Natural Product: NPC109151

Natural Product ID:  NPC109151
Common Name:   Epipachysamine D
IUPAC Name:   N-[(3S,5S,8R,9S,10S,13S,14S,17S)-17-[(1S)-1-(dimethylamino)ethyl]-10,13-dimethyl-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthren-3-yl]benzamide
Synonyms:   (+)-Epipachysamine D
Molecular Formula:   C30H46N2O
Standard InCHIKey:  SFKPSOAYNYYOLN-IBWRYCSWSA-N
Standard InCHI:  InChI=1S/C30H46N2O/c1-20(32(4)5)25-13-14-26-24-12-11-22-19-23(31-28(33)21-9-7-6-8-10-21)15-17-29(22,2)27(24)16-18-30(25,26)3/h6-10,20,22-27H,11-19H2,1-5H3,(H,31,33)/t20-,22-,23-,24-,25+,26-,27-,29-,30+/m0/s1
Canonical SMILES:  CN([C@H]([C@H]1CC[C@@H]2[C@]1(C)CC[C@H]1[C@H]2CC[C@@H]2[C@]1(C)CC[C@@H](C2)N=C(c1ccccc1)O)C)C
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO27888 Sarcococca saligna Species Buxaceae Eukaryota PMID[14643329]
NPO4994 Pachysandra procumbens Species Buxaceae Eukaryota PMID[9784163]
NPO27888 Sarcococca saligna Species Buxaceae Eukaryota PMID[9548847]
NPO13852 Pachysandra terminalis Species Buxaceae Eukaryota TCMID*

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT204 Individual Protein Acetylcholinesterase Homo sapiens IC50 = 28840.32 nM 14643329
NPT3844 Protein Complex Anti-estrogen binding site (AEBS) Homo sapiens IC50 > 20000 nM 9784163
NPT16 Organism Staphylococcus aureus Staphylococcus aureus IZ = 7 mm 9548847

