Structure

Physi-Chem Properties

Molecular Weight:  379.19
Volume:  387.192
LogP:  3.589
LogD:  3.01
LogS:  -3.824
# Rotatable Bonds:  2
TPSA:  65.64
# H-Bond Aceptor:  6
# H-Bond Donor:  1
# Rings:  5
# Heavy Atoms:  6

MedChem Properties

QED Drug-Likeness Score:  0.816
Synthetic Accessibility Score:  3.811
Fsp3:  0.455
Lipinski Rule-of-5:  Accepted
Pfizer Rule:  Rejected
GSK Rule:  Accepted
BMS Rule:  0
Golden Triangle Rule:  Accepted
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -4.748
MDCK Permeability:  1.0869273864955176e-05
Pgp-inhibitor:  0.475
Pgp-substrate:  0.425
Human Intestinal Absorption (HIA):  0.009
20% Bioavailability (F20%):  0.011
30% Bioavailability (F30%):  0.971

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.393
Plasma Protein Binding (PPB):  92.78404998779297%
Volume Distribution (VD):  0.753
Pgp-substrate:  5.8258867263793945%

ADMET: Metabolism

CYP1A2-inhibitor:  0.059
CYP1A2-substrate:  0.498
CYP2C19-inhibitor:  0.887
CYP2C19-substrate:  0.665
CYP2C9-inhibitor:  0.793
CYP2C9-substrate:  0.863
CYP2D6-inhibitor:  0.021
CYP2D6-substrate:  0.24
CYP3A4-inhibitor:  0.832
CYP3A4-substrate:  0.846

ADMET: Excretion

Clearance (CL):  10.084
Half-life (T1/2):  0.192

ADMET: Toxicity

hERG Blockers:  0.025
Human Hepatotoxicity (H-HT):  0.971
Drug-inuced Liver Injury (DILI):  0.966
AMES Toxicity:  0.039
Rat Oral Acute Toxicity:  0.802
Maximum Recommended Daily Dose:  0.931
Skin Sensitization:  0.422
Carcinogencity:  0.382
Eye Corrosion:  0.003
Eye Irritation:  0.009
Respiratory Toxicity:  0.984

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General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs  

  Natural Product: NPC305984

Natural Product ID:  NPC305984
Common Name*:   Fumitremorgin
IUPAC Name:   n.a.
Synonyms:   Fumitremorgin C
Standard InCHIKey:  DBEYVIGIPJSTOR-FHWLQOOXSA-N
Standard InCHI:  InChI=1S/C22H25N3O3/c1-12(2)9-18-20-15(14-7-6-13(28-3)10-16(14)23-20)11-19-21(26)24-8-4-5-17(24)22(27)25(18)19/h6-7,9-10,17-19,23H,4-5,8,11H2,1-3H3/t17-,18-,19-/m0/s1
SMILES:  COc1ccc2c(c1)[nH]c1c2C[C@@H]2N([C@H]1C=C(C)C)C(=O)[C@H]1N(C2=O)CCC1
Synthetic Gene Cluster:   BGC0000356;
ChEMBL Identifier:   CHEMBL410316
PubChem CID:   403923
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000002] Organoheterocyclic compounds
      • [CHEMONTID:0000211] Indoles and derivatives
        • [CHEMONTID:0001213] Pyridoindoles
          • [CHEMONTID:0001914] Beta carbolines

