Natural Product: NPC48880

Natural Product ID:  NPC48880
Common Name:   Vatalbinoside A
IUPAC Name:  
Synonyms:  
Molecular Formula:   C62H52O17
Standard InCHIKey:  LUHKEQAQZMTBRZ-GTVYYROZSA-N
Standard InCHI:  InChI=1S/C62H52O17/c63-25-46-57(73)58(74)59(75)62(79-46)76-37-23-41-52-45(24-37)78-61(29-7-15-33(67)16-8-29)56(52)39-18-35(69)21-43(72)50(39)48(27-3-11-31(65)12-4-27)54(41)53-40-19-36(70)22-44-51(40)55(60(77-44)28-5-13-32(66)14-6-28)38-17-34(68)20-42(71)49(38)47(53)26-1-9-30(64)10-2-26/h1-24,46-48,53-75H,25H2/t46-,47-,48-,53-,54-,55-,56-,57-,58+,59-,60+,61+,62-/m1/s1
Canonical SMILES:  OC[C@H]1O[C@@H](Oc2cc3O[C@H]([C@H]4c3c(c2)[C@@H]([C@@H]2c3cc(O)cc5c3[C@@H](c3c([C@H]2c2ccc(cc2)O)c(O)cc(c3)O)[C@@H](O5)c2ccc(cc2)O)[C@H](c2ccc(cc2)O)c2c4cc(cc2O)O)c2ccc(cc2)O)[C@@H]([C@H]([C@@H]1O)O)O
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO7794 Vatica albiramis Species Dipterocarpaceae Eukaryota PMID[20735051]
NPO32500 anisoptera sp. Species NA NA Papua New Guinean rainforest PMID[25405587]

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT2 Others Unspecified IC50 = 4500 nM 19159272
NPT2 Others Unspecified IC50 = 12500 nM DrugMatrix in vitro pharmacology data

