 = 7700.0 nM PMID[569035]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC11724 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9913 High Similarity NPC52097
0.9912 High Similarity NPC476872
0.9661 High Similarity NPC126991
0.9661 High Similarity NPC83218
0.958 High Similarity NPC252114
0.958 High Similarity NPC471157
0.95 High Similarity NPC471881
0.95 High Similarity NPC45224
0.95 High Similarity NPC288416
0.95 High Similarity NPC471882
0.95 High Similarity NPC173150
0.95 High Similarity NPC156692
0.95 High Similarity NPC106677
0.95 High Similarity NPC35288
0.9421 High Similarity NPC232880
0.9421 High Similarity NPC225307
0.9344 High Similarity NPC229784
0.9344 High Similarity NPC477294
0.9344 High Similarity NPC477293
0.9344 High Similarity NPC253595
0.9339 High Similarity NPC476873
0.9298 High Similarity NPC313193
0.9256 High Similarity NPC61181
0.9194 High Similarity NPC281798
0.9194 High Similarity NPC235294
0.9194 High Similarity NPC246869
0.9194 High Similarity NPC219677
0.9194 High Similarity NPC46137
0.9194 High Similarity NPC225384
0.9194 High Similarity NPC478255
0.9194 High Similarity NPC138777
0.9194 High Similarity NPC254819
0.918 High Similarity NPC103533
0.9138 High Similarity NPC175771
0.912 High Similarity NPC473924
0.912 High Similarity NPC473285
0.9048 High Similarity NPC254398
0.9048 High Similarity NPC28637
0.8976 High Similarity NPC886
0.8976 High Similarity NPC471883
0.8976 High Similarity NPC287597
0.8976 High Similarity NPC34293
0.8966 High Similarity NPC157338
0.8952 High Similarity NPC146540
0.8906 High Similarity NPC476870
0.8906 High Similarity NPC263829
0.8898 High Similarity NPC114116
0.888 High Similarity NPC295970
0.8837 High Similarity NPC157554
0.8837 High Similarity NPC470572
0.8837 High Similarity NPC472132
0.8837 High Similarity NPC166180
0.8837 High Similarity NPC186418
0.8837 High Similarity NPC471345
0.8828 High Similarity NPC169398
0.8814 High Similarity NPC148055
0.8769 High Similarity NPC476376
0.8769 High Similarity NPC78363
0.8769 High Similarity NPC260425
0.8702 High Similarity NPC476383
0.8702 High Similarity NPC100389
0.8702 High Similarity NPC171134
0.8702 High Similarity NPC68092
0.8702 High Similarity NPC89105
0.8702 High Similarity NPC328273
0.8702 High Similarity NPC49597
0.8702 High Similarity NPC321184
0.8702 High Similarity NPC81515
0.8702 High Similarity NPC220942
0.8702 High Similarity NPC31745
0.8702 High Similarity NPC226005
0.8702 High Similarity NPC321638
0.8702 High Similarity NPC197316
0.8702 High Similarity NPC64141
0.8702 High Similarity NPC205195
0.8702 High Similarity NPC220936
0.8702 High Similarity NPC472350
0.8692 High Similarity NPC37468
0.8678 High Similarity NPC282409
0.8678 High Similarity NPC469702
0.8636 High Similarity NPC202700
0.8626 High Similarity NPC101686
0.8626 High Similarity NPC469364
0.8626 High Similarity NPC65262
0.8615 High Similarity NPC185778
0.8609 High Similarity NPC184633
0.8607 High Similarity NPC269242
0.8607 High Similarity NPC476445
0.8607 High Similarity NPC469548
0.8607 High Similarity NPC160854
0.8607 High Similarity NPC469704
0.8607 High Similarity NPC469703
0.8607 High Similarity NPC476448
0.8607 High Similarity NPC201402
0.8583 High Similarity NPC469549
0.8571 High Similarity NPC46644
0.8571 High Similarity NPC186406
0.8571 High Similarity NPC134405
0.8571 High Similarity NPC476385
0.8571 High Similarity NPC476377