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO10538 Aspergillus fumigatus Species Aspergillaceae Eukaryota n.a. n.a. n.a. PMID[17616609]
NPO10538 Aspergillus fumigatus Species Aspergillaceae Eukaryota n.a. n.a. n.a. PMID[17929896]
NPO10538 Aspergillus fumigatus Species Aspergillaceae Eukaryota n.a. n.a. n.a. PMID[19113967]
NPO10538 Aspergillus fumigatus Species Aspergillaceae Eukaryota n.a. n.a. n.a. PMID[19159274]
NPO10538 Aspergillus fumigatus Species Aspergillaceae Eukaryota n.a. n.a. n.a. PMID[19256529]
NPO10538 Aspergillus fumigatus Species Aspergillaceae Eukaryota n.a. isolated from sediment collected using a hand held deep water sampling device at >33 m depth in Vanuatu 2003 PMID[20303767]
NPO10538 Aspergillus fumigatus Species Aspergillaceae Eukaryota n.a. n.a. n.a. PMID[21667925]
NPO10538 Aspergillus fumigatus Species Aspergillaceae Eukaryota n.a. n.a. n.a. PMID[21954885]
NPO10538 Aspergillus fumigatus Species Aspergillaceae Eukaryota n.a. n.a. n.a. PMID[22106303]
NPO10538 Aspergillus fumigatus Species Aspergillaceae Eukaryota stem bark of Melia azedarach n.a. n.a. PMID[22409377]
NPO10538 Aspergillus fumigatus Species Aspergillaceae Eukaryota n.a. n.a. n.a. PMID[23557488]
NPO10538 Aspergillus fumigatus Species Aspergillaceae Eukaryota n.a. n.a. n.a. PMID[23563483]
NPO41486 Streptomyces bullii + Aspergillus fumigatus Species n.a. n.a. n.a. n.a. n.a. PMID[31953204]
NPO10538 Aspergillus fumigatus Species Aspergillaceae Eukaryota n.a. n.a. n.a. PMID[7622436]
NPO10538 Aspergillus fumigatus Species Aspergillaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO10538 Aspergillus fumigatus Species Aspergillaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT1422 Individual Protein ATP-binding cassette sub-family G member 2 Homo sapiens Fluorescence intensity = 315.0 a.u. PMID[550180]
NPT393 Cell Line HCT-116 Homo sapiens Activity = 60.0 % PMID[550180]
NPT1422 Individual Protein ATP-binding cassette sub-family G member 2 Homo sapiens Activity = 274.5 % PMID[550181]
NPT1422 Individual Protein ATP-binding cassette sub-family G member 2 Homo sapiens IC50 > 11000.0 nM PMID[550182]
NPT1422 Individual Protein ATP-binding cassette sub-family G member 2 Homo sapiens Inhibition = 100.0 % PMID[550182]
NPT111 Cell Line K562 Homo sapiens IC50 = 41000.0 nM PMID[550183]
NPT1422 Individual Protein ATP-binding cassette sub-family G member 2 Homo sapiens Ratio = 1.9 n.a. PMID[550184]
NPT1422 Individual Protein ATP-binding cassette sub-family G member 2 Homo sapiens Ratio = 6.0 n.a. PMID[550184]
NPT1422 Individual Protein ATP-binding cassette sub-family G member 2 Homo sapiens IC50 = 800.0 nM PMID[550186]
NPT1422 Individual Protein ATP-binding cassette sub-family G member 2 Homo sapiens Ratio IC50 = 0.83 n.a. PMID[550188]
NPT1422 Individual Protein ATP-binding cassette sub-family G member 2 Homo sapiens Ratio IC50 = 1.03 n.a. PMID[550188]
NPT368 Cell Line SN12C Homo sapiens GI50 n.a. 100000.0 nM PMID[550189]
NPT369 Cell Line ACHN Homo sapiens GI50 n.a. 55975.76 nM PMID[550189]
NPT370 Cell Line NCI-H23 Homo sapiens GI50 n.a. 100000.0 nM PMID[550189]
NPT371 Cell Line UO-31 Homo sapiens GI50 n.a. 100000.0 nM PMID[550189]
NPT116 Cell Line HL-60 Homo sapiens GI50 n.a. 100000.0 nM PMID[550189]
NPT372 Cell Line HOP-92 Homo sapiens GI50 n.a. 38725.76 nM PMID[550189]
NPT90 Cell Line DU-145 Homo sapiens GI50 n.a. 100000.0 nM PMID[550189]
NPT374 Cell Line SF-539 Homo sapiens GI50 n.a. 29580.12 nM PMID[550189]
NPT375 Cell Line Malme-3M Homo sapiens GI50 n.a. 78342.96 nM PMID[550189]
NPT376 Cell Line A498 Homo sapiens GI50 n.a. 100000.0 nM PMID[550189]
NPT111 Cell Line K562 Homo sapiens GI50 n.a. 100000.0 nM PMID[550189]
NPT377 Cell Line OVCAR-3 Homo sapiens GI50 n.a. 100000.0 nM PMID[550189]
NPT112 Cell Line MOLT-4 Homo sapiens GI50 n.a. 100000.0 nM PMID[550189]
NPT378 Cell Line NCI/ADR-RES Homo sapiens GI50 n.a. 100000.0 nM PMID[550189]