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC48880 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9474 High Similarity NPC233467
0.9221 High Similarity NPC59692
0.9145 High Similarity NPC224921
0.9145 High Similarity NPC242774
0.9145 High Similarity NPC231712
0.9145 High Similarity NPC237546
0.8938 High Similarity NPC1253
0.8938 High Similarity NPC100936
0.8896 High Similarity NPC111134
0.879 High Similarity NPC259707
0.8766 High Similarity NPC149633
0.8758 High Similarity NPC185231
0.8742 High Similarity NPC157333
0.8696 High Similarity NPC4809
0.8696 High Similarity NPC147743
0.8696 High Similarity NPC73517
0.8684 High Similarity NPC174787
0.8684 High Similarity NPC213607
0.8684 High Similarity NPC182509
0.8671 High Similarity NPC324517
0.8671 High Similarity NPC105073
0.8671 High Similarity NPC321972
0.8671 High Similarity NPC471403
0.8671 High Similarity NPC233886
0.8671 High Similarity NPC224528
0.8671 High Similarity NPC329343
0.8667 High Similarity NPC59516
0.8662 High Similarity NPC148516
0.8662 High Similarity NPC180605
0.8662 High Similarity NPC177172
0.8662 High Similarity NPC107862
0.8662 High Similarity NPC122980
0.8654 High Similarity NPC112819
0.8654 High Similarity NPC133209
0.8654 High Similarity NPC6702
0.8642 High Similarity NPC159526
0.8642 High Similarity NPC471404
0.8642 High Similarity NPC151474
0.8642 High Similarity NPC205613
0.8642 High Similarity NPC106601
0.8642 High Similarity NPC212614
0.8642 High Similarity NPC86630
0.8599 High Similarity NPC329836
0.859 High Similarity NPC102280
0.859 High Similarity NPC71686
0.859 High Similarity NPC176804
0.859 High Similarity NPC14468
0.859 High Similarity NPC248053
0.859 High Similarity NPC155564
0.8571 High Similarity NPC472353
0.8571 High Similarity NPC202104
0.8544 High Similarity NPC35877
0.8544 High Similarity NPC473266
0.8544 High Similarity NPC55715
0.8544 High Similarity NPC51328
0.8544 High Similarity NPC55158
0.8544 High Similarity NPC470098
0.8544 High Similarity NPC470826
0.8544 High Similarity NPC95392
0.8544 High Similarity NPC286235
0.8506 High Similarity NPC108674
0.85 High Similarity NPC322899
0.85 High Similarity NPC469944
0.85 High Similarity NPC44192
0.85 High Similarity NPC226809
0.85 High Similarity NPC279406
0.85 High Similarity NPC272552
0.85 High Similarity NPC134911
0.85 High Similarity NPC46283
0.85 High Similarity NPC226108
0.8491 Intermediate Similarity NPC218801
0.8491 Intermediate Similarity NPC238140
0.8481 Intermediate Similarity NPC280945
0.8481 Intermediate Similarity NPC20757
0.8481 Intermediate Similarity NPC130449
0.8481 Intermediate Similarity NPC304048
0.8481 Intermediate Similarity NPC226153
0.8481 Intermediate Similarity NPC248132
0.8481 Intermediate Similarity NPC227516
0.8471 Intermediate Similarity NPC241846
0.8471 Intermediate Similarity NPC93610
0.8462 Intermediate Similarity NPC15659
0.8462 Intermediate Similarity NPC304894
0.8447 Intermediate Similarity NPC20050
0.8447 Intermediate Similarity NPC306267
0.8447 Intermediate Similarity NPC224161
0.8438 Intermediate Similarity NPC473621
0.8438 Intermediate Similarity NPC157081
0.8424 Intermediate Similarity NPC149873
0.8424 Intermediate Similarity NPC7191
0.8421 Intermediate Similarity NPC11727
0.8421 Intermediate Similarity NPC15109
0.8418 Intermediate Similarity NPC328567
0.8418 Intermediate Similarity NPC39657
0.8418 Intermediate Similarity NPC320671
0.8418 Intermediate Similarity NPC327412
0.8418 Intermediate Similarity NPC320970
0.8397 Intermediate Similarity NPC163508
0.8397 Intermediate Similarity NPC173203
0.8395 Intermediate Similarity NPC46335
0.8387 Intermediate Similarity NPC257095
0.8387 Intermediate Similarity NPC277331
0.8387 Intermediate Similarity NPC273932
0.8387 Intermediate Similarity NPC210192
0.8387 Intermediate Similarity NPC89686
0.8387 Intermediate Similarity NPC100482