0.8571 High Similarity NPC47471
0.856 High Similarity NPC123704
0.855 High Similarity NPC103409
0.8548 High Similarity NPC212176
0.8537 High Similarity NPC266045
0.8537 High Similarity NPC55608
0.8537 High Similarity NPC469686
0.8525 High Similarity NPC469708
0.8525 High Similarity NPC60589
0.8507 High Similarity NPC157816
0.8507 High Similarity NPC140502
0.8507 High Similarity NPC145319
0.8507 High Similarity NPC265648
0.8507 High Similarity NPC222433
0.8496 Intermediate Similarity NPC473799
0.8496 Intermediate Similarity NPC475530
0.8468 Intermediate Similarity NPC471067
0.8455 Intermediate Similarity NPC469412
0.8455 Intermediate Similarity NPC198734
0.8444 Intermediate Similarity NPC264632
0.8444 Intermediate Similarity NPC247032
0.8444 Intermediate Similarity NPC269141
0.8444 Intermediate Similarity NPC76406
0.8444 Intermediate Similarity NPC478250
0.8444 Intermediate Similarity NPC476381
0.8444 Intermediate Similarity NPC204644
0.8444 Intermediate Similarity NPC293154
0.8444 Intermediate Similarity NPC476375
0.8444 Intermediate Similarity NPC175214
0.8444 Intermediate Similarity NPC96795
0.8444 Intermediate Similarity NPC298257
0.8444 Intermediate Similarity NPC478239
0.8444 Intermediate Similarity NPC40305
0.8444 Intermediate Similarity NPC476397
0.8444 Intermediate Similarity NPC112
0.8444 Intermediate Similarity NPC476378
0.8444 Intermediate Similarity NPC205864
0.8444 Intermediate Similarity NPC476380
0.8444 Intermediate Similarity NPC105005
0.8444 Intermediate Similarity NPC119537
0.8444 Intermediate Similarity NPC476384
0.8433 Intermediate Similarity NPC7518
0.8433 Intermediate Similarity NPC154262
0.8433 Intermediate Similarity NPC159387
0.8433 Intermediate Similarity NPC137501
0.8403 Intermediate Similarity NPC474641
0.84 Intermediate Similarity NPC470907
0.84 Intermediate Similarity NPC474275
0.84 Intermediate Similarity NPC232454
0.84 Intermediate Similarity NPC178449
0.84 Intermediate Similarity NPC224208
0.839 Intermediate Similarity NPC470825
0.8382 Intermediate Similarity NPC77922
0.8382 Intermediate Similarity NPC473281
0.8382 Intermediate Similarity NPC202391
0.8382 Intermediate Similarity NPC476867
0.8382 Intermediate Similarity NPC296659
0.8382 Intermediate Similarity NPC297342
0.8382 Intermediate Similarity NPC141455
0.8382 Intermediate Similarity NPC251062
0.8382 Intermediate Similarity NPC110063
0.8382 Intermediate Similarity NPC300894
0.8382 Intermediate Similarity NPC184464
0.8382 Intermediate Similarity NPC232228
0.8382 Intermediate Similarity NPC196063
0.8382 Intermediate Similarity NPC296954
0.8382 Intermediate Similarity NPC292443
0.8382 Intermediate Similarity NPC64195
0.8382 Intermediate Similarity NPC63304
0.837 Intermediate Similarity NPC296643
0.8346 Intermediate Similarity NPC233559
0.8346 Intermediate Similarity NPC124149
0.8333 Intermediate Similarity NPC287429
0.8333 Intermediate Similarity NPC55040
0.8321 Intermediate Similarity NPC34587
0.8321 Intermediate Similarity NPC262182
0.8321 Intermediate Similarity NPC476382
0.8321 Intermediate Similarity NPC476866
0.8321 Intermediate Similarity NPC475528
0.8321 Intermediate Similarity NPC100998
0.8321 Intermediate Similarity NPC216819
0.8321 Intermediate Similarity NPC34927
0.8321 Intermediate Similarity NPC252292
0.8321 Intermediate Similarity NPC476864
0.8321 Intermediate Similarity NPC83743
0.8321 Intermediate Similarity NPC287615