NPT379 Cell Line HOP-62 Homo sapiens GI50 n.a. 46989.41 nM PMID[550189]
NPT380 Cell Line U-251 Homo sapiens GI50 n.a. 73113.91 nM PMID[550189]
NPT382 Cell Line OVCAR-5 Homo sapiens GI50 n.a. 100000.0 nM PMID[550189]
NPT381 Cell Line OVCAR-8 Homo sapiens GI50 n.a. 64416.93 nM PMID[550189]
NPT82 Cell Line MDA-MB-231 Homo sapiens GI50 n.a. 70794.58 nM PMID[550189]
NPT383 Cell Line SNB-19 Homo sapiens GI50 n.a. 100000.0 nM PMID[550189]
NPT385 Cell Line SR Homo sapiens GI50 n.a. 100000.0 nM PMID[550189]
NPT384 Cell Line TK-10 Homo sapiens GI50 n.a. 29107.17 nM PMID[550189]
NPT323 Cell Line SW-620 Homo sapiens GI50 n.a. 100000.0 nM PMID[550189]
NPT455 Cell Line NCI-H522 Homo sapiens GI50 n.a. 100000.0 nM PMID[550189]
NPT386 Cell Line KM12 Homo sapiens GI50 n.a. 100000.0 nM PMID[550189]
NPT387 Cell Line M14 Homo sapiens GI50 n.a. 100000.0 nM PMID[550189]
NPT388 Cell Line NCI-H322M Homo sapiens GI50 n.a. 100000.0 nM PMID[550189]
NPT389 Cell Line RPMI-8226 Homo sapiens GI50 n.a. 100000.0 nM PMID[550189]
NPT456 Cell Line OVCAR-4 Homo sapiens GI50 n.a. 100000.0 nM PMID[550189]
NPT390 Cell Line LOX IMVI Homo sapiens GI50 n.a. 100000.0 nM PMID[550189]
NPT457 Cell Line BT-549 Homo sapiens GI50 n.a. 100000.0 nM PMID[550189]
NPT147 Cell Line SK-MEL-2 Homo sapiens GI50 n.a. 100000.0 nM PMID[550189]
NPT391 Cell Line HCC 2998 Homo sapiens GI50 n.a. 37153.52 nM PMID[550189]
NPT81 Cell Line A549 Homo sapiens GI50 n.a. 100000.0 nM PMID[550189]
NPT392 Cell Line SNB-75 Homo sapiens GI50 n.a. 21677.04 nM PMID[550189]
NPT148 Cell Line HCT-15 Homo sapiens GI50 n.a. 100000.0 nM PMID[550189]
NPT393 Cell Line HCT-116 Homo sapiens GI50 n.a. 100000.0 nM PMID[550189]
NPT395 Cell Line SF-268 Homo sapiens GI50 n.a. 43954.16 nM PMID[550189]
NPT306 Cell Line PC-3 Homo sapiens GI50 n.a. 100000.0 nM PMID[550189]
NPT394 Cell Line EKVX Homo sapiens GI50 n.a. 100000.0 nM PMID[550189]
NPT83 Cell Line MCF7 Homo sapiens GI50 n.a. 100000.0 nM PMID[550189]
NPT146 Cell Line SK-OV-3 Homo sapiens GI50 n.a. 29580.12 nM PMID[550189]
NPT397 Cell Line NCI-H460 Homo sapiens GI50 n.a. 100000.0 nM PMID[550189]
NPT396 Cell Line T47D Homo sapiens GI50 n.a. 100000.0 nM PMID[550189]
NPT398 Cell Line UACC-62 Homo sapiens GI50 n.a. 87498.38 nM PMID[550189]
NPT400 Cell Line MDA-MB-435 Homo sapiens GI50 n.a. 100000.0 nM PMID[550189]
NPT308 Cell Line CAKI-1 Homo sapiens GI50 n.a. 100000.0 nM PMID[550189]
NPT458 Cell Line IGROV-1 Homo sapiens GI50 n.a. 100000.0 nM PMID[550189]
NPT399 Cell Line SF-295 Homo sapiens GI50 n.a. 51286.14 nM PMID[550189]
NPT401 Cell Line 786-0 Homo sapiens GI50 n.a. 47973.34 nM PMID[550189]
NPT402 Cell Line Hs-578T Homo sapiens GI50 n.a. 50933.09 nM PMID[550189]
NPT403 Cell Line UACC-257 Homo sapiens GI50 n.a. 100000.0 nM PMID[550189]
NPT404 Cell Line CCRF-CEM Homo sapiens GI50 n.a. 100000.0 nM PMID[550189]
NPT405 Cell Line NCI-H226 Homo sapiens GI50 n.a. 100000.0 nM PMID[550189]
NPT170 Cell Line SK-MEL-28 Homo sapiens GI50 n.a. 22181.96 nM PMID[550189]
NPT139 Cell Line HT-29 Homo sapiens GI50 n.a. 100000.0 nM PMID[550189]
NPT406 Cell Line RXF 393 Homo sapiens GI50 n.a. 38106.58 nM PMID[550189]
NPT407 Cell Line COLO 205 Homo sapiens GI50 n.a. 100000.0 nM PMID[550189]
NPT83 Cell Line MCF7 Homo sapiens Activity = 0.81 % PMID[550190]
NPT1422 Individual Protein ATP-binding cassette sub-family G member 2 Homo sapiens Ki = 1300.0 nM PMID[550196]
NPT1422 Individual Protein ATP-binding cassette sub-family G member 2 Homo sapiens IC50 = 731.0 nM PMID[550198]
NPT1422 Individual Protein ATP-binding cassette sub-family G member 2 Homo sapiens Imax = 100.0 % PMID[550198]
NPT1422 Individual Protein ATP-binding cassette sub-family G member 2 Homo sapiens IC50 = 730.0 nM PMID[550199]
NPT1422 Individual Protein ATP-binding cassette sub-family G member 2 Homo sapiens IC50 = 960.0 nM PMID[550200]