0.8385 Intermediate Similarity NPC120633
0.8385 Intermediate Similarity NPC476391
0.8385 Intermediate Similarity NPC21902
0.8385 Intermediate Similarity NPC473018
0.8375 Intermediate Similarity NPC472710
0.8375 Intermediate Similarity NPC214326
0.8375 Intermediate Similarity NPC9933
0.8375 Intermediate Similarity NPC475224
0.8375 Intermediate Similarity NPC225815
0.8375 Intermediate Similarity NPC218041
0.8375 Intermediate Similarity NPC472709
0.8375 Intermediate Similarity NPC260781
0.8375 Intermediate Similarity NPC477612
0.8375 Intermediate Similarity NPC182368
0.8375 Intermediate Similarity NPC469706
0.8375 Intermediate Similarity NPC145979
0.8375 Intermediate Similarity NPC185955
0.8375 Intermediate Similarity NPC469707
0.8365 Intermediate Similarity NPC270751
0.8354 Intermediate Similarity NPC205796
0.8354 Intermediate Similarity NPC276753
0.8354 Intermediate Similarity NPC317053
0.8354 Intermediate Similarity NPC324492
0.8344 Intermediate Similarity NPC225445
0.8344 Intermediate Similarity NPC138227
0.8344 Intermediate Similarity NPC168579
0.8344 Intermediate Similarity NPC469313
0.8344 Intermediate Similarity NPC151704
0.8344 Intermediate Similarity NPC76176
0.8313 Intermediate Similarity NPC476969
0.8313 Intermediate Similarity NPC295573
0.8313 Intermediate Similarity NPC321657
0.8313 Intermediate Similarity NPC318373
0.8313 Intermediate Similarity NPC470208
0.8312 Intermediate Similarity NPC87777
0.8312 Intermediate Similarity NPC262328
0.8302 Intermediate Similarity NPC153182
0.8302 Intermediate Similarity NPC58190
0.8302 Intermediate Similarity NPC262911
0.8302 Intermediate Similarity NPC294558
0.8302 Intermediate Similarity NPC263940
0.8302 Intermediate Similarity NPC204770
0.8302 Intermediate Similarity NPC18185
0.8302 Intermediate Similarity NPC70409
0.8302 Intermediate Similarity NPC174251
0.8302 Intermediate Similarity NPC15538
0.8302 Intermediate Similarity NPC108811
0.8302 Intermediate Similarity NPC202742
0.8302 Intermediate Similarity NPC473480
0.8302 Intermediate Similarity NPC170103
0.8302 Intermediate Similarity NPC236202
0.8302 Intermediate Similarity NPC82917
0.8291 Intermediate Similarity NPC11422
0.8291 Intermediate Similarity NPC178014
0.8291 Intermediate Similarity NPC22150
0.8291 Intermediate Similarity NPC38041
0.8291 Intermediate Similarity NPC271076
0.8291 Intermediate Similarity NPC279298
0.8291 Intermediate Similarity NPC474749
0.8291 Intermediate Similarity NPC23807
0.8291 Intermediate Similarity NPC475096
0.8291 Intermediate Similarity NPC42716
0.828 Intermediate Similarity NPC37793
0.828 Intermediate Similarity NPC116922
0.8272 Intermediate Similarity NPC474442
0.8269 Intermediate Similarity NPC178054
0.8263 Intermediate Similarity NPC12326
0.8261 Intermediate Similarity NPC98624
0.825 Intermediate Similarity NPC301961
0.825 Intermediate Similarity NPC166584
0.8247 Intermediate Similarity NPC138350
0.8247 Intermediate Similarity NPC197723
0.8247 Intermediate Similarity NPC165482
0.8247 Intermediate Similarity NPC3293
0.8247 Intermediate Similarity NPC141717
0.8247 Intermediate Similarity NPC40664
0.8239 Intermediate Similarity NPC190714
0.8239 Intermediate Similarity NPC96576
0.8239 Intermediate Similarity NPC215678
0.8239 Intermediate Similarity NPC99515
0.8239 Intermediate Similarity NPC226540
0.8239 Intermediate Similarity NPC112861
0.8239 Intermediate Similarity NPC274454
0.8239 Intermediate Similarity NPC125755
0.8235 Intermediate Similarity NPC130496
0.8235 Intermediate Similarity NPC188555
0.8228 Intermediate Similarity NPC472712
0.8228 Intermediate Similarity NPC114119
0.8228 Intermediate Similarity NPC471063
0.8228 Intermediate Similarity NPC28440
0.8228 Intermediate Similarity NPC475492
0.8228 Intermediate Similarity NPC473046
0.8228 Intermediate Similarity NPC470097
0.8228 Intermediate Similarity NPC187774

