Collective Molecular Activities of the Plant: Coptis Trifolia
Plant ID: NPO28627
Plant Latin Name: Coptis Trifolia
Taxonomy Genus: Coptis
Taxonomy Family: Ranunculaceae
Plant External Links:
NCBI TaxonomyDB:
38790
Plant-of-the-World-Online:
n.a.
See the Plant Occurrence Worldwide with Latitude and Longitude Available
Overview of Ingredients
33 All known Ingredients in Total
Unique ingredients have been isolated from this plant.Plant-Ingredients Associations were manually curated from publications or collected from other databases.
30 Ingredients with Acceptable Bioavailablity
Unique ingredients exhibit acceptable human oral bioavailablity, according to the criteria of SwissADME [PMID: 28256516] and HobPre [PMID: 34991690]. The criteria details:SwissADME: six descriptors are used by SwissADME to evaluate the oral bioavailability of a natural product:
☑ LIPO(Lipophility): -0.7 < XLOGP3 < +5.0
☑ SIZE: 150g/mol < MW < 500g/mol
☑ POLAR(Polarity): 20Ų < TPSA < 130Ų
☑ INSOLU(Insolubility): -6 < Log S (ESOL) < 0
☑ INSATU(Insaturation): 0.25 < Fraction Csp3 < 1
☑ FLEX(Flexibility): 0 < Num. rotatable bonds < 9
If 6 descriptors of a natural plant satisfy the above rules, it will be labeled high HOB.
HobPre: A natural plant ingredient with HobPre score >0.5 is labeled high human oral availability (HOB)
10 Ingredients with experimental-derived Activity
Unique ingredients have activity data available.Ingredient Structrual Cards
Ingredient ID: NPC98941
Ingredient ID: NPC95077
Ingredient ID: NPC93765
Ingredient ID: NPC93716
Ingredient ID: NPC84868
Ingredient ID: NPC82947
Ingredient ID: NPC74673
Ingredient ID: NPC69271
Ingredient ID: NPC54151
Ingredient ID: NPC52405
Ingredient ID: NPC49824
Ingredient ID: NPC45764
Ingredient ID: NPC35698
Ingredient ID: NPC296370
Ingredient ID: NPC246951
Ingredient ID: NPC240563
Ingredient ID: NPC236326
Ingredient ID: NPC233414
Ingredient ID: NPC229345
Ingredient ID: NPC222334
Ingredient ID: NPC205093
Ingredient ID: NPC202768
Ingredient ID: NPC193588
Ingredient ID: NPC172638
Ingredient ID: NPC161187
Ingredient ID: NPC140543
Ingredient ID: NPC134330
Ingredient ID: NPC124682
Ingredient ID: NPC122476
Ingredient ID: NPC117400
Ingredient ID: NPC113733
Ingredient ID: NPC110398
Ingredient ID: NPC105342
Classification of Human Proteins Collectively Targeted by the Plant
Detailed Information of Target Proteins
| Target Type | Protein Class | Gene ID | Protein Name | Uniprot ID | Target ChEMBL ID |
|---|
Clinical trials associated with plant from natural product (NP) & plant level:
| Clinical trials type | Number of clinical trials |
|---|
| NCT ID | Title | Condition | Form in clinical use | Associated by plant or compound |
|---|
❱❱❱ Associated Human Diseases and Detailed Association Evidence
How do we define the Plant-Targeted Human Disease Association?
Associated human diseases of an individual plant are summurized based on FOUR types of association evidence, these include:
❶ Association by Therapeutic Target: Bioactive protein targets of the plant were defined in "Molecular Targets" section, target-disease associations collected from TTD database were subsequently used to build the associations between the plant and its targeted human diseases.
❷ Association by Disease Gene Reversion: Plant and a specific disease will be associated when >= 1 plant target gene overlaped with disease's DEGs.
❸ Association by Clinical Trials of Plant: Plant and a specific disease will be associated when >= 1 clinical trial (the plant is the intervetion) can be matched in ClinicalTrials.gov database.
❹ Association by Clinical Trials of Plant Ingredients: Plant and a specific disease will be associated when >= 1 clinical trial (the plant ingredient is the intervetion) can be matched in ClinicalTrials.gov database.
Associated Disease of the Plant |
Association Type & Detailed Evidence |
|---|
❱❱❱ Network Visualization of Plant-Targeted Human Disease Associations
>> Targets derived from weak experimental activities