0.8321 Intermediate Similarity NPC476869
0.8321 Intermediate Similarity NPC476868
0.832 Intermediate Similarity NPC476142
0.8309 Intermediate Similarity NPC263397
0.8309 Intermediate Similarity NPC88754
0.8309 Intermediate Similarity NPC302286
0.8309 Intermediate Similarity NPC186296
0.8309 Intermediate Similarity NPC116104
0.8309 Intermediate Similarity NPC475213
0.8309 Intermediate Similarity NPC152796
0.8309 Intermediate Similarity NPC237872
0.8306 Intermediate Similarity NPC229600
0.8305 Intermediate Similarity NPC43584
0.8296 Intermediate Similarity NPC476442

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC11724 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.8702 High Similarity NPD7266 Discontinued
0.824 Intermediate Similarity NPD1091 Approved
0.8085 Intermediate Similarity NPD1653 Approved
0.7787 Intermediate Similarity NPD969 Suspended
0.775 Intermediate Similarity NPD1358 Approved
0.766 Intermediate Similarity NPD6190 Approved
0.7638 Intermediate Similarity NPD9545 Approved
0.7417 Intermediate Similarity NPD4381 Clinical (unspecified phase)
0.741 Intermediate Similarity NPD4978 Clinical (unspecified phase)
0.7394 Intermediate Similarity NPD1652 Phase 2
0.7377 Intermediate Similarity NPD3134 Approved
0.7273 Intermediate Similarity NPD422 Phase 1
0.7266 Intermediate Similarity NPD230 Phase 1
0.7222 Intermediate Similarity NPD4628 Phase 3
0.7219 Intermediate Similarity NPD8455 Phase 2
0.7176 Intermediate Similarity NPD1357 Approved
0.7143 Intermediate Similarity NPD4340 Discontinued
0.7101 Intermediate Similarity NPD3027 Phase 3
0.7081 Intermediate Similarity NPD7685 Pre-registration
0.7071 Intermediate Similarity NPD1613 Approved
0.7071 Intermediate Similarity NPD1612 Clinical (unspecified phase)
0.7042 Intermediate Similarity NPD7097 Phase 1
0.704 Intermediate Similarity NPD290 Approved
0.704 Intermediate Similarity NPD9265 Clinical (unspecified phase)
0.7037 Intermediate Similarity NPD4379 Clinical (unspecified phase)
0.7031 Intermediate Similarity NPD7843 Approved
0.7021 Intermediate Similarity NPD5124 Phase 1
0.7021 Intermediate Similarity NPD5123 Clinical (unspecified phase)
0.702 Intermediate Similarity NPD4380 Phase 2
0.7 Intermediate Similarity NPD6233 Phase 2
0.6992 Remote Similarity NPD5126 Approved
0.6992 Remote Similarity NPD5125 Phase 3
0.6984 Remote Similarity NPD2684 Approved
0.6983 Remote Similarity NPD689 Discontinued
0.6975 Remote Similarity NPD6559 Discontinued
0.6959 Remote Similarity NPD6143 Clinical (unspecified phase)
0.6947 Remote Similarity NPD694 Clinical (unspecified phase)
0.6947 Remote Similarity NPD9493 Approved
0.6937 Remote Similarity NPD3818 Discontinued
0.6933 Remote Similarity NPD4338 Clinical (unspecified phase)
0.6929 Remote Similarity NPD3764 Approved
0.6903 Remote Similarity NPD4868 Clinical (unspecified phase)
0.6894 Remote Similarity NPD7804 Clinical (unspecified phase)
0.6894 Remote Similarity NPD7054 Approved
0.6892 Remote Similarity NPD5058 Phase 3
0.6889 Remote Similarity NPD3705 Approved
0.6871 Remote Similarity NPD1878 Clinical (unspecified phase)
0.687 Remote Similarity NPD7157 Approved
0.6859 Remote Similarity NPD7075 Discontinued
0.6852 Remote Similarity NPD7472 Approved
0.6852 Remote Similarity NPD7074 Phase 3
0.6842 Remote Similarity NPD1548 Phase 1
0.6833 Remote Similarity NPD2933 Approved
0.6833 Remote Similarity NPD2934 Approved
