Structure

Physi-Chem Properties

Molecular Weight:  530.4
Volume:  592.98
LogP:  9.205
LogD:  6.901
LogS:  -6.428
# Rotatable Bonds:  17
TPSA:  72.83
# H-Bond Aceptor:  5
# H-Bond Donor:  1
# Rings:  2
# Heavy Atoms:  5

MedChem Properties

QED Drug-Likeness Score:  0.171
Synthetic Accessibility Score:  3.927
Fsp3:  0.758
Lipinski Rule-of-5:  Rejected
Pfizer Rule:  Rejected
GSK Rule:  Rejected
BMS Rule:  1
Golden Triangle Rule:  Rejected
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -4.783
MDCK Permeability:  1.7282593034906313e-05
Pgp-inhibitor:  0.059
Pgp-substrate:  0.002
Human Intestinal Absorption (HIA):  0.003
20% Bioavailability (F20%):  0.933
30% Bioavailability (F30%):  0.866

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.475
Plasma Protein Binding (PPB):  99.64008331298828%
Volume Distribution (VD):  0.634
Pgp-substrate:  1.7903248071670532%

ADMET: Metabolism

CYP1A2-inhibitor:  0.085
CYP1A2-substrate:  0.188
CYP2C19-inhibitor:  0.14
CYP2C19-substrate:  0.858
CYP2C9-inhibitor:  0.171
CYP2C9-substrate:  0.984
CYP2D6-inhibitor:  0.003
CYP2D6-substrate:  0.111
CYP3A4-inhibitor:  0.137
CYP3A4-substrate:  0.042

ADMET: Excretion

Clearance (CL):  3.558
Half-life (T1/2):  0.176

ADMET: Toxicity

hERG Blockers:  0.002
Human Hepatotoxicity (H-HT):  0.036
Drug-inuced Liver Injury (DILI):  0.368
AMES Toxicity:  0.003
Rat Oral Acute Toxicity:  0.086
Maximum Recommended Daily Dose:  0.057
Skin Sensitization:  0.938
Carcinogencity:  0.052
Eye Corrosion:  0.035
Eye Irritation:  0.111
Respiratory Toxicity:  0.193

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General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs  

  Natural Product: NPC279118

Natural Product ID:  NPC279118
Common Name*:   (+)-Alpha-Tocopheryl Succinate
IUPAC Name:   4-oxo-4-[[(2R)-2,5,7,8-tetramethyl-2-[(4R,8R)-4,8,12-trimethyltridecyl]-3,4-dihydrochromen-6-yl]oxy]butanoic acid
Synonyms:   Alpha-Tocopheryl Succinate
Standard InCHIKey:  IELOKBJPULMYRW-NJQVLOCASA-N
Standard InCHI:  InChI=1S/C33H54O5/c1-22(2)12-9-13-23(3)14-10-15-24(4)16-11-20-33(8)21-19-28-27(7)31(25(5)26(6)32(28)38-33)37-30(36)18-17-29(34)35/h22-24H,9-21H2,1-8H3,(H,34,35)/t23-,24-,33-/m1/s1
SMILES:  CC(C)CCC[C@@H](C)CCC[C@@H](C)CCC[C@]1(C)CCc2c(C)c(c(C)c(C)c2O1)OC(=O)CCC(=O)O
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL81421
PubChem CID:   20353
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000012] Lipids and lipid-like molecules
      • [CHEMONTID:0000259] Prenol lipids
        • [CHEMONTID:0001534] Quinone and hydroquinone lipids
          • [CHEMONTID:0001546] Vitamin E compounds