NPT1422 Individual Protein ATP-binding cassette sub-family G member 2 Homo sapiens IC50 = 321.0 nM PMID[550203]
NPT397 Cell Line NCI-H460 Homo sapiens IC50 = 148.0 nM PMID[550203]
NPT397 Cell Line NCI-H460 Homo sapiens IC50 = 168.0 nM PMID[550203]
NPT397 Cell Line NCI-H460 Homo sapiens IC50 = 186.0 nM PMID[550203]
NPT1422 Individual Protein ATP-binding cassette sub-family G member 2 Homo sapiens IC50 = 451.0 nM PMID[550203]
NPT1422 Individual Protein ATP-binding cassette sub-family G member 2 Homo sapiens IC50 = 612.0 nM PMID[550203]
NPT1422 Individual Protein ATP-binding cassette sub-family G member 2 Homo sapiens IC50 = 731.0 nM PMID[550204]
NPT1422 Individual Protein ATP-binding cassette sub-family G member 2 Homo sapiens EC50 = 1000.0 nM PMID[550206]
NPT1422 Individual Protein ATP-binding cassette sub-family G member 2 Homo sapiens IC50 = 1483.0 nM PMID[550208]
NPT1594 Individual Protein Multidrug resistance-associated protein 1 Homo sapiens Inhibition <= 10.0 % PMID[550208]
NPT668 Individual Protein P-glycoprotein 1 Homo sapiens Inhibition = 0.8 % PMID[550182]
NPT668 Individual Protein P-glycoprotein 1 Homo sapiens Inhibition = 22.0 % PMID[550182]
NPT312 Organism Saccharomyces cerevisiae Saccharomyces cerevisiae IZ = 0.0 mm PMID[550185]
NPT1769 Organism Mythimna separata Mythimna separata AFI = 15.0 % PMID[550197]
NPT176 Organism Artemia salina Artemia salina LC50 = 40.5 ug.mL-1 PMID[550197]
NPT1203 Organism Fusarium graminearum Fusarium graminearum MIC = 12.5 ug.mL-1 PMID[550197]
NPT2648 Organism Fusarium oxysporum f. sp. vasinfectum Fusarium oxysporum f. sp. vasinfectum MIC = 50.0 ug.mL-1 PMID[550197]
NPT5164 Organism Fusarium oxysporum f. sp. niveum Fusarium oxysporum f. sp. niveum MIC = 25.0 ug.mL-1 PMID[550197]
NPT2600 Organism Fusarium solani Fusarium solani MIC = 50.0 ug.mL-1 PMID[550197]
NPT562 Organism Colletotrichum gloeosporioides Colletotrichum gloeosporioides MIC = 12.5 ug.mL-1 PMID[550197]
NPT962 Organism Alternaria alternata Alternaria alternata MIC = 12.5 ug.mL-1 PMID[550197]
NPT2705 Organism Alternaria solani Alternaria solani MIC = 25.0 ug.mL-1 PMID[550197]
NPT635 Organism Botryotinia fuckeliana Botryotinia fuckeliana MIC = 12.5 ug.mL-1 PMID[550197]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. IC50 = 0.82 nM PMID[550201]
NPT2 Others Unspecified IC50 = 5.42 nM PMID[550201]
NPT2 Others Unspecified Ratio = 7.0 n.a. PMID[550201]
NPT2 Others Unspecified Ratio IC50 = 2.85 n.a. PMID[550203]
NPT2 Others Unspecified Ratio IC50 = 1.49 n.a. PMID[550203]
NPT2 Others Unspecified Ratio IC50 = 2.1 n.a. PMID[550203]
NPT173 Organism Klebsiella pneumoniae Klebsiella pneumoniae Inhibition = -0.45 % PMID[550205]
NPT19 Organism Escherichia coli Escherichia coli Inhibition = 5.9 % PMID[550205]
NPT18 Organism Pseudomonas aeruginosa Pseudomonas aeruginosa Inhibition = 5.98 % PMID[550205]
NPT20 Organism Candida albicans Candida albicans Inhibition = 1.52 % PMID[550205]
NPT85 Organism Filobasidiella neoformans Cryptococcus neoformans Inhibition = -5.88 % PMID[550205]
NPT2922 Organism Staphylococcus aureus subsp. aureus Staphylococcus aureus subsp. aureus Inhibition = -0.07 % PMID[550205]
NPT747 Organism Acinetobacter baumannii Acinetobacter baumannii Inhibition = 0.14 % PMID[550205]
NPT2 Others Unspecified Activity = 100.0 % PMID[550207]
NPT668 Individual Protein P-glycoprotein 1 Homo sapiens EC50 = 412.0 nM PMID[550208]
NPT668 Individual Protein P-glycoprotein 1 Homo sapiens Emax = -20.0 % PMID[550208]
NPT668 Individual Protein P-glycoprotein 1 Homo sapiens IC50 = 1808.0 nM PMID[550208]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC305984 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9347 High Similarity NPC303658
0.9187 High Similarity NPC184680
0.9143 High Similarity NPC470785
0.9143 High Similarity NPC470784
0.9034 High Similarity NPC194740
0.8867 High Similarity NPC148183
0.8867 High Similarity NPC152768
0.8798 High Similarity NPC21638