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC109151 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.912 High Similarity NPC132847
0.874 High Similarity NPC3202
0.8409 Intermediate Similarity NPC153007
0.8162 Intermediate Similarity NPC473922
0.8085 Intermediate Similarity NPC275839
0.7914 Intermediate Similarity NPC475578
0.7845 Intermediate Similarity NPC474582
0.766 Intermediate Similarity NPC328824
0.766 Intermediate Similarity NPC44649
0.7583 Intermediate Similarity NPC474695
0.7552 Intermediate Similarity NPC476757
0.7481 Intermediate Similarity NPC89769
0.7481 Intermediate Similarity NPC126859
0.7481 Intermediate Similarity NPC259665
0.746 Intermediate Similarity NPC246904
0.7451 Intermediate Similarity NPC476749
0.7438 Intermediate Similarity NPC211551
0.7436 Intermediate Similarity NPC33168
0.7432 Intermediate Similarity NPC217801
0.7407 Intermediate Similarity NPC124802
0.7402 Intermediate Similarity NPC473573
0.7333 Intermediate Similarity NPC8305
0.7333 Intermediate Similarity NPC268763
0.7333 Intermediate Similarity NPC66177
0.7333 Intermediate Similarity NPC235460
0.7315 Intermediate Similarity NPC93343
0.7237 Intermediate Similarity NPC476750
0.7208 Intermediate Similarity NPC98187
0.72 Intermediate Similarity NPC292758
0.72 Intermediate Similarity NPC65855
0.7197 Intermediate Similarity NPC273830
0.7122 Intermediate Similarity NPC149379
0.7107 Intermediate Similarity NPC469457
0.7105 Intermediate Similarity NPC198747
0.7089 Intermediate Similarity NPC476751
0.6985 Remote Similarity NPC472414
0.6967 Remote Similarity NPC214200
0.6967 Remote Similarity NPC228400
0.6963 Remote Similarity NPC472415
0.6957 Remote Similarity NPC40488
0.6923 Remote Similarity NPC172128
0.6917 Remote Similarity NPC25565
0.6912 Remote Similarity NPC473938
0.6911 Remote Similarity NPC318154
0.6884 Remote Similarity NPC210950
0.6884 Remote Similarity NPC199738
0.6875 Remote Similarity NPC474149
0.687 Remote Similarity NPC317254
0.6861 Remote Similarity NPC4974
0.6861 Remote Similarity NPC79698
0.686 Remote Similarity NPC311242
0.686 Remote Similarity NPC475439
0.686 Remote Similarity NPC473501
0.6855 Remote Similarity NPC19856
0.6852 Remote Similarity NPC203005
0.6835 Remote Similarity NPC71271
0.6833 Remote Similarity NPC303045
0.6833 Remote Similarity NPC161972
0.6831 Remote Similarity NPC325568
0.6825 Remote Similarity NPC274089
0.6825 Remote Similarity NPC191215
0.6822 Remote Similarity NPC322753
0.6818 Remote Similarity NPC82963
0.6818 Remote Similarity NPC472862
0.6809 Remote Similarity NPC246913
0.6809 Remote Similarity NPC42423
0.6807 Remote Similarity NPC265521
0.68 Remote Similarity NPC56168
0.6794 Remote Similarity NPC118202
0.6783 Remote Similarity NPC152684
0.6767 Remote Similarity NPC311737
0.6767 Remote Similarity NPC38458
0.6761 Remote Similarity NPC313663
0.6746 Remote Similarity NPC243601
0.6742 Remote Similarity NPC469719
0.6738 Remote Similarity NPC183722
0.6719 Remote Similarity NPC153690
0.6714 Remote Similarity NPC116057
0.6714 Remote Similarity NPC472413
0.6713 Remote Similarity NPC64897
0.6713 Remote Similarity NPC90693
0.6712 Remote Similarity NPC243162
0.6694 Remote Similarity NPC289117
0.6691 Remote Similarity NPC278097
0.6667 Remote Similarity NPC258056
0.6667 Remote Similarity NPC283760
0.6641 Remote Similarity NPC27252
0.6641 Remote Similarity NPC142297
0.6641 Remote Similarity NPC472979
0.664 Remote Similarity NPC50815
0.664 Remote Similarity NPC471083
0.6639 Remote Similarity NPC159178
0.6639 Remote Similarity NPC74936
0.6639 Remote Similarity NPC316108
0.6639 Remote Similarity NPC141139
0.6639 Remote Similarity NPC121872