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC48880 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.807 Intermediate Similarity NPD7228 Approved
0.7952 Intermediate Similarity NPD8455 Phase 2
0.7843 Intermediate Similarity NPD4908 Phase 1
0.7797 Intermediate Similarity NPD8312 Approved
0.7797 Intermediate Similarity NPD8313 Approved
0.7784 Intermediate Similarity NPD7240 Approved
0.7778 Intermediate Similarity NPD7199 Phase 2
0.7765 Intermediate Similarity NPD6234 Discontinued
0.7756 Intermediate Similarity NPD1613 Approved
0.7756 Intermediate Similarity NPD1612 Clinical (unspecified phase)
0.7751 Intermediate Similarity NPD4965 Approved
0.7751 Intermediate Similarity NPD4966 Approved
0.7751 Intermediate Similarity NPD4967 Phase 2
0.7742 Intermediate Similarity NPD4907 Clinical (unspecified phase)
0.7702 Intermediate Similarity NPD6674 Discontinued
0.7586 Intermediate Similarity NPD7184 Clinical (unspecified phase)
0.7574 Intermediate Similarity NPD37 Approved
0.75 Intermediate Similarity NPD1529 Clinical (unspecified phase)
0.75 Intermediate Similarity NPD1091 Approved
0.75 Intermediate Similarity NPD4381 Clinical (unspecified phase)
0.75 Intermediate Similarity NPD1610 Phase 2
0.7472 Intermediate Similarity NPD7472 Approved
0.7472 Intermediate Similarity NPD7074 Phase 3
0.7444 Intermediate Similarity NPD7808 Phase 3
0.744 Intermediate Similarity NPD1653 Approved
0.7436 Intermediate Similarity NPD1530 Clinical (unspecified phase)
0.7436 Intermediate Similarity NPD2861 Phase 2
0.743 Intermediate Similarity NPD7993 Clinical (unspecified phase)
0.7416 Intermediate Similarity NPD7054 Approved
0.7416 Intermediate Similarity NPD7804 Clinical (unspecified phase)
0.7389 Intermediate Similarity NPD6559 Discontinued
0.7389 Intermediate Similarity NPD7251 Discontinued
0.7382 Intermediate Similarity NPD7680 Approved
0.736 Intermediate Similarity NPD3818 Discontinued
0.7342 Intermediate Similarity NPD3027 Phase 3
0.7333 Intermediate Similarity NPD6797 Phase 2
0.733 Intermediate Similarity NPD3787 Discontinued
0.7263 Intermediate Similarity NPD7237 Clinical (unspecified phase)
0.7241 Intermediate Similarity NPD4868 Clinical (unspecified phase)
0.7233 Intermediate Similarity NPD4625 Phase 3
0.7188 Intermediate Similarity NPD6410 Clinical (unspecified phase)
0.7175 Intermediate Similarity NPD6959 Discontinued
0.7169 Intermediate Similarity NPD5698 Clinical (unspecified phase)
0.7152 Intermediate Similarity NPD7266 Discontinued
0.7151 Intermediate Similarity NPD6166 Phase 2
0.7151 Intermediate Similarity NPD6167 Clinical (unspecified phase)
0.7151 Intermediate Similarity NPD6168 Clinical (unspecified phase)
0.7135 Intermediate Similarity NPD8055 Clinical (unspecified phase)
0.7128 Intermediate Similarity NPD7879 Clinical (unspecified phase)
0.7124 Intermediate Similarity NPD1548 Phase 1
0.7099 Intermediate Similarity NPD4060 Phase 1
0.7086 Intermediate Similarity NPD8443 Clinical (unspecified phase)
0.7073 Intermediate Similarity NPD7097 Phase 1
0.7072 Intermediate Similarity NPD3751 Discontinued
0.707 Intermediate Similarity NPD4749 Approved
0.7065 Intermediate Similarity NPD4338 Clinical (unspecified phase)
0.7059 Intermediate Similarity NPD7447 Phase 1
0.7059 Intermediate Similarity NPD7004 Clinical (unspecified phase)
0.7055 Intermediate Similarity NPD5735 Approved
0.7041 Intermediate Similarity NPD5058 Phase 3
0.7033 Intermediate Similarity NPD5844 Phase 1
0.702 Intermediate Similarity NPD8151 Discontinued