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO29314 Mangifera indica Species Anacardiaceae Eukaryota n.a. n.a. n.a. DOI[10.1246/bcsj.30.618]
NPO18296 Diospyros kaki Species Ebenaceae Eukaryota n.a. calyx n.a. PMID[21561086]
NPO18296 Diospyros kaki Species Ebenaceae Eukaryota n.a. fruit n.a. PMID[24086493]
NPO7191 Mimosa pudica Species Fabaceae Eukaryota n.a. root n.a. PMID[26661932]
NPO29314 Mangifera indica Species Anacardiaceae Eukaryota n.a. n.a. n.a. PMID[27466882]
NPO29314 Mangifera indica Species Anacardiaceae Eukaryota n.a. n.a. Database[FooDB]
NPO29314 Mangifera indica Species Anacardiaceae Eukaryota Flower n.a. n.a. Database[FooDB]
NPO29314 Mangifera indica Species Anacardiaceae Eukaryota Fruit n.a. n.a. Database[FooDB]
NPO29314 Mangifera indica Species Anacardiaceae Eukaryota Leaf n.a. n.a. Database[FooDB]
NPO29314 Mangifera indica Species Anacardiaceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO29314 Mangifera indica Species Anacardiaceae Eukaryota n.a. n.a. Database[FooDB]
NPO19694 Senecio scandens Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO29314 Mangifera indica Species Anacardiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO7191 Mimosa pudica Species Fabaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO18296 Diospyros kaki Species Ebenaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO29314 Mangifera indica Species Anacardiaceae Eukaryota Fruits n.a. Database[Phenol-Explorer]
NPO18296 Diospyros kaki Species Ebenaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO7191 Mimosa pudica Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO29031 Rhizoma acori graminei n.a. n.a. n.a. n.a. n.a. n.a. Database[TCMID]
NPO19694 Senecio scandens Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO29314 Mangifera indica Species Anacardiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO18296 Diospyros kaki Species Ebenaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO29314 Mangifera indica Species Anacardiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO18296 Diospyros kaki Species Ebenaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO19694 Senecio scandens Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO19694 Senecio scandens Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18296 Diospyros kaki Species Ebenaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO29314 Mangifera indica Species Anacardiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7191 Mimosa pudica Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT83 Cell Line MCF7 Homo sapiens IC50 > 368000.0 nM PMID[536894]
NPT3722 Cell Line 4T1 Mus musculus Inhibition = 50.0 % PMID[536895]
NPT3722 Cell Line 4T1 Mus musculus IC50 = 10000.0 nM PMID[536895]
NPT444 Individual Protein Ubiquitin carboxyl-terminal hydrolase 1 Homo sapiens Potency n.a. 35481.3 nM PMID[536896]
NPT65 Cell Line HepG2 Homo sapiens Activity = 1.8 % PMID[536897]
NPT393 Cell Line HCT-116 Homo sapiens Activity = 54.0 % PMID[536897]
NPT393 Cell Line HCT-116 Homo sapiens Activity = 39.0 % PMID[536897]
NPT65 Cell Line HepG2 Homo sapiens Activity = 2.1 % PMID[536897]
NPT65 Cell Line HepG2 Homo sapiens Activity = 2.9 % PMID[536897]
NPT65 Cell Line HepG2 Homo sapiens Activity = 15.4 % PMID[536897]
NPT65 Cell Line HepG2 Homo sapiens Activity = 33.01 % PMID[536897]
NPT65 Cell Line HepG2 Homo sapiens Activity = 38.4 % PMID[536897]
NPT65 Cell Line HepG2 Homo sapiens Activity = 62.1 % PMID[536897]
NPT65 Cell Line HepG2 Homo sapiens Activity = 27.4 % PMID[536897]
NPT65 Cell Line HepG2 Homo sapiens Activity = 60.0 % PMID[536897]
NPT393 Cell Line HCT-116 Homo sapiens Activity = 2.7 % PMID[536897]
NPT393 Cell Line HCT-116 Homo sapiens Activity = 4.4 % PMID[536897]
NPT393 Cell Line HCT-116 Homo sapiens Activity = 9.5 % PMID[536897]
NPT393 Cell Line HCT-116 Homo sapiens Activity = 13.4 % PMID[536897]
NPT393 Cell Line HCT-116 Homo sapiens Activity = 19.9 % PMID[536897]
NPT393 Cell Line HCT-116 Homo sapiens Activity = 32.7 % PMID[536897]
NPT393 Cell Line HCT-116 Homo sapiens Activity = 47.3 % PMID[536897]
NPT393 Cell Line HCT-116 Homo sapiens Activity = 32.3 % PMID[536897]
NPT393 Cell Line HCT-116 Homo sapiens Activity = 58.7 % PMID[536897]
NPT65 Cell Line HepG2 Homo sapiens IC50 = 55000.0 nM PMID[536897]
NPT393 Cell Line HCT-116 Homo sapiens IC50 = 52300.0 nM PMID[536897]
NPT83 Cell Line MCF7 Homo sapiens Activity = 45.0 % PMID[536897]
NPT65 Cell Line HepG2 Homo sapiens Activity = 55.0 % PMID[536897]
NPT165 Cell Line HeLa Homo sapiens Activity = 65.0 % PMID[536897]
NPT393 Cell Line HCT-116 Homo sapiens Activity = 47.0 % PMID[536897]