0.8676 High Similarity NPC469592
0.8676 High Similarity NPC471080
0.8627 High Similarity NPC264176
0.8599 High Similarity NPC473041
0.8525 High Similarity NPC474183
0.851 High Similarity NPC469594
0.8498 Intermediate Similarity NPC471762
0.845 Intermediate Similarity NPC329747
0.8431 Intermediate Similarity NPC475910
0.8411 Intermediate Similarity NPC311906
0.8366 Intermediate Similarity NPC295898
0.8357 Intermediate Similarity NPC472098
0.8341 Intermediate Similarity NPC323969
0.8326 Intermediate Similarity NPC66777
0.8302 Intermediate Similarity NPC60621
0.8299 Intermediate Similarity NPC84478
0.8273 Intermediate Similarity NPC101350
0.8261 Intermediate Similarity NPC471304
0.8257 Intermediate Similarity NPC473105
0.8255 Intermediate Similarity NPC472099
0.8227 Intermediate Similarity NPC235685
0.8224 Intermediate Similarity NPC122436
0.8213 Intermediate Similarity NPC469589
0.8194 Intermediate Similarity NPC478078
0.8173 Intermediate Similarity NPC167860
0.8173 Intermediate Similarity NPC123976
0.817 Intermediate Similarity NPC81939
0.816 Intermediate Similarity NPC96321
0.8137 Intermediate Similarity NPC232727
0.8133 Intermediate Similarity NPC475666
0.8116 Intermediate Similarity NPC249583
0.8116 Intermediate Similarity NPC4687
0.8108 Intermediate Similarity NPC131486
0.8107 Intermediate Similarity NPC285558
0.8088 Intermediate Similarity NPC329793
0.8079 Intermediate Similarity NPC306376
0.8073 Intermediate Similarity NPC161861
0.8066 Intermediate Similarity NPC330009
0.804 Intermediate Similarity NPC196251
0.804 Intermediate Similarity NPC102338
0.804 Intermediate Similarity NPC111602
0.804 Intermediate Similarity NPC63199
0.8028 Intermediate Similarity NPC157931
0.8 Intermediate Similarity NPC472112
0.8 Intermediate Similarity NPC260434
0.7991 Intermediate Similarity NPC133609
0.7962 Intermediate Similarity NPC87413
0.7957 Intermediate Similarity NPC189079
0.7953 Intermediate Similarity NPC193267
0.7953 Intermediate Similarity NPC213530
0.7952 Intermediate Similarity NPC174758
0.7943 Intermediate Similarity NPC270918
0.7925 Intermediate Similarity NPC308137
0.7925 Intermediate Similarity NPC310211
0.7921 Intermediate Similarity NPC472113
0.7911 Intermediate Similarity NPC475816
0.7904 Intermediate Similarity NPC63971
0.7904 Intermediate Similarity NPC91868
0.7902 Intermediate Similarity NPC72211
0.7888 Intermediate Similarity NPC303374
0.7885 Intermediate Similarity NPC476098
0.788 Intermediate Similarity NPC198503
0.7876 Intermediate Similarity NPC477066
0.786 Intermediate Similarity NPC169402
0.7854 Intermediate Similarity NPC70956
0.7854 Intermediate Similarity NPC243834
0.785 Intermediate Similarity NPC116238
0.7845 Intermediate Similarity NPC244543
0.7841 Intermediate Similarity NPC478081
0.7841 Intermediate Similarity NPC477067
0.7841 Intermediate Similarity NPC478082
0.7834 Intermediate Similarity NPC150239
0.7833 Intermediate Similarity NPC204970
0.7826 Intermediate Similarity NPC312870
0.7826 Intermediate Similarity NPC254240
0.7826 Intermediate Similarity NPC128265
0.7826 Intermediate Similarity NPC199851
0.7826 Intermediate Similarity NPC294909
0.7814 Intermediate Similarity NPC170114
0.7805 Intermediate Similarity NPC70259
0.7799 Intermediate Similarity NPC223427
0.7789 Intermediate Similarity NPC176127
0.7787 Intermediate Similarity NPC284685
0.7767 Intermediate Similarity NPC470549
0.7763 Intermediate Similarity NPC280272
0.7756 Intermediate Similarity NPC205934
0.7756 Intermediate Similarity NPC43787
0.7756 Intermediate Similarity NPC131017
0.7748 Intermediate Similarity NPC314954
0.7742 Intermediate Similarity NPC247803
0.7742 Intermediate Similarity NPC46561
0.7742 Intermediate Similarity NPC264285
0.774 Intermediate Similarity NPC249040
0.7739 Intermediate Similarity NPC469734
0.7738 Intermediate Similarity NPC319232
0.7738 Intermediate Similarity NPC24370