0.7 Intermediate Similarity NPD7212 Phase 2
0.7 Intermediate Similarity NPD7213 Phase 3
0.6989 Remote Similarity NPD8053 Approved
0.6989 Remote Similarity NPD8054 Approved
0.6968 Remote Similarity NPD6841 Approved
0.6968 Remote Similarity NPD6842 Approved
0.6968 Remote Similarity NPD6843 Phase 3
0.6954 Remote Similarity NPD4380 Phase 2
0.6949 Remote Similarity NPD7768 Phase 2
0.6946 Remote Similarity NPD5762 Approved
0.6946 Remote Similarity NPD5763 Approved
0.6944 Remote Similarity NPD7229 Phase 3
0.6943 Remote Similarity NPD3705 Approved
0.6932 Remote Similarity NPD7819 Suspended
0.6931 Remote Similarity NPD8397 Clinical (unspecified phase)
0.6923 Remote Similarity NPD7466 Approved
0.6923 Remote Similarity NPD3892 Phase 2
0.6898 Remote Similarity NPD7090 Clinical (unspecified phase)
0.6875 Remote Similarity NPD1934 Approved
0.6868 Remote Similarity NPD7852 Clinical (unspecified phase)
0.6848 Remote Similarity NPD5123 Clinical (unspecified phase)
0.6848 Remote Similarity NPD5124 Phase 1
0.6836 Remote Similarity NPD2393 Clinical (unspecified phase)
0.6832 Remote Similarity NPD6917 Clinical (unspecified phase)
0.6826 Remote Similarity NPD5588 Approved
0.6824 Remote Similarity NPD3750 Approved
0.6818 Remote Similarity NPD7870 Phase 2
0.6818 Remote Similarity NPD7871 Phase 2
0.6816 Remote Similarity NPD7975 Clinical (unspecified phase)
0.6816 Remote Similarity NPD3749 Approved
0.6816 Remote Similarity NPD7075 Discontinued
0.6815 Remote Similarity NPD5125 Phase 3
0.6815 Remote Similarity NPD5126 Approved
0.6813 Remote Similarity NPD8651 Approved
0.6805 Remote Similarity NPD7037 Approved
0.6802 Remote Similarity NPD6143 Clinical (unspecified phase)
0.6786 Remote Similarity NPD6099 Approved
0.6786 Remote Similarity NPD6100 Approved
0.6782 Remote Similarity NPD7782 Clinical (unspecified phase)
0.6782 Remote Similarity NPD7783 Phase 2
0.6768 Remote Similarity NPD6859 Clinical (unspecified phase)
0.6766 Remote Similarity NPD7119 Phase 2
0.6765 Remote Similarity NPD1652 Phase 2
0.6763 Remote Similarity NPD7446 Clinical (unspecified phase)
0.6757 Remote Similarity NPD8156 Discontinued
0.6747 Remote Similarity NPD6355 Discontinued
0.6742 Remote Similarity NPD1465 Phase 2
0.6739 Remote Similarity NPD7473 Discontinued
0.6738 Remote Similarity NPD7685 Pre-registration
0.6732 Remote Similarity NPD7843 Approved
0.6726 Remote Similarity NPD4108 Discontinued
0.6717 Remote Similarity NPD6823 Phase 2
0.671 Remote Similarity NPD7157 Approved
0.6705 Remote Similarity NPD5808 Clinical (unspecified phase)
0.6705 Remote Similarity NPD7041 Phase 2
0.6705 Remote Similarity NPD7040 Clinical (unspecified phase)
0.6704 Remote Similarity NPD5402 Approved
0.6703 Remote Similarity NPD8251 Approved
0.6703 Remote Similarity NPD8099 Discontinued
0.6703 Remote Similarity NPD8127 Discontinued
0.6703 Remote Similarity NPD8252 Approved
0.6702 Remote Similarity NPD7549 Discontinued
0.6702 Remote Similarity NPD7906 Approved
0.6701 Remote Similarity NPD6777 Approved
0.6701 Remote Similarity NPD6781 Approved
0.6701 Remote Similarity NPD6779 Approved
0.6701 Remote Similarity NPD6780 Approved
0.6701 Remote Similarity NPD6778 Approved
0.6701 Remote Similarity NPD6782 Approved
0.6701 Remote Similarity NPD6776 Approved
0.6687 Remote Similarity NPD3619 Clinical (unspecified phase)
0.6687 Remote Similarity NPD4140 Approved
0.6687 Remote Similarity NPD3620 Phase 2
0.6686 Remote Similarity NPD6980 Clinical (unspecified phase)
0.6683 Remote Similarity NPD7698 Approved
0.6683 Remote Similarity NPD7435 Discontinued