NPT83 Cell Line MCF7 Homo sapiens Activity = 14.0 % PMID[536897]
NPT65 Cell Line HepG2 Homo sapiens Activity = 15.0 % PMID[536897]
NPT165 Cell Line HeLa Homo sapiens Activity = 20.0 % PMID[536897]
NPT393 Cell Line HCT-116 Homo sapiens Activity = 48.0 % PMID[536897]
NPT50 Individual Protein Tyrosyl-DNA phosphodiesterase 1 Homo sapiens Potency n.a. 29855.4 nM PMID[536898]
NPT178 Individual Protein Protein-tyrosine phosphatase 1B Homo sapiens IC50 = 25050.0 nM PMID[536902]
NPT178 Individual Protein Protein-tyrosine phosphatase 1B Homo sapiens IC50 = 20000.0 nM PMID[536902]
NPT178 Individual Protein Protein-tyrosine phosphatase 1B Homo sapiens IC50 = 39010.0 nM PMID[536902]
NPT178 Individual Protein Protein-tyrosine phosphatase 1B Homo sapiens IC50 = 45610.0 nM PMID[536902]
NPT163 Individual Protein Nuclear factor NF-kappa-B p105 subunit Homo sapiens Potency n.a. 5558 nM PubChem BioAssay data set
NPT6 Organism Plasmodium falciparum Plasmodium falciparum Potency n.a. 11995.5 nM PMID[536896]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum Potency n.a. 16944.1 nM PMID[536896]
NPT2 Others Unspecified IC50 = 315000.0 nM PMID[536899]
NPT2 Others Unspecified IC50 = 42000.0 nM PMID[536899]
NPT2 Others Unspecified Potency n.a. 15848.9 nM PMID[536898]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. Inhibition = 63.6 % PMID[536900]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. Inhibition = 63.2 % PMID[536900]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. Inhibition = 56.0 % PMID[536900]
NPT566 Organism Salmonella typhimurium Salmonella enterica subsp. enterica serovar Typhimurium Activity = 216.0 n.a. PMID[536900]
NPT19 Organism Escherichia coli Escherichia coli FC = 1.1 n.a. PMID[536900]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. IC50 = 57000.0 nM PMID[536900]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. IC50 = 63000.0 nM PMID[536900]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. IC50 = 245000.0 nM PMID[536900]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. IC50 > 300000.0 nM PMID[536900]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. IC50 = 113000.0 nM PMID[536900]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. IC50 = 66000.0 nM PMID[536900]
NPT32 Organism Mus musculus Mus musculus IC50 = 73000.0 nM PMID[536900]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. IC50 = 50000.0 nM PMID[536900]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. Inhibition = 40.0 % PMID[536900]
NPT26245 SINGLE PROTEIN Glutathione transferase omega 1 Homo sapiens IC50 = 4000.0 nM PMID[536901]
NPT20555 ORGANISM SARS-CoV-2 Severe acute respiratory syndrome coronavirus 2 Inhibition = -1.4 % PMID[536903]
NPT20556 SINGLE PROTEIN Replicase polyprotein 1ab Severe acute respiratory syndrome coronavirus 2 Inhibition = 12.49 % PMID[536904]
NPT20555 ORGANISM SARS-CoV-2 Severe acute respiratory syndrome coronavirus 2 Inhibition = 0.02 % PMID[536905]
NPT2 Others Unspecified Potency n.a. 7850.9 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 22126.9 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 29849.3 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 26832.5 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 8485.2 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 69357.6 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 23710.1 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 21932.8 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 27815.9 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 13838.7 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 19720.6 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 6181.5 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 33491.5 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 39347.8 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 55092.7 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 14960.1 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 9883.7 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 10682.2 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 77820.5 nM PubChem BioAssay data set
NPT74 Individual Protein Proto-oncogene c-JUN Homo sapiens Potency n.a. 24826.8 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 62362 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 1972.1 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 15664.6 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 27611.8 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 2785.6 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 13448.1 nM PubChem BioAssay data set