0.7736 Intermediate Similarity NPC39679
0.7731 Intermediate Similarity NPC183407
0.7731 Intermediate Similarity NPC274982
0.7731 Intermediate Similarity NPC322064
0.7729 Intermediate Similarity NPC100863
0.7723 Intermediate Similarity NPC475720
0.7723 Intermediate Similarity NPC474192
0.7714 Intermediate Similarity NPC162484
0.7713 Intermediate Similarity NPC326363
0.7706 Intermediate Similarity NPC208084
0.7706 Intermediate Similarity NPC17437
0.7703 Intermediate Similarity NPC476044
0.7703 Intermediate Similarity NPC261251
0.7703 Intermediate Similarity NPC304307
0.7703 Intermediate Similarity NPC257851
0.7703 Intermediate Similarity NPC118559
0.7703 Intermediate Similarity NPC34580
0.7703 Intermediate Similarity NPC124920
0.7702 Intermediate Similarity NPC53534
0.77 Intermediate Similarity NPC174672
0.7688 Intermediate Similarity NPC91179
0.7688 Intermediate Similarity NPC469896
0.7686 Intermediate Similarity NPC473540
0.7682 Intermediate Similarity NPC220851
0.7671 Intermediate Similarity NPC128115
0.7671 Intermediate Similarity NPC477533
0.7671 Intermediate Similarity NPC174760
0.7668 Intermediate Similarity NPC100547
0.7667 Intermediate Similarity NPC291535
0.7667 Intermediate Similarity NPC475085
0.7667 Intermediate Similarity NPC475112
0.7658 Intermediate Similarity NPC214142
0.7656 Intermediate Similarity NPC176538
0.7655 Intermediate Similarity NPC39370
0.765 Intermediate Similarity NPC469928
0.7644 Intermediate Similarity NPC473186
0.7642 Intermediate Similarity NPC45190
0.7642 Intermediate Similarity NPC472111
0.7642 Intermediate Similarity NPC300156
0.7639 Intermediate Similarity NPC478074
0.7638 Intermediate Similarity NPC72980
0.7636 Intermediate Similarity NPC310118
0.7634 Intermediate Similarity NPC322135
0.7634 Intermediate Similarity NPC223409
0.7634 Intermediate Similarity NPC95240
0.7633 Intermediate Similarity NPC245916
0.7633 Intermediate Similarity NPC13880
0.7627 Intermediate Similarity NPC478083
0.7626 Intermediate Similarity NPC288987
0.7625 Intermediate Similarity NPC88923
0.7625 Intermediate Similarity NPC100734
0.7625 Intermediate Similarity NPC315634
0.7623 Intermediate Similarity NPC473185
0.7621 Intermediate Similarity NPC473187
0.7619 Intermediate Similarity NPC267423
0.7619 Intermediate Similarity NPC78609
0.761 Intermediate Similarity NPC92111
0.7602 Intermediate Similarity NPC16352
0.76 Intermediate Similarity NPC14288
0.7598 Intermediate Similarity NPC175474
0.7593 Intermediate Similarity NPC94157
0.7583 Intermediate Similarity NPC152620
0.7577 Intermediate Similarity NPC325976
0.7574 Intermediate Similarity NPC258480
0.7566 Intermediate Similarity NPC54803
0.7566 Intermediate Similarity NPC321592
0.7566 Intermediate Similarity NPC469554
0.7561 Intermediate Similarity NPC76748
0.7559 Intermediate Similarity NPC476106
0.7546 Intermediate Similarity NPC146418
0.7545 Intermediate Similarity NPC473179
0.7536 Intermediate Similarity NPC307963
0.7534 Intermediate Similarity NPC179287
0.7533 Intermediate Similarity NPC323198
0.7533 Intermediate Similarity NPC284888
0.7533 Intermediate Similarity NPC323752
0.7523 Intermediate Similarity NPC477979
0.7523 Intermediate Similarity NPC321428
0.7523 Intermediate Similarity NPC193777
0.7523 Intermediate Similarity NPC50562
0.7522 Intermediate Similarity NPC475253
0.7512 Intermediate Similarity NPC296527
0.7511 Intermediate Similarity NPC478080
0.75 Intermediate Similarity NPC199277
0.75 Intermediate Similarity NPC220151
0.75 Intermediate Similarity NPC135887
0.75 Intermediate Similarity NPC19692
0.75 Intermediate Similarity NPC33064
0.75 Intermediate Similarity NPC245055
0.75 Intermediate Similarity NPC66210
0.7489 Intermediate Similarity NPC26543
0.7489 Intermediate Similarity NPC67658
0.7489 Intermediate Similarity NPC3207
0.7489 Intermediate Similarity NPC196718
0.7489 Intermediate Similarity NPC101543
0.7488 Intermediate Similarity NPC82548

