Natural Product: NPC245346

Natural Product ID:  NPC245346
Common Name:   Proline
IUPAC Name:   pyrrolidin-1-ium-2-carboxylate
Synonyms:   Proline
Molecular Formula:   C5H9NO2
Standard InCHIKey:  ONIBWKKTOPOVIA-UHFFFAOYSA-N
Standard InCHI:  InChI=1S/C5H9NO2/c7-5(8)4-2-1-3-6-4/h4,6H,1-3H2,(H,7,8)
Canonical SMILES:  OC(=O)C1CCCN1
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO21027 Daphnia magna Species Daphniidae Eukaryota PMID[20117838]
NPO6232 Streptomyces griseus Species Streptomycetaceae Bacteria StreptomeDB*
NPO7103 Allium sativum Species Amaryllidaceae Eukaryota TM-MC*
NPO2921 Angelica acutiloba Species Apiaceae Eukaryota TM-MC*
NPO11438 Angelica gigas Species Apiaceae Eukaryota TM-MC*
NPO15462 Angelica sinensis Species Apiaceae Eukaryota TM-MC*
NPO29007 Brassica juncea Species Brassicaceae Eukaryota TM-MC*
NPO14964 Calvatia gigantea Species Lycoperdaceae Eukaryota TM-MC*
NPO17030 Calvatia lilacina Species Lycoperdaceae Eukaryota TM-MC*
NPO26293 Ginkgo biloba Species Ginkgoaceae Eukaryota TM-MC*
NPO4554 Isatis tinctoria Species Brassicaceae Eukaryota TM-MC*
NPO21845 Calvatia fenzlii Species Lycoperdaceae Eukaryota TM-MC*
NPO29141 Panax ginseng Species Araliaceae Eukaryota TM-MC*
NPO784 Sinapis alba Species Brassicaceae Eukaryota TM-MC*
NPO1596 Taraxacum borealisinense Species Asteraceae Eukaryota TM-MC*
NPO23327 Taraxacum coreanum Species Asteraceae Eukaryota TM-MC*
NPO26785 Taraxacum mongolicum Species Asteraceae Eukaryota TM-MC*
NPO26622 Taraxacum officinale Species Asteraceae Eukaryota TM-MC*
NPO13668 Taraxacum platycarpum Species Asteraceae Eukaryota TM-MC*
NPO523 Tussilago farfara Species Asteraceae Eukaryota TM-MC*

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT3581 Individual Protein Dihydrodipicolinate synthase Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) Inhibition = 0 % 10.1016/0960-894X(94)85023-2
NPT1163 Individual Protein Glutamate (NMDA) receptor subunit zeta 1 Rattus norvegicus IC50 = 17200 nM 1310117
NPT53 Individual Protein 4'-phosphopantetheinyl transferase ffp Bacillus subtilis Potency = 56234.1 nM PubChem BioAssay data set
NPT533 Protein-Protein Interaction Runt-related transcription factor 1/Core-binding factor subunit beta Homo sapiens Potency 14125.4 nM PubChem BioAssay data set
NPT199 Individual Protein DNA polymerase kappa Homo sapiens Potency 42284.1 nM PubChem BioAssay data set
NPT368 Cell Line SN12C Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT367 Cell Line MDA-N Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT370 Cell Line NCI-H23 Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT371 Cell Line UO-31 Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT369 Cell Line ACHN Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT116 Cell Line HL-60 Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT372 Cell Line HOP-92 Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT374 Cell Line SF-539 Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT90 Cell Line DU-145 Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT373 Cell Line SK-MEL-5 Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT375 Cell Line Malme-3M Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT376 Cell Line A498 Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT111 Cell Line K562 Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT377 Cell Line OVCAR-3 Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT112 Cell Line MOLT-4 Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT379 Cell Line HOP-62 Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT380 Cell Line U-251 Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT378 Cell Line NCI/ADR-RES Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT382 Cell Line OVCAR-5 Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT381 Cell Line OVCAR-8 Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT383 Cell Line SNB-19 Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT82 Cell Line MDA-MB-231 Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT385 Cell Line SR Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT384 Cell Line TK-10 Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT323 Cell Line SW-620 Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT455 Cell Line NCI-H522 Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT386 Cell Line KM12 Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT387 Cell Line M14 Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT388 Cell Line NCI-H322M Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT389 Cell Line RPMI-8226 Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT456 Cell Line OVCAR-4 Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT390 Cell Line LOX IMVI Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT457 Cell Line BT-549 Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT147 Cell Line SK-MEL-2 Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT81 Cell Line A549 Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT391 Cell Line HCC 2998 Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT392 Cell Line SNB-75 Homo sapiens GI50 57411.65 nM PubChem BioAssay data set
NPT148 Cell Line HCT-15 Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT393 Cell Line HCT-116 Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT395 Cell Line SF-268 Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT83 Cell Line MCF7 Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT394 Cell Line EKVX Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT306 Cell Line PC-3 Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT146 Cell Line SK-OV-3 Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT397 Cell Line NCI-H460 Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT396 Cell Line T47D Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT398 Cell Line UACC-62 Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT400 Cell Line MDA-MB-435 Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT458 Cell Line IGROV-1 Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT399 Cell Line SF-295 Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT402 Cell Line Hs-578T Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT403 Cell Line UACC-257 Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT401 Cell Line 786-0 Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT405 Cell Line NCI-H226 Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT170 Cell Line SK-MEL-28 Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT139 Cell Line HT-29 Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT407 Cell Line COLO 205 Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT406 Cell Line RXF 393 Homo sapiens GI50 100000 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency 134.5 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency 6007 nM PubChem BioAssay data set