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC279118 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9237 High Similarity NPC238075
0.9187 High Similarity NPC320847
0.8833 High Similarity NPC126759
0.8833 High Similarity NPC242580
0.8833 High Similarity NPC236070
0.8651 High Similarity NPC474237
0.8594 High Similarity NPC156298
0.8537 High Similarity NPC139047
0.8413 Intermediate Similarity NPC168707
0.8413 Intermediate Similarity NPC48623
0.8385 Intermediate Similarity NPC81261
0.8333 Intermediate Similarity NPC45663
0.8203 Intermediate Similarity NPC473464
0.8203 Intermediate Similarity NPC476332
0.8106 Intermediate Similarity NPC176590
0.8092 Intermediate Similarity NPC128321
0.8062 Intermediate Similarity NPC302211
0.8043 Intermediate Similarity NPC265335
0.803 Intermediate Similarity NPC95034
0.803 Intermediate Similarity NPC142087
0.8016 Intermediate Similarity NPC187993
0.8016 Intermediate Similarity NPC238176
0.7986 Intermediate Similarity NPC79372
0.7985 Intermediate Similarity NPC249425
0.7939 Intermediate Similarity NPC61685
0.7937 Intermediate Similarity NPC69539
0.7926 Intermediate Similarity NPC258073
0.7883 Intermediate Similarity NPC27394
0.7852 Intermediate Similarity NPC475880
0.7852 Intermediate Similarity NPC475102
0.7852 Intermediate Similarity NPC196621
0.7847 Intermediate Similarity NPC211565
0.7829 Intermediate Similarity NPC474131
0.7803 Intermediate Similarity NPC276962
0.7803 Intermediate Similarity NPC190086
0.7794 Intermediate Similarity NPC474143
0.7794 Intermediate Similarity NPC474246
0.7778 Intermediate Similarity NPC59654
0.777 Intermediate Similarity NPC115861
0.777 Intermediate Similarity NPC265515
0.7769 Intermediate Similarity NPC322569
0.7762 Intermediate Similarity NPC474599
0.776 Intermediate Similarity NPC280760
0.7752 Intermediate Similarity NPC51341
0.7752 Intermediate Similarity NPC32152
0.7744 Intermediate Similarity NPC170749
0.7737 Intermediate Similarity NPC329427
0.7737 Intermediate Similarity NPC317601
0.7727 Intermediate Similarity NPC248786
0.7724 Intermediate Similarity NPC169682
0.7724 Intermediate Similarity NPC60389
0.7698 Intermediate Similarity NPC291119
0.7698 Intermediate Similarity NPC281169
0.7692 Intermediate Similarity NPC232295
0.7669 Intermediate Similarity NPC147896
0.7669 Intermediate Similarity NPC248557
0.7652 Intermediate Similarity NPC204535
0.7652 Intermediate Similarity NPC46586
0.7647 Intermediate Similarity NPC271832
0.7647 Intermediate Similarity NPC206028
0.7643 Intermediate Similarity NPC474610
0.7643 Intermediate Similarity NPC194847
0.7643 Intermediate Similarity NPC21797
0.7634 Intermediate Similarity NPC212559
0.7615 Intermediate Similarity NPC98748
0.7615 Intermediate Similarity NPC471449
0.7594 Intermediate Similarity NPC474130
0.7589 Intermediate Similarity NPC471542
0.7584 Intermediate Similarity NPC477673
0.7584 Intermediate Similarity NPC477672
0.7578 Intermediate Similarity NPC473718
0.7576 Intermediate Similarity NPC475839
0.7574 Intermediate Similarity NPC47288
0.7571 Intermediate Similarity NPC475011
0.7571 Intermediate Similarity NPC161856
0.7571 Intermediate Similarity NPC51087
0.7569 Intermediate Similarity NPC329493
0.7557 Intermediate Similarity NPC14177
0.7534 Intermediate Similarity NPC471608
0.7519 Intermediate Similarity NPC188997
0.75 Intermediate Similarity NPC477210
0.75 Intermediate Similarity NPC129176
0.7483 Intermediate Similarity NPC477669
0.7483 Intermediate Similarity NPC476191
0.7483 Intermediate Similarity NPC76312
0.7482 Intermediate Similarity NPC118253
0.7482 Intermediate Similarity NPC251549
0.7482 Intermediate Similarity NPC27578
0.7482 Intermediate Similarity NPC289624
0.7465 Intermediate Similarity NPC98804
0.7465 Intermediate Similarity NPC476171
0.7464 Intermediate Similarity NPC474617
0.7464 Intermediate Similarity NPC11089
0.7464 Intermediate Similarity NPC470725
0.7463 Intermediate Similarity NPC261992
0.7442 Intermediate Similarity NPC283169
0.7434 Intermediate Similarity NPC477671
0.7434 Intermediate Similarity NPC477687
0.7429 Intermediate Similarity NPC211352
0.7426 Intermediate Similarity NPC329272