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC305984 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.8905 High Similarity NPD4885 Approved
0.8341 Intermediate Similarity NPD5658 Approved
0.8178 Intermediate Similarity NPD6824 Clinical (unspecified phase)
0.8048 Intermediate Similarity NPD6567 Clinical (unspecified phase)
0.8028 Intermediate Similarity NPD7823 Clinical (unspecified phase)
0.7951 Intermediate Similarity NPD4118 Clinical (unspecified phase)
0.7911 Intermediate Similarity NPD2921 Clinical (unspecified phase)
0.7826 Intermediate Similarity NPD4501 Approved
0.7826 Intermediate Similarity NPD4558 Phase 2
0.7826 Intermediate Similarity NPD4500 Approved
0.782 Intermediate Similarity NPD2916 Discontinued
0.7797 Intermediate Similarity NPD6790 Phase 1
0.7787 Intermediate Similarity NPD7955 Approved
0.7787 Intermediate Similarity NPD7956 Approved
0.7767 Intermediate Similarity NPD5293 Phase 2
0.7742 Intermediate Similarity NPD8405 Clinical (unspecified phase)
0.7725 Intermediate Similarity NPD3003 Approved
0.7716 Intermediate Similarity NPD5482 Discontinued
0.7713 Intermediate Similarity NPD5479 Discontinued
0.7706 Intermediate Similarity NPD8358 Approved
0.7692 Intermediate Similarity NPD4926 Clinical (unspecified phase)
0.7675 Intermediate Similarity NPD8016 Phase 3
0.7675 Intermediate Similarity NPD8017 Clinical (unspecified phase)
0.767 Intermediate Similarity NPD6861 Clinical (unspecified phase)
0.7661 Intermediate Similarity NPD5632 Approved
0.7658 Intermediate Similarity NPD7426 Phase 1
0.7626 Intermediate Similarity NPD7194 Discontinued
0.7625 Intermediate Similarity NPD7803 Approved
0.7619 Intermediate Similarity NPD5483 Clinical (unspecified phase)
0.7608 Intermediate Similarity NPD1768 Approved
0.7594 Intermediate Similarity NPD4795 Phase 2
0.7591 Intermediate Similarity NPD6242 Discontinued
0.7585 Intermediate Similarity NPD3324 Clinical (unspecified phase)
0.7578 Intermediate Similarity NPD7603 Discontinued
0.7559 Intermediate Similarity NPD8403 Phase 1
0.7556 Intermediate Similarity NPD4952 Phase 3
0.7546 Intermediate Similarity NPD7470 Discontinued
0.7536 Intermediate Similarity NPD1038 Approved
0.7536 Intermediate Similarity NPD1304 Clinical (unspecified phase)
0.7512 Intermediate Similarity NPD3946 Clinical (unspecified phase)
0.7511 Intermediate Similarity NPD5559 Phase 2
0.7511 Intermediate Similarity NPD4958 Clinical (unspecified phase)
0.75 Intermediate Similarity NPD6568 Discontinued
0.7488 Intermediate Similarity NPD6376 Discontinued
0.7488 Intermediate Similarity NPD1739 Approved
0.7488 Intermediate Similarity NPD1740 Approved
0.7488 Intermediate Similarity NPD4600 Approved
0.7488 Intermediate Similarity NPD4601 Approved
0.7458 Intermediate Similarity NPD7708 Approved
0.7456 Intermediate Similarity NPD4373 Phase 2
0.7446 Intermediate Similarity NPD7025 Clinical (unspecified phase)
0.7444 Intermediate Similarity NPD6160 Clinical (unspecified phase)
0.7443 Intermediate Similarity NPD5902 Approved
0.7443 Intermediate Similarity NPD5903 Approved
0.7435 Intermediate Similarity NPD4368 Phase 2
0.7416 Intermediate Similarity NPD4418 Discontinued
0.7406 Intermediate Similarity NPD8255 Phase 2
0.7391 Intermediate Similarity NPD4499 Approved
0.7389 Intermediate Similarity NPD3259 Approved
0.7389 Intermediate Similarity NPD4203 Approved
0.7389 Intermediate Similarity NPD4204 Approved
0.7388 Intermediate Similarity NPD8364 Approved
0.7388 Intermediate Similarity NPD8363 Approved
0.7371 Intermediate Similarity NPD8459 Approved
0.7371 Intermediate Similarity NPD8460 Approved
0.7362 Intermediate Similarity NPD8359 Phase 2
0.7361 Intermediate Similarity NPD6838 Clinical (unspecified phase)
0.7361 Intermediate Similarity NPD1392 Approved
0.7342 Intermediate Similarity NPD6985 Discontinued
0.7336 Intermediate Similarity NPD6263 Clinical (unspecified phase)
0.7336 Intermediate Similarity NPD5450 Discontinued
0.7328 Intermediate Similarity NPD8365 Clinical (unspecified phase)
0.7327 Intermediate Similarity NPD2510 Approved
0.7327 Intermediate Similarity NPD2509 Approved
0.7315 Intermediate Similarity NPD5601 Phase 2
0.7308 Intermediate Similarity NPD6517 Phase 3
0.7299 Intermediate Similarity NPD5512 Phase 3
0.7295 Intermediate Similarity NPD6393 Clinical (unspecified phase)
0.7285 Intermediate Similarity NPD5417 Clinical (unspecified phase)
0.7281 Intermediate Similarity NPD7222 Phase 2
0.728 Intermediate Similarity NPD8466 Approved
0.728 Intermediate Similarity NPD8467 Approved
0.728 Intermediate Similarity NPD8465 Approved
0.7277 Intermediate Similarity NPD5930 Phase 3
0.7261 Intermediate Similarity NPD7796 Approved
0.7261 Intermediate Similarity NPD7797 Approved
0.7253 Intermediate Similarity NPD7729 Clinical (unspecified phase)
0.7252 Intermediate Similarity NPD3389 Approved
0.7252 Intermediate Similarity NPD3394 Approved
0.7252 Intermediate Similarity NPD3393 Approved
0.725 Intermediate Similarity NPD8463 Approved
0.7249 Intermediate Similarity NPD7589 Clinical (unspecified phase)
0.7246 Intermediate Similarity NPD5256 Discontinued
0.7243 Intermediate Similarity NPD484 Approved
0.7241 Intermediate Similarity NPD3006 Discontinued
0.7237 Intermediate Similarity NPD7994 Phase 2
0.7235 Intermediate Similarity NPD3507 Phase 2
0.7231 Intermediate Similarity NPD8091 Phase 3
0.723 Intermediate Similarity NPD4987 Clinical (unspecified phase)
0.7229 Intermediate Similarity NPD7558 Phase 2