0.6683 Remote Similarity NPD7697 Approved
0.6683 Remote Similarity NPD7696 Phase 3
0.6667 Remote Similarity NPD4537 Clinical (unspecified phase)
0.6667 Remote Similarity NPD4160 Clinical (unspecified phase)
0.6667 Remote Similarity NPD6232 Discontinued
0.6667 Remote Similarity NPD4536 Approved
0.6667 Remote Similarity NPD6798 Discontinued
0.6667 Remote Similarity NPD4538 Approved
0.6649 Remote Similarity NPD4663 Approved
0.6648 Remote Similarity NPD5494 Approved
0.6648 Remote Similarity NPD7096 Clinical (unspecified phase)
0.6647 Remote Similarity NPD1550 Clinical (unspecified phase)
0.6647 Remote Similarity NPD1552 Clinical (unspecified phase)
0.6646 Remote Similarity NPD3600 Clinical (unspecified phase)
0.6646 Remote Similarity NPD5327 Phase 3
0.6634 Remote Similarity NPD7701 Phase 2
0.6629 Remote Similarity NPD7615 Clinical (unspecified phase)
0.6629 Remote Similarity NPD7411 Suspended
0.6628 Remote Similarity NPD6398 Clinical (unspecified phase)
0.6627 Remote Similarity NPD5960 Phase 3
0.6618 Remote Similarity NPD7801 Approved
0.6614 Remote Similarity NPD8453 Clinical (unspecified phase)
0.661 Remote Similarity NPD7458 Discontinued
0.661 Remote Similarity NPD8158 Clinical (unspecified phase)
0.6608 Remote Similarity NPD1549 Phase 2
0.6607 Remote Similarity NPD6353 Approved
0.6606 Remote Similarity NPD7095 Approved
0.6605 Remote Similarity NPD6696 Suspended
0.6604 Remote Similarity NPD5846 Approved
0.6604 Remote Similarity NPD6516 Phase 2
0.6603 Remote Similarity NPD6671 Approved
0.6591 Remote Similarity NPD5403 Approved
0.659 Remote Similarity NPD2677 Approved
0.659 Remote Similarity NPD5084 Clinical (unspecified phase)
0.6585 Remote Similarity NPD3018 Phase 2
0.6579 Remote Similarity NPD7312 Approved
0.6579 Remote Similarity NPD7311 Approved
0.6579 Remote Similarity NPD7310 Approved
0.6579 Remote Similarity NPD7313 Approved
0.6579 Remote Similarity NPD4577 Approved
0.6579 Remote Similarity NPD4578 Approved
0.6576 Remote Similarity NPD3051 Approved
0.6575 Remote Similarity NPD3882 Suspended
0.6569 Remote Similarity NPD7874 Approved
0.6569 Remote Similarity NPD7875 Clinical (unspecified phase)
0.6568 Remote Similarity NPD4978 Clinical (unspecified phase)
0.6564 Remote Similarity NPD3094 Phase 2
0.6556 Remote Similarity NPD2801 Approved
0.655 Remote Similarity NPD2029 Clinical (unspecified phase)
0.6545 Remote Similarity NPD7309 Approved
0.6541 Remote Similarity NPD2970 Approved
0.6541 Remote Similarity NPD1357 Approved
0.6541 Remote Similarity NPD2969 Approved
0.6529 Remote Similarity NPD3748 Approved
0.6527 Remote Similarity NPD6233 Phase 2
0.6524 Remote Similarity NPD6584 Phase 3
0.6522 Remote Similarity NPD422 Phase 1
0.6519 Remote Similarity NPD3817 Phase 2
0.6519 Remote Similarity NPD6374 Clinical (unspecified phase)
0.6515 Remote Similarity NPD7699 Phase 2
0.6515 Remote Similarity NPD7700 Phase 2
0.6514 Remote Similarity NPD1511 Approved

Structure

External Identifiers

PubChem CID   46938651
ChEMBL   CHEMBL1224869
ZINC  

Physicochemical Properties

Molecular Weight:  1068.32
ALogP:  -7.2855
MLogP:  6.41
XLogP:  7.01
# Rotatable Bonds:  21
Polar Surface Area:  299.91
# H-Bond Aceptor:  5
# H-Bond Donor:  13
# Rings:  13
# Heavy Atoms:  79

Download Data

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General Info & Identifiers & Properties  
Structure MOL file  
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Biological Activities  
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