0.7417 Intermediate Similarity NPC477690
0.7413 Intermediate Similarity NPC475028
0.7413 Intermediate Similarity NPC476025
0.741 Intermediate Similarity NPC153019
0.7407 Intermediate Similarity NPC111088
0.7405 Intermediate Similarity NPC254233
0.7386 Intermediate Similarity NPC477674
0.7386 Intermediate Similarity NPC477675
0.7376 Intermediate Similarity NPC213122
0.7376 Intermediate Similarity NPC71372
0.7372 Intermediate Similarity NPC473993
0.7368 Intermediate Similarity NPC477691
0.7361 Intermediate Similarity NPC475012
0.7357 Intermediate Similarity NPC474635
0.7357 Intermediate Similarity NPC312560
0.7353 Intermediate Similarity NPC477213
0.7347 Intermediate Similarity NPC475813
0.7347 Intermediate Similarity NPC471600
0.7347 Intermediate Similarity NPC274085
0.7347 Intermediate Similarity NPC89664
0.7347 Intermediate Similarity NPC292256
0.7344 Intermediate Similarity NPC474920
0.7343 Intermediate Similarity NPC470722
0.7343 Intermediate Similarity NPC470721
0.7343 Intermediate Similarity NPC6100
0.7343 Intermediate Similarity NPC156888
0.7343 Intermediate Similarity NPC105493
0.7338 Intermediate Similarity NPC325003
0.7328 Intermediate Similarity NPC183154
0.7328 Intermediate Similarity NPC263754
0.7324 Intermediate Similarity NPC22222
0.7324 Intermediate Similarity NPC475029
0.7324 Intermediate Similarity NPC476018
0.7324 Intermediate Similarity NPC281513
0.7324 Intermediate Similarity NPC252095
0.7319 Intermediate Similarity NPC474636
0.7315 Intermediate Similarity NPC159697
0.7315 Intermediate Similarity NPC130959
0.7315 Intermediate Similarity NPC117788
0.7315 Intermediate Similarity NPC474940
0.7315 Intermediate Similarity NPC474795
0.7315 Intermediate Similarity NPC303013
0.7315 Intermediate Similarity NPC291326
0.7315 Intermediate Similarity NPC290902
0.7315 Intermediate Similarity NPC474856
0.7315 Intermediate Similarity NPC474834
0.731 Intermediate Similarity NPC475044
0.731 Intermediate Similarity NPC472523
0.731 Intermediate Similarity NPC475063
0.7305 Intermediate Similarity NPC83535
0.7297 Intermediate Similarity NPC475896
0.7293 Intermediate Similarity NPC328485
0.7293 Intermediate Similarity NPC31314
0.7293 Intermediate Similarity NPC478121
0.7292 Intermediate Similarity NPC470209
0.729 Intermediate Similarity NPC239118
0.7287 Intermediate Similarity NPC190212
0.7286 Intermediate Similarity NPC160623
0.7285 Intermediate Similarity NPC477676
0.7285 Intermediate Similarity NPC150928
0.728 Intermediate Similarity NPC30416
0.7279 Intermediate Similarity NPC89630
0.7279 Intermediate Similarity NPC78446
0.7279 Intermediate Similarity NPC36732
0.7279 Intermediate Similarity NPC316691
0.7273 Intermediate Similarity NPC283616
0.7267 Intermediate Similarity NPC475940
0.7267 Intermediate Similarity NPC474893
0.7267 Intermediate Similarity NPC220006
0.7267 Intermediate Similarity NPC471852
0.7267 Intermediate Similarity NPC181452
0.7266 Intermediate Similarity NPC16577
0.7266 Intermediate Similarity NPC470723
0.7266 Intermediate Similarity NPC469912
0.7259 Intermediate Similarity NPC49441
0.7255 Intermediate Similarity NPC472799
0.7252 Intermediate Similarity NPC33717
0.7252 Intermediate Similarity NPC163398
0.7246 Intermediate Similarity NPC477214
0.7246 Intermediate Similarity NPC477212
0.7246 Intermediate Similarity NPC477211
0.7246 Intermediate Similarity NPC319422
0.7241 Intermediate Similarity NPC473049
0.7241 Intermediate Similarity NPC472794
0.7239 Intermediate Similarity NPC100108
0.7239 Intermediate Similarity NPC277798
0.7237 Intermediate Similarity NPC476452
0.7231 Intermediate Similarity NPC114918
0.7231 Intermediate Similarity NPC87563
0.723 Intermediate Similarity NPC471305
0.7226 Intermediate Similarity NPC470726
0.7226 Intermediate Similarity NPC158542
0.7226 Intermediate Similarity NPC249836
0.7226 Intermediate Similarity NPC252962
0.7219 Intermediate Similarity NPC303989
0.7219 Intermediate Similarity NPC70764
0.7214 Intermediate Similarity NPC470727
0.7214 Intermediate Similarity NPC196193
0.7211 Intermediate Similarity NPC474154
0.7209 Intermediate Similarity NPC98372