0.7229 Intermediate Similarity NPD6741 Clinical (unspecified phase)
0.7217 Intermediate Similarity NPD7284 Clinical (unspecified phase)
0.7212 Intermediate Similarity NPD6209 Approved
0.7212 Intermediate Similarity NPD7221 Approved
0.7212 Intermediate Similarity NPD6995 Phase 1
0.7212 Intermediate Similarity NPD6141 Clinical (unspecified phase)
0.7212 Intermediate Similarity NPD7219 Approved
0.7207 Intermediate Similarity NPD3257 Approved
0.7206 Intermediate Similarity NPD7393 Clinical (unspecified phase)
0.7204 Intermediate Similarity NPD802 Phase 2
0.72 Intermediate Similarity NPD5070 Clinical (unspecified phase)
0.7198 Intermediate Similarity NPD6344 Clinical (unspecified phase)
0.7198 Intermediate Similarity NPD6964 Approved
0.7198 Intermediate Similarity NPD6963 Approved
0.7195 Intermediate Similarity NPD8284 Discontinued
0.7183 Intermediate Similarity NPD5003 Discontinued
0.7176 Intermediate Similarity NPD7690 Clinical (unspecified phase)
0.7175 Intermediate Similarity NPD5612 Discontinued
0.7167 Intermediate Similarity NPD7853 Phase 2
0.7165 Intermediate Similarity NPD8425 Approved
0.7165 Intermediate Similarity NPD8426 Approved
0.7164 Intermediate Similarity NPD5183 Approved
0.7164 Intermediate Similarity NPD5186 Approved
0.7162 Intermediate Similarity NPD3945 Discontinued
0.7161 Intermediate Similarity NPD6716 Phase 1
0.7156 Intermediate Similarity NPD4862 Clinical (unspecified phase)
0.7156 Intermediate Similarity NPD5530 Phase 1
0.7156 Intermediate Similarity NPD3258 Approved
0.7155 Intermediate Similarity NPD5040 Clinical (unspecified phase)
0.7143 Intermediate Similarity NPD7688 Phase 1
0.7143 Intermediate Similarity NPD8427 Approved
0.7143 Intermediate Similarity NPD8429 Approved
0.7143 Intermediate Similarity NPD8428 Approved
0.7136 Intermediate Similarity NPD6449 Clinical (unspecified phase)
0.713 Intermediate Similarity NPD4897 Phase 2
0.7123 Intermediate Similarity NPD7452 Approved
0.7123 Intermediate Similarity NPD7453 Approved
0.7122 Intermediate Similarity NPD3920 Phase 2
0.7117 Intermediate Similarity NPD3815 Phase 1
0.7117 Intermediate Similarity NPD3816 Phase 1
0.7116 Intermediate Similarity NPD3825 Phase 3
0.7111 Intermediate Similarity NPD4429 Discontinued
0.711 Intermediate Similarity NPD5426 Phase 3
0.7109 Intermediate Similarity NPD5913 Phase 3
0.7109 Intermediate Similarity NPD5912 Clinical (unspecified phase)
0.7105 Intermediate Similarity NPD7547 Clinical (unspecified phase)
0.7104 Intermediate Similarity NPD4900 Clinical (unspecified phase)
0.7103 Intermediate Similarity NPD6769 Clinical (unspecified phase)
0.7103 Intermediate Similarity NPD7948 Phase 1
0.71 Intermediate Similarity NPD6969 Phase 2
0.71 Intermediate Similarity NPD6968 Phase 2
0.71 Intermediate Similarity NPD1659 Phase 1
0.7095 Intermediate Similarity NPD5620 Clinical (unspecified phase)
0.7095 Intermediate Similarity NPD6608 Clinical (unspecified phase)
0.7094 Intermediate Similarity NPD5861 Clinical (unspecified phase)
0.7091 Intermediate Similarity NPD2189 Approved
0.7091 Intermediate Similarity NPD2187 Approved
0.7089 Intermediate Similarity NPD4602 Approved
0.7087 Intermediate Similarity NPD7268 Clinical (unspecified phase)
0.7078 Intermediate Similarity NPD7174 Clinical (unspecified phase)
0.7075 Intermediate Similarity NPD4372 Phase 1
0.7075 Intermediate Similarity NPD6569 Phase 2
0.7072 Intermediate Similarity NPD4502 Phase 2
0.7064 Intermediate Similarity NPD6176 Phase 1
0.7056 Intermediate Similarity NPD7710 Clinical (unspecified phase)
0.7054 Intermediate Similarity NPD6525 Clinical (unspecified phase)
0.7054 Intermediate Similarity NPD6243 Phase 3
0.7054 Intermediate Similarity NPD6244 Phase 3
0.7051 Intermediate Similarity NPD2951 Discontinued
0.7049 Intermediate Similarity NPD6961 Discontinued
0.7043 Intermediate Similarity NPD3263 Phase 3
0.704 Intermediate Similarity NPD7594 Clinical (unspecified phase)
0.704 Intermediate Similarity NPD7069 Discontinued
0.7037 Intermediate Similarity NPD4548 Discontinued
0.7033 Intermediate Similarity NPD6530 Approved
0.7033 Intermediate Similarity NPD6531 Approved
0.703 Intermediate Similarity NPD2844 Phase 3
0.7022 Intermediate Similarity NPD2433 Clinical (unspecified phase)
0.7018 Intermediate Similarity NPD5669 Clinical (unspecified phase)
0.7014 Intermediate Similarity NPD7665 Phase 2
0.7014 Intermediate Similarity NPD7666 Phase 3
0.7013 Intermediate Similarity NPD7731 Approved
0.7013 Intermediate Similarity NPD7730 Approved
0.7012 Intermediate Similarity NPD8102 Discontinued
0.7009 Intermediate Similarity NPD3810 Clinical (unspecified phase)
0.7009 Intermediate Similarity NPD7953 Approved
0.7009 Intermediate Similarity NPD7951 Approved
0.7009 Intermediate Similarity NPD7790 Approved
0.7009 Intermediate Similarity NPD3243 Approved
0.7009 Intermediate Similarity NPD7952 Approved
0.7009 Intermediate Similarity NPD7571 Clinical (unspecified phase)
0.7009 Intermediate Similarity NPD7950 Approved
0.7009 Intermediate Similarity NPD7789 Approved
0.7009 Intermediate Similarity NPD7791 Approved
0.7008 Intermediate Similarity NPD8247 Approved
0.7008 Intermediate Similarity NPD8246 Approved
0.7 Intermediate Similarity NPD6247 Clinical (unspecified phase)
0.7 Intermediate Similarity NPD7271 Approved
0.7 Intermediate Similarity NPD5488 Discontinued
0.7 Intermediate Similarity NPD4901 Clinical (unspecified phase)

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data