0.6639 Remote Similarity NPC3371
0.6639 Remote Similarity NPC209764
0.6639 Remote Similarity NPC78041
0.6639 Remote Similarity NPC471307
0.6621 Remote Similarity NPC478140
0.662 Remote Similarity NPC126458
0.6599 Remote Similarity NPC150712
0.6596 Remote Similarity NPC295478
0.6591 Remote Similarity NPC1986
0.6591 Remote Similarity NPC474544
0.6589 Remote Similarity NPC24101
0.6589 Remote Similarity NPC64642
0.6589 Remote Similarity NPC472982
0.6589 Remote Similarity NPC149455
0.6589 Remote Similarity NPC96224
0.6587 Remote Similarity NPC90538
0.6583 Remote Similarity NPC79917
0.6583 Remote Similarity NPC226438
0.6581 Remote Similarity NPC203076
0.6581 Remote Similarity NPC166458
0.6573 Remote Similarity NPC473962
0.6567 Remote Similarity NPC470544
0.6562 Remote Similarity NPC231705
0.6557 Remote Similarity NPC58674
0.6555 Remote Similarity NPC470877
0.6547 Remote Similarity NPC307020
0.6544 Remote Similarity NPC43275
0.6535 Remote Similarity NPC88267
0.6535 Remote Similarity NPC113326
0.6535 Remote Similarity NPC226778
0.6535 Remote Similarity NPC147000
0.6535 Remote Similarity NPC150254
0.6535 Remote Similarity NPC194390
0.6535 Remote Similarity NPC224610
0.6535 Remote Similarity NPC304761
0.6529 Remote Similarity NPC314690
0.6522 Remote Similarity NPC14326
0.6519 Remote Similarity NPC470545
0.6513 Remote Similarity NPC254798
0.6512 Remote Similarity NPC472980
0.6508 Remote Similarity NPC247060
0.6507 Remote Similarity NPC208725
0.6496 Remote Similarity NPC99734
0.6489 Remote Similarity NPC95126
0.6489 Remote Similarity NPC475002
0.6486 Remote Similarity NPC239770
0.6486 Remote Similarity NPC476989
0.6484 Remote Similarity NPC55462
0.6484 Remote Similarity NPC471133
0.6475 Remote Similarity NPC471309
0.6471 Remote Similarity NPC164649
0.6471 Remote Similarity NPC48342
0.6471 Remote Similarity NPC470546
0.6466 Remote Similarity NPC146703
0.6463 Remote Similarity NPC316906
0.6449 Remote Similarity NPC316896
0.6446 Remote Similarity NPC220596
0.6444 Remote Similarity NPC137496
0.6444 Remote Similarity NPC474387
0.6444 Remote Similarity NPC257540
0.6444 Remote Similarity NPC247858
0.6444 Remote Similarity NPC154511
0.6444 Remote Similarity NPC474358
0.6439 Remote Similarity NPC471188
0.6439 Remote Similarity NPC77772
0.6435 Remote Similarity NPC257962
0.6434 Remote Similarity NPC478147
0.6433 Remote Similarity NPC477156
0.6433 Remote Similarity NPC477157
0.6429 Remote Similarity NPC245927
0.6429 Remote Similarity NPC155847
0.6429 Remote Similarity NPC285394
0.6429 Remote Similarity NPC289381
0.6429 Remote Similarity NPC470274
0.6418 Remote Similarity NPC33742
0.6414 Remote Similarity NPC244866
0.6412 Remote Similarity NPC472359
0.6406 Remote Similarity NPC315794
0.64 Remote Similarity NPC226096
0.64 Remote Similarity NPC303611
0.64 Remote Similarity NPC290515
0.64 Remote Similarity NPC164514
0.64 Remote Similarity NPC108606
0.6391 Remote Similarity NPC177962
0.6391 Remote Similarity NPC62867
0.6387 Remote Similarity NPC473031
0.6382 Remote Similarity NPC116519
0.6378 Remote Similarity NPC51015
0.6378 Remote Similarity NPC239854
0.6378 Remote Similarity NPC327226
0.6377 Remote Similarity NPC318552
0.6377 Remote Similarity NPC190501
0.6377 Remote Similarity NPC190663
0.6377 Remote Similarity NPC321133
0.6371 Remote Similarity NPC21959
0.637 Remote Similarity NPC228511
0.637 Remote Similarity NPC184437
0.6364 Remote Similarity NPC473322
0.6364 Remote Similarity NPC141782
0.6357 Remote Similarity NPC474559
0.6356 Remote Similarity NPC474354
0.6345 Remote Similarity NPC326966
0.6343 Remote Similarity NPC35850
0.6343 Remote Similarity NPC276949