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC279118 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.9435 High Similarity NPD7985 Registered
0.9237 High Similarity NPD7644 Approved
0.8833 High Similarity NPD7340 Approved
0.8583 High Similarity NPD1398 Phase 1
0.8258 Intermediate Similarity NPD1699 Clinical (unspecified phase)
0.8129 Intermediate Similarity NPD7982 Clinical (unspecified phase)
0.8125 Intermediate Similarity NPD1611 Approved
0.7803 Intermediate Similarity NPD6696 Suspended
0.7786 Intermediate Similarity NPD2346 Discontinued
0.7717 Intermediate Similarity NPD6671 Approved
0.7557 Intermediate Similarity NPD4626 Approved
0.75 Intermediate Similarity NPD6398 Clinical (unspecified phase)
0.7482 Intermediate Similarity NPD4060 Phase 1
0.7481 Intermediate Similarity NPD5691 Approved
0.741 Intermediate Similarity NPD8032 Phase 2
0.7407 Intermediate Similarity NPD1283 Approved
0.7372 Intermediate Similarity NPD2237 Approved
0.7368 Intermediate Similarity NPD3496 Discontinued
0.7333 Intermediate Similarity NPD3226 Approved
0.7324 Intermediate Similarity NPD7097 Phase 1
0.7293 Intermediate Similarity NPD1778 Approved
0.7292 Intermediate Similarity NPD5762 Approved
0.7292 Intermediate Similarity NPD5763 Approved
0.7266 Intermediate Similarity NPD4625 Phase 3
0.7266 Intermediate Similarity NPD7095 Approved
0.7234 Intermediate Similarity NPD2979 Phase 3
0.7234 Intermediate Similarity NPD4140 Approved
0.7226 Intermediate Similarity NPD2797 Approved
0.7222 Intermediate Similarity NPD6100 Approved
0.7222 Intermediate Similarity NPD6099 Approved
0.7209 Intermediate Similarity NPD7635 Approved
0.7206 Intermediate Similarity NPD4749 Approved
0.7192 Intermediate Similarity NPD6674 Discontinued
0.7185 Intermediate Similarity NPD1281 Approved
0.7153 Intermediate Similarity NPD2799 Discontinued
0.7133 Intermediate Similarity NPD2676 Approved
0.7133 Intermediate Similarity NPD2675 Approved
0.7132 Intermediate Similarity NPD1608 Approved
0.7123 Intermediate Similarity NPD7974 Phase 3
0.7105 Intermediate Similarity NPD5808 Clinical (unspecified phase)
0.7103 Intermediate Similarity NPD6032 Approved
0.7092 Intermediate Similarity NPD6410 Clinical (unspecified phase)
0.7092 Intermediate Similarity NPD3268 Approved
0.7092 Intermediate Similarity NPD2313 Discontinued
0.709 Intermediate Similarity NPD5585 Approved
0.7067 Intermediate Similarity NPD2532 Approved
0.7067 Intermediate Similarity NPD2533 Approved
0.7067 Intermediate Similarity NPD2534 Approved
0.7063 Intermediate Similarity NPD5124 Phase 1
0.7063 Intermediate Similarity NPD6355 Discontinued
0.7063 Intermediate Similarity NPD5123 Clinical (unspecified phase)
0.7055 Intermediate Similarity NPD2343 Clinical (unspecified phase)
0.7027 Intermediate Similarity NPD7976 Clinical (unspecified phase)
0.6986 Remote Similarity NPD4477 Approved
0.6986 Remote Similarity NPD2935 Discontinued
0.6986 Remote Similarity NPD4476 Approved
0.6963 Remote Similarity NPD1651 Approved
0.6957 Remote Similarity NPD3600 Clinical (unspecified phase)
0.6947 Remote Similarity NPD5535 Approved
0.6939 Remote Similarity NPD6004 Phase 3
0.6939 Remote Similarity NPD6002 Phase 3
0.6939 Remote Similarity NPD6003 Clinical (unspecified phase)