0.6832 Remote Similarity NPD7228 Approved
0.6831 Remote Similarity NPD4060 Phase 1
0.6831 Remote Similarity NPD7966 Clinical (unspecified phase)
0.6829 Remote Similarity NPD1242 Phase 1
0.6825 Remote Similarity NPD968 Approved
0.6821 Remote Similarity NPD5403 Approved
0.6818 Remote Similarity NPD37 Approved
0.6815 Remote Similarity NPD6234 Discontinued
0.6815 Remote Similarity NPD3496 Discontinued
0.681 Remote Similarity NPD6797 Phase 2
0.6809 Remote Similarity NPD6859 Clinical (unspecified phase)
0.6809 Remote Similarity NPD6798 Discontinued
0.6795 Remote Similarity NPD4967 Phase 2
0.6795 Remote Similarity NPD4965 Approved
0.6795 Remote Similarity NPD4966 Approved
0.6788 Remote Similarity NPD8313 Approved
0.6788 Remote Similarity NPD8312 Approved
0.6786 Remote Similarity NPD1529 Clinical (unspecified phase)
0.6783 Remote Similarity NPD111 Approved
0.6777 Remote Similarity NPD2860 Approved
0.6777 Remote Similarity NPD2859 Approved
0.6774 Remote Similarity NPD940 Approved
0.6774 Remote Similarity NPD846 Approved
0.6768 Remote Similarity NPD7251 Discontinued
0.6765 Remote Similarity NPD1610 Phase 2
0.6765 Remote Similarity NPD1535 Discovery
0.6761 Remote Similarity NPD4062 Phase 3
0.6746 Remote Similarity NPD9697 Approved
0.6739 Remote Similarity NPD3225 Approved
0.6736 Remote Similarity NPD6653 Approved
0.6735 Remote Similarity NPD2424 Discontinued
0.6735 Remote Similarity NPD1549 Phase 2
0.6733 Remote Similarity NPD6799 Approved
0.6727 Remote Similarity NPD7808 Phase 3
0.6715 Remote Similarity NPD9269 Phase 2
0.6715 Remote Similarity NPD1481 Phase 2
0.6714 Remote Similarity NPD1530 Clinical (unspecified phase)
0.6714 Remote Similarity NPD2861 Phase 2
0.6712 Remote Similarity NPD1551 Phase 2
0.671 Remote Similarity NPD6801 Discontinued
0.6692 Remote Similarity NPD228 Approved
0.6691 Remote Similarity NPD1203 Approved
0.669 Remote Similarity NPD4538 Approved
0.669 Remote Similarity NPD4536 Approved
0.669 Remote Similarity NPD4537 Clinical (unspecified phase)
0.6689 Remote Similarity NPD6674 Discontinued
0.6689 Remote Similarity NPD5401 Approved
0.6689 Remote Similarity NPD7421 Clinical (unspecified phase)
0.6689 Remote Similarity NPD3536 Discontinued
0.6667 Remote Similarity NPD6355 Discontinued
0.6667 Remote Similarity NPD4908 Phase 1
0.6667 Remote Similarity NPD9380 Clinical (unspecified phase)
0.6667 Remote Similarity NPD1552 Clinical (unspecified phase)
0.6667 Remote Similarity NPD7096 Clinical (unspecified phase)
0.6667 Remote Similarity NPD1550 Clinical (unspecified phase)
0.6667 Remote Similarity NPD1282 Approved
0.6644 Remote Similarity NPD7033 Discontinued
0.6644 Remote Similarity NPD8166 Discontinued
0.6644 Remote Similarity NPD5960 Phase 3
0.6644 Remote Similarity NPD5588 Approved
0.6643 Remote Similarity NPD6007 Clinical (unspecified phase)
0.6643 Remote Similarity NPD5647 Approved
0.6642 Remote Similarity NPD5536 Phase 2
0.6641 Remote Similarity NPD5535 Approved
0.6624 Remote Similarity NPD5402 Approved
0.6618 Remote Similarity NPD1778 Approved
0.6618 Remote Similarity NPD4626 Approved
0.6613 Remote Similarity NPD3020 Approved
0.6608 Remote Similarity NPD7879 Clinical (unspecified phase)
0.6607 Remote Similarity NPD8055 Clinical (unspecified phase)
0.6601 Remote Similarity NPD6980 Clinical (unspecified phase)
0.6599 Remote Similarity NPD2935 Discontinued
0.6596 Remote Similarity NPD9494 Approved
0.6594 Remote Similarity NPD9717 Approved
0.6593 Remote Similarity NPD1894 Discontinued
0.6591 Remote Similarity NPD1241 Discontinued
0.6589 Remote Similarity NPD9266 Approved
0.6589 Remote Similarity NPD74 Approved
0.6579 Remote Similarity NPD8389 Clinical (unspecified phase)
0.6573 Remote Similarity NPD1048 Approved
0.6573 Remote Similarity NPD4907 Clinical (unspecified phase)
0.6571 Remote Similarity NPD3094 Phase 2
0.6569 Remote Similarity NPD3847 Discontinued
0.6557 Remote Similarity NPD1432 Clinical (unspecified phase)
0.6554 Remote Similarity NPD5763 Approved
0.6554 Remote Similarity NPD5762 Approved
0.6552 Remote Similarity NPD1933 Approved
0.6547 Remote Similarity NPD3685 Discontinued
0.6544 Remote Similarity NPD5691 Approved
0.6544 Remote Similarity NPD9268 Approved
0.6538 Remote Similarity NPD3021 Approved
0.6538 Remote Similarity NPD7411 Suspended
0.6538 Remote Similarity NPD3022 Approved
0.6536 Remote Similarity NPD7314 Clinical (unspecified phase)
0.6533 Remote Similarity NPD3750 Approved
0.6532 Remote Similarity NPD9495 Approved
0.6531 Remote Similarity NPD1510 Phase 2
0.6528 Remote Similarity NPD520 Approved
0.6522 Remote Similarity NPD7199 Phase 2
0.6516 Remote Similarity NPD3455 Phase 2
0.6516 Remote Similarity NPD7458 Discontinued
0.6512 Remote Similarity NPD9263 Approved
0.6512 Remote Similarity NPD9267 Approved
0.6512 Remote Similarity NPD9264 Approved
0.651 Remote Similarity NPD970 Clinical (unspecified phase)
0.6508 Remote Similarity NPD291 Approved
0.6506 Remote Similarity NPD7993 Clinical (unspecified phase)
0.6503 Remote Similarity NPD3179 Approved
0.6503 Remote Similarity NPD7095 Approved
0.6503 Remote Similarity NPD3180 Approved
0.65 Remote Similarity NPD8651 Approved
0.6497 Remote Similarity NPD1934 Approved
0.6496 Remote Similarity NPD5846 Approved
0.6496 Remote Similarity NPD9384 Approved
0.6496 Remote Similarity NPD5238 Clinical (unspecified phase)
0.6496 Remote Similarity NPD6516 Phase 2
0.6496 Remote Similarity NPD9381 Approved
0.6493 Remote Similarity NPD4198 Discontinued
0.6486 Remote Similarity NPD9570 Approved
0.6484 Remote Similarity NPD5048 Discontinued
0.6483 Remote Similarity NPD1240 Approved
0.6479 Remote Similarity NPD5736 Approved
0.6474 Remote Similarity NPD6599 Discontinued
0.6467 Remote Similarity NPD5698 Clinical (unspecified phase)
0.6467 Remote Similarity NPD7240 Approved
0.6457 Remote Similarity NPD6647 Phase 2
0.6456 Remote Similarity NPD2393 Clinical (unspecified phase)
0.6454 Remote Similarity NPD6362 Approved
0.6454 Remote Similarity NPD2797 Approved
0.6454 Remote Similarity NPD1049 Clinical (unspecified phase)
0.6452 Remote Similarity NPD3686 Approved
0.6452 Remote Similarity NPD3687 Approved
0.6446 Remote Similarity NPD9365 Approved
0.6443 Remote Similarity NPD2029 Clinical (unspecified phase)
0.6443 Remote Similarity NPD6006 Clinical (unspecified phase)
0.6443 Remote Similarity NPD6002 Phase 3
0.6443 Remote Similarity NPD6005 Phase 3
0.6443 Remote Similarity NPD6003 Clinical (unspecified phase)
0.6443 Remote Similarity NPD6004 Phase 3
0.6438 Remote Similarity NPD447 Suspended
0.6434 Remote Similarity NPD1008 Clinical (unspecified phase)
0.6434 Remote Similarity NPD6832 Phase 2
0.6429 Remote Similarity NPD2982 Phase 2
0.6429 Remote Similarity NPD2983 Phase 2
0.6424 Remote Similarity NPD3400 Discontinued
0.6424 Remote Similarity NPD3751 Discontinued

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data