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC109151 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.8195 Intermediate Similarity NPD8148 Approved
0.8195 Intermediate Similarity NPD8147 Approved
0.8095 Intermediate Similarity NPD2173 Clinical (unspecified phase)
0.775 Intermediate Similarity NPD6038 Clinical (unspecified phase)
0.7731 Intermediate Similarity NPD5717 Approved
0.7681 Intermediate Similarity NPD6522 Clinical (unspecified phase)
0.7627 Intermediate Similarity NPD4817 Approved
0.7627 Intermediate Similarity NPD4818 Approved
0.754 Intermediate Similarity NPD4031 Approved
0.754 Intermediate Similarity NPD4032 Approved
0.7537 Intermediate Similarity NPD2606 Approved
0.7537 Intermediate Similarity NPD2605 Approved
0.7535 Intermediate Similarity NPD8131 Suspended
0.75 Intermediate Similarity NPD179 Clinical (unspecified phase)
0.7481 Intermediate Similarity NPD5156 Approved
0.7481 Intermediate Similarity NPD5155 Approved
0.7479 Intermediate Similarity NPD4119 Approved
0.7479 Intermediate Similarity NPD5716 Approved
0.7426 Intermediate Similarity NPD8011 Discontinued
0.7419 Intermediate Similarity NPD4254 Approved
0.7419 Intermediate Similarity NPD4253 Approved
0.7417 Intermediate Similarity NPD3681 Approved
0.7417 Intermediate Similarity NPD3680 Approved
0.7417 Intermediate Similarity NPD3682 Approved
0.7417 Intermediate Similarity NPD3683 Approved
0.7417 Intermediate Similarity NPD4231 Approved
0.7417 Intermediate Similarity NPD4229 Approved
0.7407 Intermediate Similarity NPD3594 Approved
0.7407 Intermediate Similarity NPD3595 Approved
0.7398 Intermediate Similarity NPD4717 Approved
0.7398 Intermediate Similarity NPD4718 Approved
0.7398 Intermediate Similarity NPD4720 Approved
0.7385 Intermediate Similarity NPD7725 Approved
0.7376 Intermediate Similarity NPD6789 Approved
0.7344 Intermediate Similarity NPD3123 Discovery
0.7333 Intermediate Similarity NPD3637 Approved
0.7333 Intermediate Similarity NPD3635 Approved
0.7333 Intermediate Similarity NPD3636 Approved
0.7293 Intermediate Similarity NPD6025 Phase 1
0.7273 Intermediate Similarity NPD4658 Approved
0.7273 Intermediate Similarity NPD4656 Approved
0.7266 Intermediate Similarity NPD6086 Phase 2
0.7239 Intermediate Similarity NPD6330 Clinical (unspecified phase)
0.7227 Intermediate Similarity NPD4117 Approved
0.7209 Intermediate Similarity NPD6775 Clinical (unspecified phase)
0.7203 Intermediate Similarity NPD2895 Discontinued
0.719 Intermediate Similarity NPD4719 Phase 2
0.7172 Intermediate Similarity NPD7740 Clinical (unspecified phase)
0.7154 Intermediate Similarity NPD7522 Discontinued
0.7133 Intermediate Similarity NPD2174 Clinical (unspecified phase)
0.7063 Intermediate Similarity NPD6897 Clinical (unspecified phase)
0.7063 Intermediate Similarity NPD1792 Phase 2
0.7045 Intermediate Similarity NPD4093 Discontinued
0.704 Intermediate Similarity NPD4095 Clinical (unspecified phase)
0.6992 Remote Similarity NPD1751 Approved
0.697 Remote Similarity NPD2227 Clinical (unspecified phase)
0.697 Remote Similarity NPD5303 Approved
0.697 Remote Similarity NPD2226 Clinical (unspecified phase)
0.697 Remote Similarity NPD5304 Approved
0.695 Remote Similarity NPD6346 Approved
0.6911 Remote Similarity NPD855 Approved
0.6911 Remote Similarity NPD854 Approved
0.6897 Remote Similarity NPD4725 Approved
0.6897 Remote Similarity NPD4721 Approved