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC245346 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC302003
1.0 High Similarity NPC11433
0.8689 High Similarity NPC135539
0.8689 High Similarity NPC196359
0.8689 High Similarity NPC78312
0.8689 High Similarity NPC221764
0.8413 Intermediate Similarity NPC15864
0.8226 Intermediate Similarity NPC287693
0.8136 Intermediate Similarity NPC64250
0.8136 Intermediate Similarity NPC268927
0.8136 Intermediate Similarity NPC276928
0.8125 Intermediate Similarity NPC322274
0.8036 Intermediate Similarity NPC274499
0.8036 Intermediate Similarity NPC333075
0.8036 Intermediate Similarity NPC8488
0.7963 Intermediate Similarity NPC93081
0.7963 Intermediate Similarity NPC140872
0.791 Intermediate Similarity NPC320221
0.7581 Intermediate Similarity NPC118429
0.7536 Intermediate Similarity NPC327272
0.75 Intermediate Similarity NPC160661
0.7407 Intermediate Similarity NPC327698
0.7407 Intermediate Similarity NPC118459
0.7358 Intermediate Similarity NPC276294
0.7344 Intermediate Similarity NPC226453
0.7344 Intermediate Similarity NPC103130
0.7288 Intermediate Similarity NPC183845
0.7288 Intermediate Similarity NPC279661
0.7241 Intermediate Similarity NPC200550
0.7241 Intermediate Similarity NPC155156
0.7222 Intermediate Similarity NPC198301
0.7213 Intermediate Similarity NPC278209
0.7193 Intermediate Similarity NPC112890
0.7193 Intermediate Similarity NPC316231
0.7193 Intermediate Similarity NPC324825
0.7164 Intermediate Similarity NPC107224
0.7121 Intermediate Similarity NPC327985
0.7 Intermediate Similarity NPC272396
0.6897 Remote Similarity NPC62045
0.6897 Remote Similarity NPC43204
0.6897 Remote Similarity NPC84636
0.6897 Remote Similarity NPC226027
0.6897 Remote Similarity NPC162620
0.6897 Remote Similarity NPC174246
0.6897 Remote Similarity NPC245027
0.6875 Remote Similarity NPC177191
0.6866 Remote Similarity NPC325534
0.6842 Remote Similarity NPC101249
0.6812 Remote Similarity NPC133183
0.678 Remote Similarity NPC137958
0.678 Remote Similarity NPC273330
0.6761 Remote Similarity NPC185084
0.6716 Remote Similarity NPC278881
0.6709 Remote Similarity NPC69374
0.6709 Remote Similarity NPC90476
0.6667 Remote Similarity NPC10262
0.6667 Remote Similarity NPC311668
0.6667 Remote Similarity NPC121517
0.6667 Remote Similarity NPC168375
0.6667 Remote Similarity NPC65832
0.6667 Remote Similarity NPC326992
0.662 Remote Similarity NPC328457
0.6607 Remote Similarity NPC323974
0.6562 Remote Similarity NPC176164
0.6562 Remote Similarity NPC189301
0.6557 Remote Similarity NPC197087
0.6557 Remote Similarity NPC190184
0.6508 Remote Similarity NPC38463
0.6508 Remote Similarity NPC325985
0.6491 Remote Similarity NPC329263
0.6462 Remote Similarity NPC254541
0.6462 Remote Similarity NPC320598
0.6429 Remote Similarity NPC291186
0.6429 Remote Similarity NPC167986
0.6349 Remote Similarity NPC2801
0.6316 Remote Similarity NPC126925
0.6316 Remote Similarity NPC325097
0.6316 Remote Similarity NPC132307
0.6269 Remote Similarity NPC474014
0.6269 Remote Similarity NPC30126
0.6269 Remote Similarity NPC314510
0.6269 Remote Similarity NPC62507
0.6269 Remote Similarity NPC8087
