Natural Product: NPC474843

Natural Product ID:  NPC474843
Common Name:   Hyperxanthone D
IUPAC Name:   2,6,8-trihydroxy-1-(2-hydroxy-3-methylbut-3-enyl)xanthen-9-one
Synonyms:   Hyperxanthone D
Molecular Formula:   C18H16O6
Standard InCHIKey:  YBIZIJLYKSWSGG-UHFFFAOYSA-N
Standard InCHI:  InChI=1S/C18H16O6/c1-8(2)12(21)7-10-11(20)3-4-14-16(10)18(23)17-13(22)5-9(19)6-15(17)24-14/h3-6,12,19-22H,1,7H2,2H3
Canonical SMILES:  Oc1cc(O)c2c(c1)oc1c(c2=O)c(CC(C(=C)C)O)c(cc1)O
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO11713 Hypericum scabrum Species Hypericaceae Eukaryota Uzbekistan PMID[15568778]

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT81 Cell Line A549 Homo sapiens Inhibition = 43 % 20795741
NPT81 Cell Line A549 Homo sapiens IC50 > 20000 ug/ml 18303847
NPT83 Cell Line MCF7 Homo sapiens Inhibition = 34 % 19902967
NPT83 Cell Line MCF7 Homo sapiens IC50 > 20000 ug/ml DrugMatrix in vitro pharmacology data