0.6897 Remote Similarity NPD4726 Approved
0.6889 Remote Similarity NPD5351 Clinical (unspecified phase)
0.6889 Remote Similarity NPD5350 Clinical (unspecified phase)
0.6875 Remote Similarity NPD4025 Clinical (unspecified phase)
0.6871 Remote Similarity NPD7253 Phase 3
0.6846 Remote Similarity NPD2228 Approved
0.6846 Remote Similarity NPD2234 Approved
0.6846 Remote Similarity NPD2229 Approved
0.6838 Remote Similarity NPD7250 Approved
0.6838 Remote Similarity NPD7249 Approved
0.6831 Remote Similarity NPD3110 Approved
0.6831 Remote Similarity NPD3109 Approved
0.6829 Remote Similarity NPD4760 Clinical (unspecified phase)
0.6825 Remote Similarity NPD1444 Approved
0.6825 Remote Similarity NPD1445 Approved
0.6822 Remote Similarity NPD2499 Approved
0.6822 Remote Similarity NPD2500 Approved
0.6807 Remote Similarity NPD752 Approved
0.6807 Remote Similarity NPD6690 Approved
0.6803 Remote Similarity NPD3638 Discontinued
0.6791 Remote Similarity NPD1710 Approved
0.6783 Remote Similarity NPD7430 Approved
0.6783 Remote Similarity NPD7431 Approved
0.6772 Remote Similarity NPD6406 Approved
0.6763 Remote Similarity NPD2195 Approved
0.6763 Remote Similarity NPD2194 Approved
0.6761 Remote Similarity NPD7715 Approved
0.6761 Remote Similarity NPD7714 Approved
0.6757 Remote Similarity NPD6676 Phase 2
0.6757 Remote Similarity NPD6506 Clinical (unspecified phase)
0.6735 Remote Similarity NPD4256 Phase 2
0.6735 Remote Similarity NPD4257 Approved
0.6721 Remote Similarity NPD2487 Clinical (unspecified phase)
0.6721 Remote Similarity NPD1875 Phase 1
0.672 Remote Similarity NPD5103 Approved
0.6715 Remote Similarity NPD6624 Discontinued
0.6711 Remote Similarity NPD7910 Clinical (unspecified phase)
0.6694 Remote Similarity NPD4814 Discontinued
0.6692 Remote Similarity NPD4573 Approved
0.6692 Remote Similarity NPD4230 Clinical (unspecified phase)
0.6692 Remote Similarity NPD4572 Approved
0.6692 Remote Similarity NPD4571 Approved
0.6691 Remote Similarity NPD6563 Approved
0.6691 Remote Similarity NPD6565 Approved
0.6691 Remote Similarity NPD6564 Approved
0.6667 Remote Similarity NPD3851 Clinical (unspecified phase)
0.6667 Remote Similarity NPD159 Clinical (unspecified phase)
0.6643 Remote Similarity NPD7451 Discontinued
0.6642 Remote Similarity NPD5618 Discontinued
0.6641 Remote Similarity NPD3066 Phase 2
0.6641 Remote Similarity NPD4165 Phase 2
0.6619 Remote Similarity NPD3125 Approved
0.6619 Remote Similarity NPD6320 Approved
0.6615 Remote Similarity NPD3644 Approved
0.6615 Remote Similarity NPD3643 Approved
0.6615 Remote Similarity NPD3642 Approved
0.6612 Remote Similarity NPD719 Approved
0.6612 Remote Similarity NPD3982 Approved
0.6612 Remote Similarity NPD3980 Approved
0.6612 Remote Similarity NPD5771 Approved
0.6612 Remote Similarity NPD720 Approved
0.6612 Remote Similarity NPD2878 Approved
0.6594 Remote Similarity NPD5335 Discontinued
0.6593 Remote Similarity NPD7741 Discontinued
0.6593 Remote Similarity NPD4479 Discontinued
0.6591 Remote Similarity NPD6854 Phase 3
0.6575 Remote Similarity NPD7718 Clinical (unspecified phase)
0.6562 Remote Similarity NPD3526 Approved
0.6562 Remote Similarity NPD3524 Approved
0.6562 Remote Similarity NPD5704 Approved
0.6562 Remote Similarity NPD5705 Approved
0.6562 Remote Similarity NPD5706 Approved
0.6557 Remote Similarity NPD3772 Phase 3
0.6552 Remote Similarity NPD4544 Approved