0.6269 Remote Similarity NPC57846
0.6269 Remote Similarity NPC322206
0.6232 Remote Similarity NPC472609
0.6212 Remote Similarity NPC317143
0.6212 Remote Similarity NPC321536
0.6212 Remote Similarity NPC316826
0.6212 Remote Similarity NPC321468
0.6212 Remote Similarity NPC327748
0.6197 Remote Similarity NPC81647
0.6154 Remote Similarity NPC318260
0.6154 Remote Similarity NPC317147
0.6154 Remote Similarity NPC283786
0.6129 Remote Similarity NPC155512
0.6119 Remote Similarity NPC327170
0.6119 Remote Similarity NPC329564
0.6119 Remote Similarity NPC143722
0.6119 Remote Similarity NPC68974
0.6111 Remote Similarity NPC216443
0.6102 Remote Similarity NPC49952
0.6102 Remote Similarity NPC136476
0.6094 Remote Similarity NPC322573
0.6087 Remote Similarity NPC57420
0.6087 Remote Similarity NPC315744
0.6076 Remote Similarity NPC219340
0.6071 Remote Similarity NPC53449
0.6071 Remote Similarity NPC66043
0.6061 Remote Similarity NPC190385
0.6056 Remote Similarity NPC222327
0.6056 Remote Similarity NPC188231
0.6023 Remote Similarity NPC40663
0.6 Remote Similarity NPC474928
0.6 Remote Similarity NPC18188
0.6 Remote Similarity NPC136159
0.5974 Remote Similarity NPC59867
0.5968 Remote Similarity NPC50457
0.5932 Remote Similarity NPC208793
0.5932 Remote Similarity NPC285322
0.5926 Remote Similarity NPC272614
0.5926 Remote Similarity NPC21290
0.5926 Remote Similarity NPC116709
0.5915 Remote Similarity NPC101746
0.5915 Remote Similarity NPC473952
0.5915 Remote Similarity NPC77191
0.5915 Remote Similarity NPC69798
0.5915 Remote Similarity NPC116377
0.5904 Remote Similarity NPC469363
0.5902 Remote Similarity NPC153370
0.5873 Remote Similarity NPC19576
0.5873 Remote Similarity NPC322946
0.5873 Remote Similarity NPC29950
0.5873 Remote Similarity NPC202525
0.5857 Remote Similarity NPC289691
0.5846 Remote Similarity NPC10915
0.5833 Remote Similarity NPC297220
0.5833 Remote Similarity NPC309658
0.5818 Remote Similarity NPC63621
0.5806 Remote Similarity NPC152451
0.5806 Remote Similarity NPC328378
0.5806 Remote Similarity NPC170739
0.5806 Remote Similarity NPC93888
0.5806 Remote Similarity NPC270805
0.5806 Remote Similarity NPC193989
0.5789 Remote Similarity NPC326212
0.5789 Remote Similarity NPC237525
0.5781 Remote Similarity NPC263065
0.5781 Remote Similarity NPC245768
0.5781 Remote Similarity NPC189178
0.5775 Remote Similarity NPC325597
0.5775 Remote Similarity NPC174304
0.5741 Remote Similarity NPC134570
0.5733 Remote Similarity NPC306973
0.5714 Remote Similarity NPC243964
0.5714 Remote Similarity NPC125736
0.5714 Remote Similarity NPC315977
0.5694 Remote Similarity NPC128005
0.5694 Remote Similarity NPC84182
0.5692 Remote Similarity NPC321118
0.5692 Remote Similarity NPC316889
0.5679 Remote Similarity NPC475542
0.5667 Remote Similarity NPC117829
0.5658 Remote Similarity NPC29326
0.5658 Remote Similarity NPC315897
0.5634 Remote Similarity NPC106216
0.5634 Remote Similarity NPC88898
0.5616 Remote Similarity NPC60424
0.5616 Remote Similarity NPC314221
0.5616 Remote Similarity NPC118524
0.5606 Remote Similarity NPC327831
0.5606 Remote Similarity NPC275727
0.56 Remote Similarity NPC475694
0.56 Remote Similarity NPC473710