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC474843 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9592 High Similarity NPC227122
0.9536 High Similarity NPC329091
0.953 High Similarity NPC135522
0.9459 High Similarity NPC37348
0.9408 High Similarity NPC186113
0.94 High Similarity NPC280530
0.94 High Similarity NPC178964
0.94 High Similarity NPC95842
0.9392 High Similarity NPC266499
0.9384 High Similarity NPC311144
0.9379 High Similarity NPC310340
0.9379 High Similarity NPC73028
0.9338 High Similarity NPC37392
0.9338 High Similarity NPC67396
0.9329 High Similarity NPC202595
0.9324 High Similarity NPC106328
0.9324 High Similarity NPC186397
0.9324 High Similarity NPC35150
0.9324 High Similarity NPC37135
0.932 High Similarity NPC24136
0.932 High Similarity NPC472629
0.932 High Similarity NPC187282
0.932 High Similarity NPC299011
0.932 High Similarity NPC290133
0.9315 High Similarity NPC113770
0.9286 High Similarity NPC474186
0.9286 High Similarity NPC96031
0.9286 High Similarity NPC474187
0.9276 High Similarity NPC24640
0.9272 High Similarity NPC89474
0.9267 High Similarity NPC232645
0.9267 High Similarity NPC72958
0.9262 High Similarity NPC223988
0.9257 High Similarity NPC308200
0.9252 High Similarity NPC303185
0.9252 High Similarity NPC124780
0.9252 High Similarity NPC87486
0.9252 High Similarity NPC470890
0.9252 High Similarity NPC184649
0.9247 High Similarity NPC169479
0.9247 High Similarity NPC159855
0.9241 High Similarity NPC275734
0.9241 High Similarity NPC110228
0.9241 High Similarity NPC188243
0.9241 High Similarity NPC182421
0.9241 High Similarity NPC6407
0.9236 High Similarity NPC225419
0.9226 High Similarity NPC472402
0.9226 High Similarity NPC473961
0.9221 High Similarity NPC475886
0.9221 High Similarity NPC321399
0.9221 High Similarity NPC471976
0.9221 High Similarity NPC474287
0.9216 High Similarity NPC196448
0.9216 High Similarity NPC475267
0.9216 High Similarity NPC300727
0.9216 High Similarity NPC474836
0.9216 High Similarity NPC241904
0.9216 High Similarity NPC474208
0.9216 High Similarity NPC48208
0.9216 High Similarity NPC181960
0.9216 High Similarity NPC156057
0.9216 High Similarity NPC162869
0.9216 High Similarity NPC477833
0.9216 High Similarity NPC165977
0.9216 High Similarity NPC217677
0.9211 High Similarity NPC166054
0.9211 High Similarity NPC472909
0.9211 High Similarity NPC55662
0.9205 High Similarity NPC281272
0.9205 High Similarity NPC87708
0.92 High Similarity NPC472633
0.92 High Similarity NPC470107
0.9195 High Similarity NPC39195
0.9195 High Similarity NPC145467
0.9189 High Similarity NPC469758
0.9178 High Similarity NPC49108
0.9172 High Similarity NPC265871
0.9172 High Similarity NPC329203
0.9172 High Similarity NPC150648
0.9172 High Similarity NPC225153
0.9172 High Similarity NPC274784
0.9172 High Similarity NPC222342
0.9172 High Similarity NPC310135
0.9172 High Similarity NPC20709
0.9172 High Similarity NPC140890
0.9167 High Similarity NPC475985
0.9167 High Similarity NPC197168
0.9167 High Similarity NPC7483
0.9161 High Similarity NPC475883
0.9161 High Similarity NPC3629
0.9161 High Similarity NPC474351
0.9161 High Similarity NPC32694
0.9156 High Similarity NPC210459
0.9156 High Similarity NPC476242
0.915 High Similarity NPC235165
0.915 High Similarity NPC255106
0.915 High Similarity NPC142339
0.915 High Similarity NPC164427
0.915 High Similarity NPC274730
0.9145 High Similarity NPC472915
0.9139 High Similarity NPC202157
0.9139 High Similarity NPC473131
0.9139 High Similarity NPC117579
0.9139 High Similarity NPC470675
0.9139 High Similarity NPC204515
0.9133 High Similarity NPC10027
0.9133 High Similarity NPC471114
0.9133 High Similarity NPC65775
0.9128 High Similarity NPC10990
0.9128 High Similarity NPC300988
0.9128 High Similarity NPC259632
0.9128 High Similarity NPC71055
0.9122 High Similarity NPC469764
0.9122 High Similarity NPC224714
0.9122 High Similarity NPC271288
0.9116 High Similarity NPC66515
0.9116 High Similarity NPC107572
0.9116 High Similarity NPC37496
0.9116 High Similarity NPC78
0.9116 High Similarity NPC166482
0.9116 High Similarity NPC306829
0.9116 High Similarity NPC161506
0.9116 High Similarity NPC40833
0.9116 High Similarity NPC76338
0.9116 High Similarity NPC177354
0.9116 High Similarity NPC202981
0.9116 High Similarity NPC125855
0.9116 High Similarity NPC167624
0.9116 High Similarity NPC166934
0.9116 High Similarity NPC194432
0.9116 High Similarity NPC148757
0.9116 High Similarity NPC265040
0.9116 High Similarity NPC1089
0.9116 High Similarity NPC328164
0.9116 High Similarity NPC228504
0.9116 High Similarity NPC10937
0.9116 High Similarity NPC220998
0.9116 High Similarity NPC32739
0.9116 High Similarity NPC227579
0.9116 High Similarity NPC296917
0.9116 High Similarity NPC76372
0.9116 High Similarity NPC324436
0.9116 High Similarity NPC64915
0.9116 High Similarity NPC223500
0.9116 High Similarity NPC324134
0.9116 High Similarity NPC182852
0.9114 High Similarity NPC117854
0.9114 High Similarity NPC477154
0.9114 High Similarity NPC6588
0.911 High Similarity NPC129853
0.911 High Similarity NPC145673
0.911 High Similarity NPC76445
0.911 High Similarity NPC284550
0.9108 High Similarity NPC25361
0.9108 High Similarity NPC473286
0.9108 High Similarity NPC326520
0.9103 High Similarity NPC229632
0.9103 High Similarity NPC472964
0.9097 High Similarity NPC14353
0.9097 High Similarity NPC472902
0.9097 High Similarity NPC45146
0.9097 High Similarity NPC228785
0.9097 High Similarity NPC299436
0.9097 High Similarity NPC235018
0.9097 High Similarity NPC263449
0.9097 High Similarity NPC36217
0.9097 High Similarity NPC56085
0.9091 High Similarity NPC470402
0.9091 High Similarity NPC210084
0.9091 High Similarity NPC472914
0.9091 High Similarity NPC99597
0.9091 High Similarity NPC236796
0.9091 High Similarity NPC245758
0.9091 High Similarity NPC472911
0.9091 High Similarity NPC44199
0.9091 High Similarity NPC472910
0.9091 High Similarity NPC469584
0.9091 High Similarity NPC96167
0.9091 High Similarity NPC222814
0.9091 High Similarity NPC472913
0.9085 High Similarity NPC31018
0.9085 High Similarity NPC175192
0.9085 High Similarity NPC321779
0.9085 High Similarity NPC255807
0.9079 High Similarity NPC154683
0.9079 High Similarity NPC207624
0.9079 High Similarity NPC40356
0.9073 High Similarity NPC338131
0.9073 High Similarity NPC101957
0.9073 High Similarity NPC120105
0.9073 High Similarity NPC29777
0.9073 High Similarity NPC295036
0.9073 High Similarity NPC62042
0.9073 High Similarity NPC471115
0.9067 High Similarity NPC218569
0.906 High Similarity NPC196114
0.9054 High Similarity NPC175504
0.9054 High Similarity NPC150408
0.9054 High Similarity NPC85162