0.6939 Remote Similarity NPD6005 Phase 3
0.6939 Remote Similarity NPD6006 Clinical (unspecified phase)
0.6923 Remote Similarity NPD7819 Suspended
0.6918 Remote Similarity NPD4308 Phase 3
0.6912 Remote Similarity NPD17 Approved
0.6908 Remote Similarity NPD6090 Discontinued
0.6897 Remote Similarity NPD6653 Approved
0.6887 Remote Similarity NPD7837 Clinical (unspecified phase)
0.6879 Remote Similarity NPD2861 Phase 2
0.6871 Remote Similarity NPD2438 Suspended
0.6871 Remote Similarity NPD2862 Discontinued
0.6871 Remote Similarity NPD2531 Phase 2
0.6857 Remote Similarity NPD3267 Approved
0.6857 Remote Similarity NPD3266 Approved
0.6846 Remote Similarity NPD5698 Clinical (unspecified phase)
0.6842 Remote Similarity NPD7446 Clinical (unspecified phase)
0.6842 Remote Similarity NPD7004 Clinical (unspecified phase)
0.6835 Remote Similarity NPD4359 Approved
0.6831 Remote Similarity NPD2614 Approved
0.6829 Remote Similarity NPD5844 Phase 1
0.6818 Remote Similarity NPD2370 Clinical (unspecified phase)
0.6812 Remote Similarity NPD1535 Discovery
0.6809 Remote Similarity NPD6917 Clinical (unspecified phase)
0.68 Remote Similarity NPD7003 Approved
0.6797 Remote Similarity NPD6273 Approved
0.6779 Remote Similarity NPD2424 Discontinued
0.6763 Remote Similarity NPD1481 Phase 2
0.6759 Remote Similarity NPD4307 Phase 2
0.6738 Remote Similarity NPD6362 Approved
0.6736 Remote Similarity NPD411 Approved
0.6736 Remote Similarity NPD6798 Discontinued
0.6736 Remote Similarity NPD6859 Clinical (unspecified phase)
0.6728 Remote Similarity NPD7229 Phase 3
0.6714 Remote Similarity NPD5327 Phase 3
0.6712 Remote Similarity NPD4622 Approved
0.6712 Remote Similarity NPD447 Suspended
0.6712 Remote Similarity NPD4618 Approved
0.6711 Remote Similarity NPD6800 Clinical (unspecified phase)
0.6711 Remote Similarity NPD6666 Approved
0.6711 Remote Similarity NPD6667 Approved
0.6709 Remote Similarity NPD5929 Approved
0.669 Remote Similarity NPD6233 Phase 2
0.6689 Remote Similarity NPD4109 Clinical (unspecified phase)
0.6689 Remote Similarity NPD4110 Phase 3
0.6667 Remote Similarity NPD6387 Discontinued
0.6667 Remote Similarity NPD3225 Approved
0.6667 Remote Similarity NPD9697 Approved
0.6667 Remote Similarity NPD8127 Discontinued
0.6667 Remote Similarity NPD6353 Approved
0.6645 Remote Similarity NPD7427 Discontinued
0.6644 Remote Similarity NPD2203 Discontinued
0.6643 Remote Similarity NPD2232 Approved
0.6643 Remote Similarity NPD2233 Approved
0.6643 Remote Similarity NPD9717 Approved
0.6643 Remote Similarity NPD5736 Approved
0.6643 Remote Similarity NPD2230 Approved
0.6642 Remote Similarity NPD1894 Discontinued
0.6627 Remote Similarity NPD8313 Approved
0.6627 Remote Similarity NPD8312 Approved
0.6626 Remote Similarity NPD5710 Approved
0.6626 Remote Similarity NPD5711 Approved
0.6622 Remote Similarity NPD5688 Approved
0.6622 Remote Similarity NPD5689 Approved
0.6621 Remote Similarity NPD4907 Clinical (unspecified phase)
0.662 Remote Similarity NPD987 Approved
0.6619 Remote Similarity NPD3847 Discontinued
0.6606 Remote Similarity NPD7473 Discontinued
0.6599 Remote Similarity NPD5735 Approved
0.6597 Remote Similarity NPD6832 Phase 2
0.6582 Remote Similarity NPD7615 Clinical (unspecified phase)