0.6547 Remote Similarity NPD4659 Approved
0.6544 Remote Similarity NPD1922 Discontinued
0.6544 Remote Similarity NPD2212 Approved
0.6544 Remote Similarity NPD2210 Approved
0.6541 Remote Similarity NPD1793 Approved
0.6541 Remote Similarity NPD1791 Approved
0.6538 Remote Similarity NPD5240 Approved
0.6538 Remote Similarity NPD5237 Approved
0.6538 Remote Similarity NPD5239 Approved
0.6538 Remote Similarity NPD5236 Approved
0.6538 Remote Similarity NPD5235 Approved
0.6535 Remote Similarity NPD314 Approved
0.6535 Remote Similarity NPD10 Approved
0.6535 Remote Similarity NPD311 Approved
0.6535 Remote Similarity NPD309 Approved
0.6535 Remote Similarity NPD310 Approved
0.6535 Remote Similarity NPD315 Approved
0.6533 Remote Similarity NPD7066 Clinical (unspecified phase)
0.6529 Remote Similarity NPD1814 Approved
0.6529 Remote Similarity NPD1812 Approved
0.6528 Remote Similarity NPD8118 Discontinued
0.6528 Remote Similarity NPD7086 Phase 2
0.6503 Remote Similarity NPD6919 Clinical (unspecified phase)
0.6496 Remote Similarity NPD4059 Approved
0.6496 Remote Similarity NPD5238 Clinical (unspecified phase)
0.6489 Remote Similarity NPD2583 Phase 2
0.6486 Remote Similarity NPD1884 Approved
0.648 Remote Similarity NPD9712 Approved
0.6479 Remote Similarity NPD6984 Approved
0.6475 Remote Similarity NPD2233 Approved
0.6475 Remote Similarity NPD2230 Approved
0.6475 Remote Similarity NPD5108 Clinical (unspecified phase)
0.6475 Remote Similarity NPD2232 Approved
0.6471 Remote Similarity NPD3091 Approved
0.6471 Remote Similarity NPD1101 Approved
0.6471 Remote Similarity NPD3645 Discontinued
0.6463 Remote Similarity NPD7231 Approved
0.6463 Remote Similarity NPD3553 Approved
0.6463 Remote Similarity NPD3554 Approved
0.6463 Remote Similarity NPD8154 Clinical (unspecified phase)
0.6463 Remote Similarity NPD7230 Approved
0.6463 Remote Similarity NPD3552 Approved
0.6463 Remote Similarity NPD3555 Approved
0.6462 Remote Similarity NPD8010 Approved
0.6462 Remote Similarity NPD8009 Approved
0.6457 Remote Similarity NPD1542 Approved
0.6454 Remote Similarity NPD4103 Phase 2
0.6454 Remote Similarity NPD4104 Clinical (unspecified phase)
0.6449 Remote Similarity NPD3897 Approved
0.6449 Remote Similarity NPD3421 Phase 3
0.6449 Remote Similarity NPD3896 Approved
0.6449 Remote Similarity NPD3895 Approved
0.6449 Remote Similarity NPD3898 Approved
0.6446 Remote Similarity NPD5190 Phase 2
0.6446 Remote Similarity NPD530 Approved
0.6444 Remote Similarity NPD7325 Clinical (unspecified phase)
0.6443 Remote Similarity NPD6809 Clinical (unspecified phase)
0.6438 Remote Similarity NPD7832 Clinical (unspecified phase)
0.6438 Remote Similarity NPD7833 Phase 2
0.6438 Remote Similarity NPD7831 Phase 2
0.6435 Remote Similarity NPD3035 Approved
0.6434 Remote Similarity NPD4698 Clinical (unspecified phase)

Structure

External Identifiers

PubChem CID   10433924
ChEMBL   CHEMBL136933
ZINC  

Physicochemical Properties

Molecular Weight:  450.36
ALogP:  0.9025
MLogP:  4.43
XLogP:  10.407
# Rotatable Bonds:  10
Polar Surface Area:  35.83
# H-Bond Aceptor:  3
# H-Bond Donor:  1
# Rings:  5
# Heavy Atoms:  33

Download Data

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General Info & Identifiers & Properties  
Structure MOL file  
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Biological Activities  
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