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC474843 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.9034 High Similarity NPD1552 Clinical (unspecified phase)
0.9034 High Similarity NPD1550 Clinical (unspecified phase)
0.902 High Similarity NPD2393 Clinical (unspecified phase)
0.8973 High Similarity NPD1549 Phase 2
0.8954 High Similarity NPD1934 Approved
0.8896 High Similarity NPD7819 Suspended
0.8896 High Similarity NPD2801 Approved
0.8867 High Similarity NPD4378 Clinical (unspecified phase)
0.8797 High Similarity NPD6959 Discontinued
0.8718 High Similarity NPD8443 Clinical (unspecified phase)
0.8707 High Similarity NPD2796 Approved
0.8701 High Similarity NPD4380 Phase 2
0.8639 High Similarity NPD1510 Phase 2
0.8634 High Similarity NPD6166 Phase 2
0.8634 High Similarity NPD6167 Clinical (unspecified phase)
0.8634 High Similarity NPD6168 Clinical (unspecified phase)
0.8616 High Similarity NPD5494 Approved
0.8608 High Similarity NPD4381 Clinical (unspecified phase)
0.8553 High Similarity NPD1511 Approved
0.8493 Intermediate Similarity NPD1240 Approved
0.8491 Intermediate Similarity NPD7075 Discontinued
0.8476 Intermediate Similarity NPD5844 Phase 1
0.8467 Intermediate Similarity NPD970 Clinical (unspecified phase)
0.8442 Intermediate Similarity NPD1512 Approved
0.8428 Intermediate Similarity NPD3882 Suspended
0.8424 Intermediate Similarity NPD7074 Phase 3
0.8418 Intermediate Similarity NPD7096 Clinical (unspecified phase)
0.8415 Intermediate Similarity NPD3818 Discontinued
0.8408 Intermediate Similarity NPD7411 Suspended
0.8383 Intermediate Similarity NPD4338 Clinical (unspecified phase)
0.8378 Intermediate Similarity NPD1607 Approved
0.8377 Intermediate Similarity NPD2532 Approved
0.8377 Intermediate Similarity NPD7410 Clinical (unspecified phase)
0.8377 Intermediate Similarity NPD2534 Approved
0.8377 Intermediate Similarity NPD2533 Approved
0.8375 Intermediate Similarity NPD3749 Approved
0.8365 Intermediate Similarity NPD5402 Approved
0.8364 Intermediate Similarity NPD7054 Approved
0.8355 Intermediate Similarity NPD3750 Approved
0.8313 Intermediate Similarity NPD7472 Approved
0.8313 Intermediate Similarity NPD4868 Clinical (unspecified phase)
0.8282 Intermediate Similarity NPD6232 Discontinued
0.8263 Intermediate Similarity NPD6797 Phase 2
0.8253 Intermediate Similarity NPD7804 Clinical (unspecified phase)
0.825 Intermediate Similarity NPD3817 Phase 2
0.8242 Intermediate Similarity NPD7473 Discontinued
0.8239 Intermediate Similarity NPD6801 Discontinued
0.8214 Intermediate Similarity NPD7251 Discontinued
0.8212 Intermediate Similarity NPD2935 Discontinued
0.8194 Intermediate Similarity NPD6799 Approved
0.8182 Intermediate Similarity NPD7852 Clinical (unspecified phase)
0.817 Intermediate Similarity NPD2800 Approved
0.8166 Intermediate Similarity NPD7808 Phase 3
0.8113 Intermediate Similarity NPD6599 Discontinued
0.8107 Intermediate Similarity NPD6559 Discontinued
0.8092 Intermediate Similarity NPD6100 Approved
0.8092 Intermediate Similarity NPD6099 Approved
0.8086 Intermediate Similarity NPD7768 Phase 2
0.805 Intermediate Similarity NPD3226 Approved
0.8039 Intermediate Similarity NPD2346 Discontinued
0.8026 Intermediate Similarity NPD1509 Clinical (unspecified phase)
0.8026 Intermediate Similarity NPD3748 Approved
0.8 Intermediate Similarity NPD7879 Clinical (unspecified phase)
0.7987 Intermediate Similarity NPD6859 Clinical (unspecified phase)
0.7976 Intermediate Similarity NPD3751 Discontinued
0.7974 Intermediate Similarity NPD1551 Phase 2
0.7963 Intermediate Similarity NPD1465 Phase 2
0.7952 Intermediate Similarity NPD3787 Discontinued
0.7941 Intermediate Similarity NPD7993 Clinical (unspecified phase)