0.6577 Remote Similarity NPD7033 Discontinued
0.6575 Remote Similarity NPD4870 Approved
0.6573 Remote Similarity NPD4624 Approved
0.6571 Remote Similarity NPD422 Phase 1
0.6567 Remote Similarity NPD1138 Approved
0.6567 Remote Similarity NPD7843 Approved
0.6556 Remote Similarity NPD970 Clinical (unspecified phase)
0.6554 Remote Similarity NPD4579 Clinical (unspecified phase)
0.6554 Remote Similarity NPD2157 Approved
0.6554 Remote Similarity NPD4097 Suspended
0.6552 Remote Similarity NPD7879 Clinical (unspecified phase)
0.6549 Remote Similarity NPD8651 Approved
0.6544 Remote Similarity NPD709 Approved
0.6544 Remote Similarity NPD7157 Approved
0.6541 Remote Similarity NPD37 Approved
0.6528 Remote Similarity NPD1712 Approved
0.6524 Remote Similarity NPD6232 Discontinued
0.6522 Remote Similarity NPD4967 Phase 2
0.6522 Remote Similarity NPD4965 Approved
0.6522 Remote Similarity NPD4966 Approved
0.6513 Remote Similarity NPD2800 Approved
0.6513 Remote Similarity NPD7421 Clinical (unspecified phase)
0.6503 Remote Similarity NPD1203 Approved
0.65 Remote Similarity NPD8455 Phase 2
0.6496 Remote Similarity NPD7325 Clinical (unspecified phase)
0.6493 Remote Similarity NPD1139 Approved
0.6493 Remote Similarity NPD1137 Approved
0.6489 Remote Similarity NPD968 Approved
0.6486 Remote Similarity NPD1899 Clinical (unspecified phase)
0.6483 Remote Similarity NPD4908 Phase 1
0.6481 Remote Similarity NPD3453 Discontinued
0.6471 Remote Similarity NPD497 Approved
0.6471 Remote Similarity NPD4628 Phase 3
0.6471 Remote Similarity NPD3750 Approved
0.6463 Remote Similarity NPD6663 Approved
0.6463 Remote Similarity NPD6959 Discontinued
0.6458 Remote Similarity NPD5647 Approved
0.6458 Remote Similarity NPD2798 Approved
0.6456 Remote Similarity NPD7458 Discontinued
0.6447 Remote Similarity NPD2897 Discontinued
0.6442 Remote Similarity NPD6234 Discontinued
0.6442 Remote Similarity NPD5709 Phase 3
0.6439 Remote Similarity NPD2342 Discontinued
0.6437 Remote Similarity NPD8397 Clinical (unspecified phase)
0.6433 Remote Similarity NPD8012 Clinical (unspecified phase)
0.641 Remote Similarity NPD1578 Phase 2
0.6402 Remote Similarity NPD4666 Phase 3
0.6398 Remote Similarity NPD1465 Phase 2
0.6397 Remote Similarity NPD498 Approved
0.6397 Remote Similarity NPD5283 Phase 1
0.6397 Remote Similarity NPD496 Approved
0.6397 Remote Similarity NPD495 Approved
0.6391 Remote Similarity NPD2684 Approved
0.6378 Remote Similarity NPD288 Approved
0.6369 Remote Similarity NPD3647 Clinical (unspecified phase)
0.6369 Remote Similarity NPD1940 Clinical (unspecified phase)
0.6369 Remote Similarity NPD6620 Discovery
0.6369 Remote Similarity NPD7228 Approved
0.6369 Remote Similarity NPD7177 Discontinued
0.6369 Remote Similarity NPD5049 Phase 3
0.6369 Remote Similarity NPD7314 Clinical (unspecified phase)
0.6364 Remote Similarity NPD7835 Discontinued
0.6364 Remote Similarity NPD3134 Approved
0.6364 Remote Similarity NPD8166 Discontinued
0.6358 Remote Similarity NPD3748 Approved
0.6358 Remote Similarity NPD4108 Discontinued
0.6357 Remote Similarity NPD3444 Approved
0.6357 Remote Similarity NPD289 Clinical (unspecified phase)

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data