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC245346 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
1.0 High Similarity NPD8865 Approved
0.8689 High Similarity NPD8868 Approved
0.7963 Intermediate Similarity NPD8808 Approved
0.7963 Intermediate Similarity NPD8809 Approved
0.7581 Intermediate Similarity NPD9014 Approved
0.7361 Intermediate Similarity NPD617 Approved
0.7344 Intermediate Similarity NPD9047 Approved
0.7344 Intermediate Similarity NPD9048 Approved
0.7344 Intermediate Similarity NPD9046 Phase 3
0.7344 Intermediate Similarity NPD9045 Approved
0.7193 Intermediate Similarity NPD9016 Clinical (unspecified phase)
0.7193 Intermediate Similarity NPD9044 Approved
0.7015 Intermediate Similarity NPD9232 Phase 2
0.7015 Intermediate Similarity NPD9233 Phase 3
0.7015 Intermediate Similarity NPD9231 Phase 3
0.6957 Remote Similarity NPD2220 Clinical (unspecified phase)
0.6957 Remote Similarity NPD9649 Approved
0.6897 Remote Similarity NPD9018 Approved
0.6897 Remote Similarity NPD9017 Approved
0.6866 Remote Similarity NPD8952 Approved
0.6842 Remote Similarity NPD8866 Approved
0.6842 Remote Similarity NPD8867 Approved
0.678 Remote Similarity NPD8871 Approved
0.678 Remote Similarity NPD8872 Phase 3
0.6774 Remote Similarity NPD8979 Approved
0.6774 Remote Similarity NPD8981 Clinical (unspecified phase)
0.6774 Remote Similarity NPD8980 Approved
0.6667 Remote Similarity NPD9451 Clinical (unspecified phase)
0.6667 Remote Similarity NPD9217 Clinical (unspecified phase)
0.6607 Remote Similarity NPD9019 Approved
0.6562 Remote Similarity NPD8848 Approved
0.6557 Remote Similarity NPD8851 Phase 1
0.6557 Remote Similarity NPD8785 Approved
0.6438 Remote Similarity NPD366 Approved
0.6429 Remote Similarity NPD8805 Approved
0.6429 Remote Similarity NPD8804 Approved
0.6316 Remote Similarity NPD8798 Approved
0.631 Remote Similarity NPD2682 Approved
0.6308 Remote Similarity NPD9433 Approved
0.6203 Remote Similarity NPD1125 Discovery
0.6118 Remote Similarity NPD4261 Phase 1
0.6061 Remote Similarity NPD9023 Clinical (unspecified phase)
0.6 Remote Similarity NPD8623 Phase 1
0.6 Remote Similarity NPD8973 Approved
0.6 Remote Similarity NPD8972 Approved
0.6 Remote Similarity NPD8850 Approved
0.5932 Remote Similarity NPD8610 Approved
0.5926 Remote Similarity NPD8211 Approved
0.5926 Remote Similarity NPD8210 Phase 3
0.5909 Remote Similarity NPD9425 Approved
0.5904 Remote Similarity NPD7759 Phase 2
0.5904 Remote Similarity NPD7760 Phase 2
0.5902 Remote Similarity NPD8614 Approved
0.5889 Remote Similarity NPD3715 Approved
0.5889 Remote Similarity NPD3713 Approved
0.5889 Remote Similarity NPD3714 Approved
0.5873 Remote Similarity NPD8846 Approved
0.5873 Remote Similarity NPD61 Approved
0.5873 Remote Similarity NPD9441 Phase 2
0.5873 Remote Similarity NPD8847 Approved
0.5846 Remote Similarity NPD8971 Approved
0.5833 Remote Similarity NPD8801 Approved
0.5806 Remote Similarity NPD8624 Approved
0.5806 Remote Similarity NPD8803 Clinical (unspecified phase)
0.5806 Remote Similarity NPD8946 Approved
0.5806 Remote Similarity NPD9021 Approved
0.5806 Remote Similarity NPD8947 Approved
0.5806 Remote Similarity NPD8802 Approved
0.5781 Remote Similarity NPD9204 Approved
0.5781 Remote Similarity NPD9205 Approved
0.5775 Remote Similarity NPD348 Approved
0.5765 Remote Similarity NPD3177 Phase 3
0.5758 Remote Similarity NPD8864 Clinical (unspecified phase)
0.5694 Remote Similarity NPD9442 Clinical (unspecified phase)
0.5676 Remote Similarity NPD620 Approved
0.5663 Remote Similarity NPD9577 Approved
0.5658 Remote Similarity NPD1825 Clinical (unspecified phase)
0.5641 Remote Similarity NPD9224 Clinical (unspecified phase)
0.5616 Remote Similarity NPD9421 Phase 1
0.5616 Remote Similarity NPD886 Clinical (unspecified phase)
0.5616 Remote Similarity NPD1429 Clinical (unspecified phase)

Structure

External Identifiers

PubChem CID   25246272;614
ChEMBL   CHEMBL72275
ZINC  

Physicochemical Properties

Molecular Weight:  115.06
ALogP:  -1.3817
MLogP:  1.68
XLogP:  -0.185
# Rotatable Bonds:  2
Polar Surface Area:  49.33
# H-Bond Aceptor:  3
# H-Bond Donor:  2
# Rings:  1
# Heavy Atoms:  8

Download Data

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Biological Activities  
Similar NPs/Drugs