0.7935 Intermediate Similarity NPD7421 Clinical (unspecified phase)
0.7925 Intermediate Similarity NPD5403 Approved
0.7922 Intermediate Similarity NPD2344 Approved
0.7885 Intermediate Similarity NPD1878 Clinical (unspecified phase)
0.7885 Intermediate Similarity NPD4628 Phase 3
0.7852 Intermediate Similarity NPD4908 Phase 1
0.7849 Intermediate Similarity NPD4419 Clinical (unspecified phase)
0.7848 Intermediate Similarity NPD7390 Discontinued
0.7844 Intermediate Similarity NPD5710 Approved
0.7844 Intermediate Similarity NPD5711 Approved
0.7812 Intermediate Similarity NPD920 Approved
0.7799 Intermediate Similarity NPD7004 Clinical (unspecified phase)
0.7799 Intermediate Similarity NPD5401 Approved
0.7792 Intermediate Similarity NPD2799 Discontinued
0.7791 Intermediate Similarity NPD6844 Discontinued
0.7785 Intermediate Similarity NPD2861 Phase 2
0.7784 Intermediate Similarity NPD1247 Approved
0.7763 Intermediate Similarity NPD1613 Approved
0.7763 Intermediate Similarity NPD943 Approved
0.7763 Intermediate Similarity NPD1612 Clinical (unspecified phase)
0.7748 Intermediate Similarity NPD4907 Clinical (unspecified phase)
0.774 Intermediate Similarity NPD1610 Phase 2
0.774 Intermediate Similarity NPD1547 Clinical (unspecified phase)
0.7733 Intermediate Similarity NPD5953 Discontinued
0.7722 Intermediate Similarity NPD2309 Approved
0.7719 Intermediate Similarity NPD7286 Phase 2
0.7716 Intermediate Similarity NPD5808 Clinical (unspecified phase)
0.7709 Intermediate Similarity NPD4363 Phase 3
0.7709 Intermediate Similarity NPD4360 Phase 2
0.7701 Intermediate Similarity NPD8312 Approved
0.7701 Intermediate Similarity NPD8313 Approved
0.7692 Intermediate Similarity NPD6782 Approved
0.7692 Intermediate Similarity NPD6778 Approved
0.7692 Intermediate Similarity NPD6779 Approved
0.7692 Intermediate Similarity NPD6776 Approved
0.7692 Intermediate Similarity NPD3926 Phase 2
0.7692 Intermediate Similarity NPD6777 Approved
0.7692 Intermediate Similarity NPD6780 Approved
0.7692 Intermediate Similarity NPD6781 Approved
0.7688 Intermediate Similarity NPD642 Clinical (unspecified phase)
0.7682 Intermediate Similarity NPD4625 Phase 3
0.7677 Intermediate Similarity NPD7033 Discontinued
0.7662 Intermediate Similarity NPD6651 Approved
0.7658 Intermediate Similarity NPD6398 Clinical (unspecified phase)
0.7633 Intermediate Similarity NPD7229 Phase 3
0.7632 Intermediate Similarity NPD2313 Discontinued
0.7596 Intermediate Similarity NPD7501 Clinical (unspecified phase)
0.7595 Intermediate Similarity NPD1243 Approved
0.7584 Intermediate Similarity NPD8397 Clinical (unspecified phase)
0.7576 Intermediate Similarity NPD37 Approved
0.7574 Intermediate Similarity NPD7199 Phase 2
0.7568 Intermediate Similarity NPD7698 Approved
0.7568 Intermediate Similarity NPD7696 Phase 3
0.7568 Intermediate Similarity NPD7697 Approved
0.7568 Intermediate Similarity NPD7435 Discontinued
0.7564 Intermediate Similarity NPD651 Clinical (unspecified phase)
0.7562 Intermediate Similarity NPD643 Clinical (unspecified phase)
0.7545 Intermediate Similarity NPD4965 Approved
0.7545 Intermediate Similarity NPD4966 Approved
0.7545 Intermediate Similarity NPD4967 Phase 2
0.7533 Intermediate Similarity NPD1470 Approved
0.7533 Intermediate Similarity NPD1203 Approved
0.7527 Intermediate Similarity NPD7871 Phase 2
0.7527 Intermediate Similarity NPD7870 Phase 2
0.7516 Intermediate Similarity NPD3268 Approved
0.7515 Intermediate Similarity NPD7615 Clinical (unspecified phase)
0.75 Intermediate Similarity NPD1529 Clinical (unspecified phase)
0.75 Intermediate Similarity NPD1201 Approved
0.75 Intermediate Similarity NPD6832 Phase 2
0.7484 Intermediate Similarity NPD230 Phase 1
