Structure

Physi-Chem Properties

Molecular Weight:  204.19
Volume:  245.61
LogP:  4.59
LogD:  4.11
LogS:  -5.27
# Rotatable Bonds:  1
TPSA:  0.0
# H-Bond Aceptor:  0
# H-Bond Donor:  0
# Rings:  2
# Heavy Atoms:  0

MedChem Properties

QED Drug-Likeness Score:  0.579
Synthetic Accessibility Score:  4.195
Fsp3:  0.733
Lipinski Rule-of-5:  Accepted
Pfizer Rule:  Rejected
GSK Rule:  Rejected
BMS Rule:  0
Golden Triangle Rule:  Accepted
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -4.599
MDCK Permeability:  7.592877409479115e-06
Pgp-inhibitor:  0.151
Pgp-substrate:  0.002
Human Intestinal Absorption (HIA):  0.002
20% Bioavailability (F20%):  0.012
30% Bioavailability (F30%):  0.421

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.214
Plasma Protein Binding (PPB):  94.5244369506836%
Volume Distribution (VD):  2.787
Pgp-substrate:  3.224944591522217%

ADMET: Metabolism

CYP1A2-inhibitor:  0.452
CYP1A2-substrate:  0.751
CYP2C19-inhibitor:  0.531
CYP2C19-substrate:  0.888
CYP2C9-inhibitor:  0.527
CYP2C9-substrate:  0.128
CYP2D6-inhibitor:  0.373
CYP2D6-substrate:  0.198
CYP3A4-inhibitor:  0.726
CYP3A4-substrate:  0.562

ADMET: Excretion

Clearance (CL):  5.296
Half-life (T1/2):  0.186

ADMET: Toxicity

hERG Blockers:  0.184
Human Hepatotoxicity (H-HT):  0.651
Drug-inuced Liver Injury (DILI):  0.092
AMES Toxicity:  0.017
Rat Oral Acute Toxicity:  0.097
Maximum Recommended Daily Dose:  0.508
Skin Sensitization:  0.947
Carcinogencity:  0.711
Eye Corrosion:  0.848
Eye Irritation:  0.694
Respiratory Toxicity:  0.947

Download Data

Data Type Select
General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs  

  Natural Product: NPC10462

Natural Product ID:  NPC10462
Common Name*:   MBANDXQCQFFUAJ-UKRRQHHQSA-N
IUPAC Name:   n.a.
Synonyms:  
Standard InCHIKey:  MBANDXQCQFFUAJ-UKRRQHHQSA-N
Standard InCHI:  InChI=1S/C15H24/c1-11(2)13-7-9-15(4)8-5-6-12(3)14(15)10-13/h10-11,13H,3,5-9H2,1-2,4H3/t13-,15-/m1/s1
SMILES:  CC(C)[C@@H]1CC[C@@]2(C)CCCC(=C)C2=C1
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   n.a.
PubChem CID:   n.a.
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000012] Lipids and lipid-like molecules
      • [CHEMONTID:0000259] Prenol lipids
        • [CHEMONTID:0001550] Sesquiterpenoids
          • [CHEMONTID:0000101] Eudesmane, isoeudesmane or cycloeudesmane sesquiterpenoids

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO6401 Ligularia stenocephala Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO6401 Ligularia stenocephala Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO6622 Artemisia klotzchiana Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO6571 Ageratina viscosa Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9321 Lophozia attenuata Species Scapaniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11268 Pteris dispar Species Pteridaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1214 Litsea aurata Species Lauraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12537 Plantago psyllium Species Plantaginaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6401 Ligularia stenocephala Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6622 Artemisia klotzchiana Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9526 Gaillardia amblyodon Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10781 Erythrina bidwillii Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10629 Diospyros iturensis Species Ebenaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10044 Bombina maxima Species Bombinatoridae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9236 Helminthosporium velutinum Species Massarinaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11197 Coelogyne corymbosa Species Orchidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11565 Lobelia salicifolia Species Campanulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
☉ UNPD: Universal Natural Products Database [PMID: 23638153].
☉ StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
☉ TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
☉ TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
☉ TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
☉ TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
☉ HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
☉ MetaboLights: a metabolomics database [PMID: 27010336].
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
☉ DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
☉ PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC10462 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC10462 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
☉ A: chemistry similarity;
☉ B: biological targets similarity;
☉ C: networks similarity;
☉ D: cell-based bioactivity similarity;
☉ E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data