0.7484 Intermediate Similarity NPD1899 Clinical (unspecified phase)
0.7483 Intermediate Similarity NPD2798 Approved
0.7474 Intermediate Similarity NPD7782 Clinical (unspecified phase)
0.7474 Intermediate Similarity NPD7783 Phase 2
0.7472 Intermediate Similarity NPD8434 Phase 2
0.7472 Intermediate Similarity NPD8150 Discontinued
0.7466 Intermediate Similarity NPD1548 Phase 1
0.7456 Intermediate Similarity NPD919 Approved
0.7456 Intermediate Similarity NPD6234 Discontinued
0.7451 Intermediate Similarity NPD3027 Phase 3
0.745 Intermediate Similarity NPD1608 Approved
0.7434 Intermediate Similarity NPD1530 Clinical (unspecified phase)
0.7425 Intermediate Similarity NPD5760 Phase 2
0.7425 Intermediate Similarity NPD5761 Phase 2
0.7423 Intermediate Similarity NPD6273 Approved
0.7419 Intermediate Similarity NPD6823 Phase 2
0.7418 Intermediate Similarity NPD6534 Approved
0.7418 Intermediate Similarity NPD6535 Approved
0.7417 Intermediate Similarity NPD2797 Approved
0.7407 Intermediate Similarity NPD7701 Phase 2
0.7403 Intermediate Similarity NPD3764 Approved
0.7403 Intermediate Similarity NPD6410 Clinical (unspecified phase)
0.74 Intermediate Similarity NPD4749 Approved
0.7389 Intermediate Similarity NPD4287 Approved
0.7384 Intermediate Similarity NPD7184 Clinical (unspecified phase)
0.7381 Intermediate Similarity NPD4288 Approved
0.7378 Intermediate Similarity NPD6980 Clinical (unspecified phase)
0.7377 Intermediate Similarity NPD4361 Phase 2
0.7377 Intermediate Similarity NPD4362 Clinical (unspecified phase)
0.7375 Intermediate Similarity NPD5698 Clinical (unspecified phase)
0.7372 Intermediate Similarity NPD5124 Phase 1
0.7372 Intermediate Similarity NPD447 Suspended
0.7372 Intermediate Similarity NPD5123 Clinical (unspecified phase)
0.7368 Intermediate Similarity NPD8151 Discontinued
0.7358 Intermediate Similarity NPD1471 Phase 3
0.7356 Intermediate Similarity NPD7228 Approved
0.7333 Intermediate Similarity NPD1653 Approved
0.7333 Intermediate Similarity NPD9717 Approved
0.733 Intermediate Similarity NPD7875 Clinical (unspecified phase)
0.733 Intermediate Similarity NPD7874 Approved
0.7318 Intermediate Similarity NPD8055 Clinical (unspecified phase)
0.7297 Intermediate Similarity NPD7700 Phase 2
0.7297 Intermediate Similarity NPD7699 Phase 2
0.7296 Intermediate Similarity NPD5408 Approved
0.7296 Intermediate Similarity NPD5404 Approved
0.7296 Intermediate Similarity NPD5406 Approved
0.7296 Intermediate Similarity NPD5405 Approved
0.7292 Intermediate Similarity NPD7801 Approved
0.729 Intermediate Similarity NPD1699 Clinical (unspecified phase)
0.7288 Intermediate Similarity NPD3658 Clinical (unspecified phase)
0.7284 Intermediate Similarity NPD6190 Approved
0.7267 Intermediate Similarity NPD2654 Approved
0.7267 Intermediate Similarity NPD422 Phase 1
0.7248 Intermediate Similarity NPD17 Approved
0.7244 Intermediate Similarity NPD6233 Phase 2
0.7243 Intermediate Similarity NPD8090 Clinical (unspecified phase)
0.7233 Intermediate Similarity NPD4308 Phase 3
0.7219 Intermediate Similarity NPD3972 Approved
0.7205 Intermediate Similarity NPD2424 Discontinued
0.7197 Intermediate Similarity NPD4060 Phase 1
0.7195 Intermediate Similarity NPD6143 Clinical (unspecified phase)

Structure

External Identifiers

PubChem CID   11450273
ChEMBL   CHEMBL484836
ZINC  

Physicochemical Properties

Molecular Weight:  328.09
ALogP:  -1.0932
MLogP:  2.78
XLogP:  0.521
# Rotatable Bonds:  8
Polar Surface Area:  107.22
# H-Bond Aceptor:  2
# H-Bond Donor:  4
# Rings:  3
# Heavy Atoms:  24

Download Data

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General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs