Structure

Physi-Chem Properties

Molecular Weight:  560.27
Volume:  570.405
LogP:  2.46
LogD:  2.318
LogS:  -3.223
# Rotatable Bonds:  5
TPSA:  169.8
# H-Bond Aceptor:  11
# H-Bond Donor:  6
# Rings:  2
# Heavy Atoms:  11

MedChem Properties

QED Drug-Likeness Score:  0.207
Synthetic Accessibility Score:  6.154
Fsp3:  0.448
Lipinski Rule-of-5:  Rejected
Pfizer Rule:  Accepted
GSK Rule:  Rejected
BMS Rule:  0
Golden Triangle Rule:  Rejected
Chelating Alert:  1
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -4.842
MDCK Permeability:  9.825072993407957e-06
Pgp-inhibitor:  0.92
Pgp-substrate:  0.999
Human Intestinal Absorption (HIA):  0.932
20% Bioavailability (F20%):  0.05
30% Bioavailability (F30%):  0.988

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.025
Plasma Protein Binding (PPB):  97.7652816772461%
Volume Distribution (VD):  0.574
Pgp-substrate:  3.082486152648926%

ADMET: Metabolism

CYP1A2-inhibitor:  0.035
CYP1A2-substrate:  0.115
CYP2C19-inhibitor:  0.019
CYP2C19-substrate:  0.388
CYP2C9-inhibitor:  0.015
CYP2C9-substrate:  0.095
CYP2D6-inhibitor:  0.01
CYP2D6-substrate:  0.228
CYP3A4-inhibitor:  0.082
CYP3A4-substrate:  0.534

ADMET: Excretion

Clearance (CL):  8.783
Half-life (T1/2):  0.133

ADMET: Toxicity

hERG Blockers:  0.225
Human Hepatotoxicity (H-HT):  0.973
Drug-inuced Liver Injury (DILI):  0.928
AMES Toxicity:  0.169
Rat Oral Acute Toxicity:  0.978
Maximum Recommended Daily Dose:  0.95
Skin Sensitization:  0.862
Carcinogencity:  0.244
Eye Corrosion:  0.003
Eye Irritation:  0.007
Respiratory Toxicity:  0.962

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General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs  

  Natural Product: NPC271621

Natural Product ID:  NPC271621
Common Name*:   Geldanamycin
IUPAC Name:   [(3R,5S,6R,7S,8E,10S,11S,12Z,14E)-6-hydroxy-5,11,21-trimethoxy-3,7,9,15-tetramethyl-16,20,22-trioxo-17-azabicyclo[16.3.1]docosa-1(21),8,12,14,18-pentaen-10-yl] carbamate
Synonyms:   Geldanamycin
Standard InCHIKey:  QTQAWLPCGQOSGP-KSRBKZBZSA-N
Standard InCHI:  InChI=1S/C29H40N2O9/c1-15-11-19-25(34)20(14-21(32)27(19)39-7)31-28(35)16(2)9-8-10-22(37-5)26(40-29(30)36)18(4)13-17(3)24(33)23(12-15)38-6/h8-10,13-15,17,22-24,26,33H,11-12H2,1-7H3,(H2,30,36)(H,31,35)/b10-8-,16-9+,18-13+/t15-,17+,22+,23+,24-,26+/m1/s1
SMILES:  CO[C@H]1C[C@H](C)CC2=C(OC)C(=O)C=C(C2=O)N=C(O)/C(=C/C=C[C@@H]([C@H](/C(=C/[C@@H]([C@H]1O)C)/C)OC(=N)O)OC)/C
Synthetic Gene Cluster:   BGC0000066;BGC0000067;BGC0000068;
ChEMBL Identifier:   CHEMBL278315
PubChem CID:   5288382
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000261] Phenylpropanoids and polyketides
      • [CHEMONTID:0000064] Macrolactams

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO12185 Humicola fuscoatra Species Chaetomiaceae Eukaryota n.a. n.a. n.a. PMID[12444718]
NPO13391 Streptomyces hygroscopicus Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[14563159]
NPO13391 Streptomyces hygroscopicus Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[15844961]
NPO13391 Streptomyces hygroscopicus Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[16378365]
NPO13391 Streptomyces hygroscopicus Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[16453790]
NPO13391 Streptomyces hygroscopicus Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[16724461]
NPO13391 Streptomyces hygroscopicus Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[17632514]
NPO13391 Streptomyces hygroscopicus Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[19231864]
NPO13391 Streptomyces hygroscopicus Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[21486005]
NPO13391 Streptomyces hygroscopicus Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[21504214]
NPO13391.6 Streptomyces hygroscopicus 17997 Strain Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[23656556]
NPO13391 Streptomyces hygroscopicus Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[24224794]
NPO12185 Humicola fuscoatra Species Chaetomiaceae Eukaryota n.a. n.a. n.a. PMID[24495105]
NPO13391 Streptomyces hygroscopicus Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[3170341]
NPO13391 Streptomyces hygroscopicus Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[3819734]
NPO13391 Streptomyces hygroscopicus Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[5549382]
NPO13391 Streptomyces hygroscopicus Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[TCMID]
NPO13391 Streptomyces hygroscopicus Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO12185 Humicola fuscoatra Species Chaetomiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT134 Cell Line SK-BR-3 Homo sapiens IC50 = 70.0 nM PMID[454864]
NPT134 Cell Line SK-BR-3 Homo sapiens IC50 = 70.0 nM PMID[454865]
NPT179 Cell Line A2780 Homo sapiens IC50 = 3.4 nM PMID[454867]
NPT3118 Cell Line Cell line Homo sapiens GI50 = 327.0 nM PMID[454868]
NPT4501 Individual Protein Heat shock protein HSP 90 (HSP82) Saccharomyces cerevisiae S288c Inhibition = 90.0 % PMID[454871]
NPT4501 Individual Protein Heat shock protein HSP 90 (HSP82) Saccharomyces cerevisiae S288c IC50 = 4800.0 nM PMID[454871]
NPT393 Cell Line HCT-116 Homo sapiens GI50 = 67.0 nM PMID[454871]
NPT323 Cell Line SW-620 Homo sapiens IC50 = 6.2 nM PMID[454872]
NPT139 Cell Line HT-29 Homo sapiens IC50 = 24.5 nM PMID[454872]
NPT83 Cell Line MCF7 Homo sapiens IC50 = 6.5 nM PMID[454872]
NPT111 Cell Line K562 Homo sapiens IC50 = 22.1 nM PMID[454872]
NPT4246 Cell Line LS174T Homo sapiens IC50 = 450.0 nM PMID[454874]
NPT2218 Cell Line P19 Mus musculus IC50 = 100.0 nM PMID[454876]
NPT83 Cell Line MCF7 Homo sapiens GI50 = 35600.0 nM PMID[454877]
NPT393 Cell Line HCT-116 Homo sapiens GI50 = 21.0 nM PMID[454880]
NPT579 Cell Line DLD-1 Homo sapiens GI50 = 37.0 nM PMID[454880]
NPT81 Cell Line A549 Homo sapiens GI50 = 64.0 nM PMID[454880]
NPT2891 Cell Line H4 Homo sapiens Activity = 81.41 % PMID[454881]
NPT2891 Cell Line H4 Homo sapiens Activity = 313.52 % PMID[454881]
NPT2891 Cell Line H4 Homo sapiens Activity = 546.8 % PMID[454881]
NPT2891 Cell Line H4 Homo sapiens Activity = 35.18 % PMID[454881]
NPT2891 Cell Line H4 Homo sapiens Activity = 41.33 % PMID[454881]
NPT2891 Cell Line H4 Homo sapiens Activity = 39.26 % PMID[454881]
NPT2891 Cell Line H4 Homo sapiens Activity = 87.25 % PMID[454881]
NPT2891 Cell Line H4 Homo sapiens Activity = 74.67 % PMID[454881]
NPT2891 Cell Line H4 Homo sapiens Activity = 87.8 % PMID[454881]
NPT2891 Cell Line H4 Homo sapiens Activity = 72.93 % PMID[454881]
NPT2891 Cell Line H4 Homo sapiens Activity = 398.91 % PMID[454881]
NPT1265 Individual Protein Serine/threonine-protein kinase PIM1 Homo sapiens Tm < 2.0 degrees C PMID[454884]
NPT1700 Individual Protein Serine/threonine-protein kinase PIM2 Homo sapiens Tm < 2.0 degrees C PMID[454884]
NPT1701 Individual Protein Serine/threonine-protein kinase PIM3 Homo sapiens Tm < 2.0 degrees C PMID[454884]
NPT3221 Individual Protein Serine/threonine-protein kinase GAK Homo sapiens Tm < 2.0 degrees C PMID[454884]
NPT1692 Individual Protein Mitogen-activated protein kinase 6 Homo sapiens Tm < 2.0 degrees C PMID[454884]
NPT1616 Individual Protein MAP kinase p38 beta Homo sapiens Tm < 2.0 degrees C PMID[454884]
NPT1437 Individual Protein Tyrosine-protein kinase FES Homo sapiens Tm < 2.0 degrees C PMID[454884]
NPT1431 Individual Protein Mitogen-activated protein kinase kinase kinase 5 Homo sapiens Tm < 2.0 degrees C PMID[454884]
NPT3331 Individual Protein Serine/threonine-protein kinase MST2 Homo sapiens Tm < 2.0 degrees C PMID[454884]
NPT1706 Individual Protein Serine/threonine-protein kinase 2 Homo sapiens Tm < 2.0 degrees C PMID[454884]
NPT1707 Individual Protein Serine/threonine-protein kinase 10 Homo sapiens Tm < 2.0 degrees C PMID[454884]
NPT1691 Individual Protein Dual specificity mitogen-activated protein kinase kinase 6 Homo sapiens Tm < 2.0 degrees C PMID[454884]
NPT1684 Individual Protein Casein kinase I gamma 1 Homo sapiens Tm < 2.0 degrees C PMID[454884]
NPT1702 Individual Protein Serine/threonine-protein kinase PLK4 Homo sapiens Tm < 2.0 degrees C PMID[454884]
NPT1697 Individual Protein Serine/threonine-protein kinase PAK6 Homo sapiens Tm < 2.0 degrees C PMID[454884]
NPT1581 Individual Protein Carbonyl reductase [NADPH] 1 Homo sapiens Tm < 2.0 degrees C PMID[454884]
NPT134 Cell Line SK-BR-3 Homo sapiens IC50 = 41.0 nM PMID[454886]
NPT1429 Individual Protein Heat shock protein HSP 90-beta Homo sapiens Kd = 670.0 nM PMID[454886]
NPT519 Cell Line SH-SY5Y Homo sapiens EC50 = 42.69 nM PMID[454887]
NPT4501 Individual Protein Heat shock protein HSP 90 (HSP82) Saccharomyces cerevisiae S288c Kd = 1200.0 nM PMID[454888]
NPT1429 Individual Protein Heat shock protein HSP 90-beta Homo sapiens IC50 = 20.0 nM PMID[454888]
NPT4501 Individual Protein Heat shock protein HSP 90 (HSP82) Saccharomyces cerevisiae S288c IC50 = 2300.0 nM PMID[454889]
NPT83 Cell Line MCF7 Homo sapiens IC50 = 9600.0 nM PMID[454889]
NPT83 Cell Line MCF7 Homo sapiens IC50 = 16.1 nM PMID[454890]
NPT134 Cell Line SK-BR-3 Homo sapiens IC50 = 15.8 nM PMID[454890]
NPT1429 Individual Protein Heat shock protein HSP 90-beta Homo sapiens Activity = 0.05 uM PMID[454891]
NPT1429 Individual Protein Heat shock protein HSP 90-beta Homo sapiens Activity = 281.0 nM PMID[454891]
NPT762 Cell Line A-431 Homo sapiens IC50 = 200.0 nM PMID[454893]
NPT306 Cell Line PC-3 Homo sapiens FC = 0.261 n.a. PMID[454894]
NPT55 Individual Protein Putative fructose-1,6-bisphosphate aldolase Giardia intestinalis Potency = 3539.7 nM PMID[454895]
NPT531 Individual Protein Nuclear receptor ROR-gamma Mus musculus Potency = 4466.8 nM PMID[454895]
NPT393 Cell Line HCT-116 Homo sapiens EC50 = 30.0 nM PMID[454899]
NPT4310 Individual Protein Heat shock protein HSP 90 Oryctolagus cuniculus IC50 = 2000.0 nM PMID[454900]
NPT393 Cell Line HCT-116 Homo sapiens EC50 = 30.0 nM PMID[454901]
NPT393 Cell Line HCT-116 Homo sapiens IC50 = 30.0 nM PMID[454903]
NPT2341 Cell Line NCI-H1975 Homo sapiens IC50 = 36.0 nM PMID[454903]
NPT198 Individual Protein Vitamin D receptor Homo sapiens Potency n.a. 79432.8 nM PMID[454895]
NPT1429 Individual Protein Heat shock protein HSP 90-beta Homo sapiens Kd = 1000.0 nM PMID[454905]
NPT165 Cell Line HeLa Homo sapiens IC50 > 5000.0 nM PMID[454906]
NPT83 Cell Line MCF7 Homo sapiens IC50 = 53.0 nM PMID[454906]
NPT65 Cell Line HepG2 Homo sapiens IC50 = 370.0 nM PMID[454907]
NPT64 Individual Protein ATPase family AAA domain-containing protein 5 Homo sapiens Potency n.a. 1987.2 nM PMID[454908]
NPT64 Individual Protein ATPase family AAA domain-containing protein 5 Homo sapiens Potency n.a. 14068.4 nM PMID[454908]
NPT64 Individual Protein ATPase family AAA domain-containing protein 5 Homo sapiens Potency n.a. 17711.1 nM PMID[454908]
NPT64 Individual Protein ATPase family AAA domain-containing protein 5 Homo sapiens Potency n.a. 1406.8 nM PMID[454908]
NPT64 Individual Protein ATPase family AAA domain-containing protein 5 Homo sapiens Potency n.a. 4991.7 nM PMID[454908]
NPT1429 Individual Protein Heat shock protein HSP 90-beta Homo sapiens IC50 = 348.0 nM PMID[454909]
NPT65 Cell Line HepG2 Homo sapiens IC50 = 300.0 nM PMID[454911]
NPT134 Cell Line SK-BR-3 Homo sapiens IC50 = 8.5 nM PMID[454912]
NPT83 Cell Line MCF7 Homo sapiens IC50 = 9.8 nM PMID[454912]
NPT81 Cell Line A549 Homo sapiens IC50 = 150.0 nM PMID[454913]
NPT4505 Individual Protein Heat shock protein 75 kDa, mitochondrial Homo sapiens IC50 = 661.0 nM PMID[454914]
NPT4500 Individual Protein Heat shock protein 90 beta Canis lupus familiaris IC50 = 10.0 nM PMID[454914]
NPT1429 Individual Protein Heat shock protein HSP 90-beta Homo sapiens IC50 = 22.0 nM PMID[454914]
NPT134 Cell Line SK-BR-3 Homo sapiens Activity = 65.0 % PMID[454915]
NPT134 Cell Line SK-BR-3 Homo sapiens Activity = 18.0 % PMID[454915]
NPT134 Cell Line SK-BR-3 Homo sapiens Activity = 16.0 % PMID[454915]
NPT134 Cell Line SK-BR-3 Homo sapiens Activity = 10.0 % PMID[454915]
NPT1429 Individual Protein Heat shock protein HSP 90-beta Homo sapiens Kd = 152.0 nM PMID[454919]
NPT839 Cell Line L6 Rattus norvegicus IC50 = 6000.0 nM PMID[454919]
NPT858 Cell Line LNCaP Homo sapiens IC50 = 430.0 nM PMID[454922]
NPT82 Cell Line MDA-MB-231 Homo sapiens IC50 = 50.0 nM PMID[454922]
NPT83 Cell Line MCF7 Homo sapiens IC50 = 40.0 nM PMID[454923]
NPT83 Cell Line MCF7 Homo sapiens Inhibition = 81.0 % PMID[454923]
NPT4310 Individual Protein Heat shock protein HSP 90 Oryctolagus cuniculus IC50 = 282.0 nM PMID[454924]
NPT1429 Individual Protein Heat shock protein HSP 90-beta Homo sapiens IC50 < 10.0 nM PMID[454924]
NPT1429 Individual Protein Heat shock protein HSP 90-beta Homo sapiens Inhibition = 100.0 % PMID[454924]
NPT82 Cell Line MDA-MB-231 Homo sapiens IC50 = 50.0 nM PMID[454925]
NPT737 Cell Line HUVEC Homo sapiens IC50 = 19.0 nM PMID[454925]
NPT81 Cell Line A549 Homo sapiens IC50 = 97.0 nM PMID[454925]
NPT165 Cell Line HeLa Homo sapiens IC50 = 798.0 nM PMID[454925]
NPT762 Cell Line A-431 Homo sapiens IC50 = 40.0 nM PMID[454925]
NPT660 Cell Line SW480 Homo sapiens IC50 = 310.0 nM PMID[454925]
NPT65 Cell Line HepG2 Homo sapiens IC50 = 40.0 nM PMID[454925]
NPT1671 Individual Protein AMP-activated protein kinase, alpha-2 subunit Homo sapiens Thermal melting change = 0.4 degrees C PMID[454926]
NPT1672 Individual Protein CaM kinase I delta Homo sapiens Thermal melting change = 0.1 degrees C PMID[454926]
NPT1673 Individual Protein CaM kinase I gamma Homo sapiens Thermal melting change = 0.2 degrees C PMID[454926]
NPT1674 Individual Protein CaM kinase II alpha Homo sapiens Thermal melting change = -0.1 degrees C PMID[454926]
NPT1630 Individual Protein CaM kinase II beta Homo sapiens Thermal melting change = -0.1 degrees C PMID[454926]
NPT1675 Individual Protein CaM kinase II delta Homo sapiens Thermal melting change = -0.5 degrees C PMID[454926]
NPT1676 Individual Protein CaM kinase II gamma Homo sapiens Thermal melting change = 0.1 degrees C PMID[454926]
NPT1677 Individual Protein CaM kinase IV Homo sapiens Thermal melting change = 0.0 degrees C PMID[454926]
NPT1678 Individual Protein CaM-kinase kinase beta Homo sapiens Thermal melting change = -0.6 degrees C PMID[454926]
NPT1371 Individual Protein Cyclin-dependent kinase 2 Homo sapiens Thermal melting change = 0.5 degrees C PMID[454926]
NPT1571 Individual Protein Cyclin-dependent kinase 6 Homo sapiens Thermal melting change = 0.1 degrees C PMID[454926]
NPT1679 Individual Protein Cyclin-dependent kinase-like 1 Homo sapiens Thermal melting change = -0.5 degrees C PMID[454926]
NPT1680 Individual Protein Serine/threonine-protein kinase Chk2 Homo sapiens Thermal melting change = 0.2 degrees C PMID[454926]
NPT1681 Individual Protein Dual specificty protein kinase CLK1 Homo sapiens Thermal melting change = 0.6 degrees C PMID[454926]
NPT1682 Individual Protein Dual specificity protein kinase CLK2 Homo sapiens Thermal melting change = -0.1 degrees C PMID[454926]
NPT1683 Individual Protein Dual specificity protein kinase CLK3 Homo sapiens Thermal melting change = -0.1 degrees C PMID[454926]
NPT1684 Individual Protein Casein kinase I gamma 1 Homo sapiens Thermal melting change = 0.5 degrees C PMID[454926]
NPT1685 Individual Protein Casein kinase I gamma 2 Homo sapiens Thermal melting change = 0.4 degrees C PMID[454926]
NPT1686 Individual Protein Casein kinase I isoform gamma-3 Homo sapiens Thermal melting change = 0.4 degrees C PMID[454926]
NPT1687 Individual Protein Death-associated protein kinase 3 Homo sapiens Thermal melting change = -0.6 degrees C PMID[454926]
NPT1688 Individual Protein Myotonin-protein kinase Homo sapiens Thermal melting change = -0.3 degrees C PMID[454926]
NPT591 Individual Protein Glycogen synthase kinase-3 beta Homo sapiens Thermal melting change = 0.5 degrees C PMID[454926]
NPT1689 Individual Protein Tyrosine-protein kinase JAK1 Homo sapiens Thermal melting change = -0.5 degrees C PMID[454926]
NPT1690 Individual Protein Dual specificity mitogen-activated protein kinase kinase 2 Homo sapiens Thermal melting change = -0.5 degrees C PMID[454926]
NPT1691 Individual Protein Dual specificity mitogen-activated protein kinase kinase 6 Homo sapiens Thermal melting change = 0.0 degrees C PMID[454926]
NPT1431 Individual Protein Mitogen-activated protein kinase kinase kinase 5 Homo sapiens Thermal melting change = -0.5 degrees C PMID[454926]
NPT1616 Individual Protein MAP kinase p38 beta Homo sapiens Thermal melting change = -0.2 degrees C PMID[454926]
NPT281 Individual Protein MAP kinase ERK1 Homo sapiens Thermal melting change = 0.1 degrees C PMID[454926]
NPT1692 Individual Protein Mitogen-activated protein kinase 6 Homo sapiens Thermal melting change = 0.1 degrees C PMID[454926]
NPT1693 Individual Protein Serine/threonine-protein kinase MST4 Homo sapiens Thermal melting change = -0.4 degrees C PMID[454926]
NPT1658 Individual Protein Serine/threonine-protein kinase NEK2 Homo sapiens Thermal melting change = 0.5 degrees C PMID[454926]
NPT1657 Individual Protein Serine/threonine-protein kinase NEK6 Homo sapiens Thermal melting change = -0.2 degrees C PMID[454926]
NPT1694 Individual Protein Serine/threonine-protein kinase OSR1 Homo sapiens Thermal melting change = 0.8 degrees C PMID[454926]
NPT1695 Individual Protein Serine/threonine-protein kinase PAK 4 Homo sapiens Thermal melting change = -0.2 degrees C PMID[454926]
NPT1696 Individual Protein Serine/threonine-protein kinase PAK7 Homo sapiens Thermal melting change = 0.0 degrees C PMID[454926]
NPT1697 Individual Protein Serine/threonine-protein kinase PAK6 Homo sapiens Thermal melting change = 0.3 degrees C PMID[454926]
NPT1698 Individual Protein Serine/threonine-protein kinase PCTAIRE-1 Homo sapiens Thermal melting change = -0.4 degrees C PMID[454926]
NPT1699 Individual Protein 3-phosphoinositide dependent protein kinase-1 Homo sapiens Thermal melting change = 0.0 degrees C PMID[454926]
NPT1265 Individual Protein Serine/threonine-protein kinase PIM1 Homo sapiens Thermal melting change = -0.2 degrees C PMID[454926]
NPT1700 Individual Protein Serine/threonine-protein kinase PIM2 Homo sapiens Thermal melting change = -0.1 degrees C PMID[454926]
NPT1701 Individual Protein Serine/threonine-protein kinase PIM3 Homo sapiens Thermal melting change = 0.5 degrees C PMID[454926]
NPT1702 Individual Protein Serine/threonine-protein kinase PLK4 Homo sapiens Thermal melting change = 0.2 degrees C PMID[454926]
NPT1703 Individual Protein cAMP-dependent protein kinase alpha-catalytic subunit Homo sapiens Thermal melting change = 1.1 degrees C PMID[454926]
NPT1704 Individual Protein Serine/threonine-protein kinase RIO2 Homo sapiens Thermal melting change = -0.6 degrees C PMID[454926]
NPT1705 Individual Protein Ribosomal protein S6 kinase alpha 3 Homo sapiens Thermal melting change = 0.2 degrees C PMID[454926]
NPT1705 Individual Protein Ribosomal protein S6 kinase alpha 3 Homo sapiens Thermal melting change = -0.3 degrees C PMID[454926]
NPT1706 Individual Protein Serine/threonine-protein kinase 2 Homo sapiens Thermal melting change = 1.7 degrees C PMID[454926]
NPT1707 Individual Protein Serine/threonine-protein kinase 10 Homo sapiens Thermal melting change = 0.5 degrees C PMID[454926]
NPT1708 Individual Protein Serine/threonine-protein kinase 16 Homo sapiens Thermal melting change = 0.4 degrees C PMID[454926]
NPT1709 Individual Protein Serine/threonine-protein kinase 17A Homo sapiens Thermal melting change = 0.3 degrees C PMID[454926]
NPT1710 Individual Protein Serine/threonine-protein kinase 38 Homo sapiens Thermal melting change = 0.2 degrees C PMID[454926]
NPT1693 Individual Protein Serine/threonine-protein kinase MST4 Homo sapiens Thermal melting change = -0.3 degrees C PMID[454926]
NPT1711 Individual Protein Serine/threonine-protein kinase MST1 Homo sapiens Thermal melting change = 0.1 degrees C PMID[454926]
NPT1712 Individual Protein TRAF2- and NCK-interacting kinase Homo sapiens Thermal melting change = -0.4 degrees C PMID[454926]
NPT1713 Individual Protein PDZ-binding kinase Homo sapiens Thermal melting change = 0.6 degrees C PMID[454926]
NPT1715 Individual Protein Serine/threonine-protein kinase VRK2 Homo sapiens Thermal melting change = 0.2 degrees C PMID[454926]
NPT1717 Individual Protein Serine/threonine-protein kinase 25 Homo sapiens Thermal melting change = -0.6 degrees C PMID[454926]
NPT83 Cell Line MCF7 Homo sapiens IC50 = 42.7 nM PMID[454928]
NPT71 Cell Line HEK293 Homo sapiens Activity = 15.8 % PMID[454929]
NPT82 Cell Line MDA-MB-231 Homo sapiens Activity = 0.06 uM PMID[454931]
NPT82 Cell Line MDA-MB-231 Homo sapiens IC50 = 110.0 nM PMID[454932]
NPT81 Cell Line A549 Homo sapiens IC50 = 109.0 nM PMID[454932]
NPT2218 Cell Line P19 Mus musculus Activity = 59.14 % PMID[454934]
NPT2218 Cell Line P19 Mus musculus Activity = 55.22 % PMID[454934]
NPT2341 Cell Line NCI-H1975 Homo sapiens Activity = 9.89 % PMID[454935]
NPT2341 Cell Line NCI-H1975 Homo sapiens Activity = 13.18 % PMID[454935]
NPT2341 Cell Line NCI-H1975 Homo sapiens Activity = 11.22 % PMID[454935]
NPT2341 Cell Line NCI-H1975 Homo sapiens Activity = 65.71 % PMID[454935]
NPT389 Cell Line RPMI-8226 Homo sapiens GI50 = 3.0 nM PMID[454936]
NPT82 Cell Line MDA-MB-231 Homo sapiens IC50 = 60.0 nM PMID[454937]
NPT81 Cell Line A549 Homo sapiens IC50 = 100.0 nM PMID[454937]
NPT2341 Cell Line NCI-H1975 Homo sapiens GI50 = 560.0 nM PMID[454941]
NPT3960 Individual Protein Bcr/Abl fusion protein Homo sapiens IC50 = 1000.0 nM PMID[454944]
NPT3960 Individual Protein Bcr/Abl fusion protein Homo sapiens IC50 = 5000.0 nM PMID[454944]
NPT179 Cell Line A2780 Homo sapiens IC50 = 70.0 nM PMID[454945]
NPT547 Cell Line BGC-823 Homo sapiens IC50 = 110.0 nM PMID[454945]
NPT1083 Cell Line A-375 Homo sapiens IC50 = 60.0 nM PMID[454945]
NPT393 Cell Line HCT-116 Homo sapiens IC50 = 100.0 nM PMID[454945]
NPT83 Cell Line MCF7 Homo sapiens IC50 = 110.0 nM PMID[454945]
NPT1312 Cell Line SW1990 Homo sapiens IC50 = 290.0 nM PMID[454945]
NPT1429 Individual Protein Heat shock protein HSP 90-beta Homo sapiens Kd = 158.0 nM PMID[454946]
NPT83 Cell Line MCF7 Homo sapiens FC = 1.01 n.a. PMID[454949]
NPT111 Cell Line K562 Homo sapiens IC50 = 3.5 nM PMID[454950]
NPT116 Cell Line HL-60 Homo sapiens IC50 = 6.1 nM PMID[454950]
NPT81 Cell Line A549 Homo sapiens IC50 = 4.4 nM PMID[454950]
NPT83 Cell Line MCF7 Homo sapiens IC50 = 7.7 nM PMID[454950]
NPT659 Cell Line SMMC-7721 Homo sapiens IC50 = 110.0 nM PMID[454951]
NPT65 Cell Line HepG2 Homo sapiens IC50 = 1740.0 nM PMID[454951]
NPT82 Cell Line MDA-MB-231 Homo sapiens IC50 = 620.0 nM PMID[454951]
NPT660 Cell Line SW480 Homo sapiens IC50 = 510.0 nM PMID[454951]
NPT134 Cell Line SK-BR-3 Homo sapiens IC50 = 870.0 nM PMID[454954]
NPT146 Cell Line SK-OV-3 Homo sapiens IC50 = 940.0 nM PMID[454954]
NPT306 Cell Line PC-3 Homo sapiens IC50 = 730.0 nM PMID[454954]
NPT1535 Cell Line U-87 MG Homo sapiens IC50 = 810.0 nM PMID[454954]
NPT81 Cell Line A549 Homo sapiens IC50 = 990.0 nM PMID[454954]
NPT918 Individual Protein Heat shock protein HSP 90-alpha Homo sapiens Kd = 1215.0 nM PMID[454863]
NPT918 Individual Protein Heat shock protein HSP 90-alpha Homo sapiens Kd = 775.0 nM PMID[454863]
NPT32 Organism Mus musculus Mus musculus Inhibition = 30.0 % PMID[454864]
NPT32 Organism Mus musculus Mus musculus Inhibition = 6.0 % PMID[454864]
NPT32 Organism Mus musculus Mus musculus Inhibition = 25.0 % PMID[454864]
NPT2 Others Unspecified IC50 = 50.0 nM PMID[454866]
NPT2 Others Unspecified IC50 = 60.0 nM PMID[454866]
NPT2264 Protein Family Heat shock protein HSP90 Homo sapiens IC50 = 200.0 nM PMID[454866]
NPT2264 Protein Family Heat shock protein HSP90 Homo sapiens Kd = 1200.0 nM PMID[454869]
NPT918 Individual Protein Heat shock protein HSP 90-alpha Homo sapiens Concentration = 5.0 uM PMID[454870]
NPT2264 Protein Family Heat shock protein HSP90 Homo sapiens EC50 = 35.0 nM PMID[454873]
NPT610 Others Molecular identity unknown Activity = 121.0 % PMID[454876]
NPT27 Others Unspecified IC50 = 1800.0 nM PMID[454876]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. Activity = 100.0 % PMID[454876]
NPT27 Others Unspecified Ratio > 1800.0 n.a. PMID[454876]
NPT2 Others Unspecified IC50 = 22000.0 nM PMID[454877]
NPT2 Others Unspecified IC50 < 100.0 nM PMID[454878]
NPT2 Others Unspecified Activity = 80.0 % PMID[454878]
NPT918 Individual Protein Heat shock protein HSP 90-alpha Homo sapiens IC50 = 20.0 nM PMID[454879]
NPT2 Others Unspecified EC50 = 57.0 nM PMID[454880]
NPT2 Others Unspecified MEC = 0.11 uM PMID[454880]
NPT2 Others Unspecified MEC = 0.33 uM PMID[454880]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. GI50 = 59.0 nM PMID[454880]
NPT2 Others Unspecified Kd = 1200.0 nM PMID[454882]
NPT2 Others Unspecified IC50 = 7000.0 nM PMID[454882]
NPT2 Others Unspecified Tm < 2.0 degrees C PMID[454884]
NPT2264 Protein Family Heat shock protein HSP90 Homo sapiens Tm = 3.2 degrees C PMID[454884]
NPT22938 SINGLE PROTEIN Carbonyl reductase [NADPH] 3 Homo sapiens Tm < 2.0 degrees C PMID[454884]
NPT32 Organism Mus musculus Mus musculus LD50 = 1.0 mg.kg-1 PMID[454885]
NPT3130 Organism Lepidium sativum Lepidium sativum Activity = 50.0 % PMID[454885]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. GI = 50.0 % PMID[454888]
NPT191 Organism Hepatitis C virus Hepatitis C virus EC50 = 0.25 nM PMID[454897]
NPT191 Organism Hepatitis C virus Hepatitis C virus EC50 = 1.2 nM PMID[454897]
NPT191 Organism Hepatitis C virus Hepatitis C virus Ratio IC50 = 5.0 n.a. PMID[454897]
NPT918 Individual Protein Heat shock protein HSP 90-alpha Homo sapiens IC50 = 40.0 nM PMID[454899]
NPT918 Individual Protein Heat shock protein HSP 90-alpha Homo sapiens IC50 = 40.0 nM PMID[454901]
NPT2 Others Unspecified IC50 = 50.0 nM PMID[454901]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. EC50 = 89.0 nM PMID[454901]
NPT2 Others Unspecified Activity = 0.0 % PMID[454902]
NPT918 Individual Protein Heat shock protein HSP 90-alpha Homo sapiens IC50 = 40.0 nM PMID[454903]
NPT2 Others Unspecified IC50 = 50.0 nM PMID[454903]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. IC50 = 89.0 nM PMID[454903]
NPT888 Individual Protein 78 kDa glucose-regulated protein Homo sapiens Potency n.a. 35481.3 nM PMID[454895]
NPT918 Individual Protein Heat shock protein HSP 90-alpha Homo sapiens IC50 = 272.0 nM PMID[454910]
NPT35 Others n.a. Solubility = 2.0 ug.mL-1 PMID[454911]
NPT918 Individual Protein Heat shock protein HSP 90-alpha Homo sapiens IC50 = 28.0 nM PMID[454914]
NPT2 Others Unspecified FC = 3.0 n.a. PMID[454915]
NPT2 Others Unspecified Potency n.a. 17782.8 nM PMID[454895]
NPT2 Others Unspecified Potency n.a. 15848.9 nM PMID[454895]
NPT919 Individual Protein HSP90 Plasmodium falciparum 3D7 Kd = 318.0 nM PMID[454919]
NPT918 Individual Protein Heat shock protein HSP 90-alpha Homo sapiens Kd = 714.0 nM PMID[454919]
NPT2 Others Unspecified Kd = 103.0 nM PMID[454919]
NPT2258 Organism Plasmodium falciparum NF54 Plasmodium falciparum NF54 IC50 = 148.0 nM PMID[454919]
NPT918 Individual Protein Heat shock protein HSP 90-alpha Homo sapiens IC50 = 74.0 nM PMID[454920]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 169.0 nM PMID[454921]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 176.0 nM PMID[454921]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 204.0 nM PMID[454921]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 257.0 nM PMID[454921]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 658.0 nM PMID[454921]
NPT32 Organism Mus musculus Mus musculus Activity = 317.2 U/L PMID[454922]
NPT32 Organism Mus musculus Mus musculus Activity = 273.0 U/L PMID[454922]
NPT918 Individual Protein Heat shock protein HSP 90-alpha Homo sapiens IC50 = 140.0 nM PMID[454922]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. LC50 > 2000.0 nM PMID[454924]
NPT32 Organism Mus musculus Mus musculus Activity = 317.2 U/L PMID[454925]
NPT32 Organism Mus musculus Mus musculus Activity = 273.0 U/L PMID[454925]
NPT918 Individual Protein Heat shock protein HSP 90-alpha Homo sapiens IC50 = 780.0 nM PMID[454925]
NPT27 Others Unspecified IC50 = 141.0 nM PMID[454925]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. IC50 = 40.0 nM PMID[454925]
NPT831 Individual Protein Serine/threonine-protein kinase PLK1 Homo sapiens Thermal melting change = 0.1 degrees C PMID[454926]
NPT22960 SINGLE PROTEIN Serine/threonine-protein kinase VRK1 Homo sapiens Thermal melting change = -0.1 degrees C PMID[454926]
NPT22961 SINGLE PROTEIN Inactive serine/threonine-protein kinase VRK3 Homo sapiens Thermal melting change = -0.7 degrees C PMID[454926]
NPT626 Tissue Liver microsome Homo sapiens Stability = 73.0 % PMID[454927]
NPT626 Tissue Liver microsome Homo sapiens Stability = 75.3 % PMID[454927]
NPT626 Tissue Liver microsome Homo sapiens Stability = 46.6 % PMID[454927]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. IC50 = 150.0 nM PMID[454932]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. IC50 = 56.0 nM PMID[454932]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. IC50 = 30.0 nM PMID[454932]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. IC50 = 30.0 nM PMID[454933]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. IC50 = 60.0 nM PMID[454933]
NPT918 Individual Protein Heat shock protein HSP 90-alpha Homo sapiens Ratio = 2.09 n.a. PMID[454933]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. GI50 = 430.0 nM PMID[454935]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. GI50 = 560.0 nM PMID[454935]
NPT918 Individual Protein Heat shock protein HSP 90-alpha Homo sapiens IC50 = 14.0 nM PMID[454935]
NPT918 Individual Protein Heat shock protein HSP 90-alpha Homo sapiens Ratio = 2.7 n.a. PMID[454937]
NPT2 Others Unspecified IC50 = 1000.0 nM PMID[454938]
NPT2 Others Unspecified Kd = 1200.0 nM PMID[454938]
NPT2264 Protein Family Heat shock protein HSP90 Homo sapiens IC50 = 16.0 nM PMID[454940]
NPT918 Individual Protein Heat shock protein HSP 90-alpha Homo sapiens IC50 = 27.0 nM PMID[454940]
NPT918 Individual Protein Heat shock protein HSP 90-alpha Homo sapiens IC50 = 14.0 nM PMID[454941]
NPT2264 Protein Family Heat shock protein HSP90 Homo sapiens Kd = 1200.0 nM PMID[454943]
NPT2 Others Unspecified IC50 = 1000.0 nM PMID[454944]
NPT2264 Protein Family Heat shock protein HSP90 Homo sapiens IC50 = 70.0 nM PMID[454944]
NPT918 Individual Protein Heat shock protein HSP 90-alpha Homo sapiens IC50 = 41.55 nM PMID[454945]
NPT918 Individual Protein Heat shock protein HSP 90-alpha Homo sapiens IC50 = 53.75 nM PMID[454945]
NPT918 Individual Protein Heat shock protein HSP 90-alpha Homo sapiens IC50 = 49.46 nM PMID[454945]
NPT918 Individual Protein Heat shock protein HSP 90-alpha Homo sapiens IC50 = 44.33 nM PMID[454945]
NPT918 Individual Protein Heat shock protein HSP 90-alpha Homo sapiens IC50 = 42.05 nM PMID[454945]
NPT2 Others Unspecified Kd = 510.0 nM PMID[454946]
NPT919 Individual Protein HSP90 Plasmodium falciparum 3D7 Kd = 169.0 nM PMID[454946]
NPT20556 SINGLE PROTEIN Replicase polyprotein 1ab Severe acute respiratory syndrome coronavirus 2 Inhibition = 25.39 % PMID[454947]
NPT20555 ORGANISM SARS-CoV-2 Severe acute respiratory syndrome coronavirus 2 Inhibition = 2.76 % PMID[454948]
NPT2264 Protein Family Heat shock protein HSP90 Homo sapiens FC = 1.89 n.a. PMID[454949]
NPT2264 Protein Family Heat shock protein HSP90 Homo sapiens FC = 0.43 n.a. PMID[454949]
NPT918 Individual Protein Heat shock protein HSP 90-alpha Homo sapiens IC50 = 100.0 nM PMID[454950]
NPT16 Organism Staphylococcus aureus Staphylococcus aureus MIC > 200.0 ug.mL-1 PMID[454950]
NPT22407 ORGANISM Bacillus amyloliquefaciens Bacillus amyloliquefaciens MIC > 200.0 ug.mL-1 PMID[454950]
NPT22408 ORGANISM Shewanella oneidensis Shewanella oneidensis MIC > 200.0 ug.mL-1 PMID[454950]
NPT22964 CELL-LINE CNE2Z Homo sapiens IC50 = 310.0 nM PMID[454951]
NPT2 Others Unspecified IC50 = 2130.0 nM PMID[454954]
NPT2 Others Unspecified Ratio IC50 = 2.45 n.a. PMID[454954]
NPT2 Others Unspecified Ratio IC50 = 2.27 n.a. PMID[454954]
NPT2 Others Unspecified Ratio IC50 = 2.92 n.a. PMID[454954]
NPT2 Others Unspecified Ratio IC50 = 2.62 n.a. PMID[454954]
NPT2 Others Unspecified Ratio IC50 = 2.15 n.a. PMID[454954]
NPT2 Others Unspecified Kd = 1220.0 nM PMID[454954]
NPT2 Others Unspecified Kd = 10500.0 nM PMID[454954]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC271621 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC27413
1.0 High Similarity NPC59751
0.972 High Similarity NPC5485
0.9541 High Similarity NPC315652
0.9541 High Similarity NPC7905
0.9375 High Similarity NPC473808
0.9292 High Similarity NPC315915
0.9027 High Similarity NPC296361
0.8772 High Similarity NPC316325
0.843 Intermediate Similarity NPC473249
0.7692 Intermediate Similarity NPC133729
0.7652 Intermediate Similarity NPC472616
0.7586 Intermediate Similarity NPC472615
0.7373 Intermediate Similarity NPC251330
0.7273 Intermediate Similarity NPC170375
0.7143 Intermediate Similarity NPC154601
0.7143 Intermediate Similarity NPC314361
0.7143 Intermediate Similarity NPC271269
0.7 Intermediate Similarity NPC469494
0.6967 Remote Similarity NPC24389
0.696 Remote Similarity NPC471645
0.6957 Remote Similarity NPC205546
0.6957 Remote Similarity NPC189764
0.6957 Remote Similarity NPC50902
0.6957 Remote Similarity NPC233273
0.6937 Remote Similarity NPC472614
0.6897 Remote Similarity NPC175614
0.685 Remote Similarity NPC476190
0.6829 Remote Similarity NPC133625
0.6783 Remote Similarity NPC316249
0.6769 Remote Similarity NPC469515
0.6748 Remote Similarity NPC307903
0.6748 Remote Similarity NPC140251
0.6721 Remote Similarity NPC469852
0.6716 Remote Similarity NPC477793
0.6716 Remote Similarity NPC329919
0.6695 Remote Similarity NPC472162
0.6695 Remote Similarity NPC472166
0.6695 Remote Similarity NPC265662
0.6667 Remote Similarity NPC469853
0.6667 Remote Similarity NPC469865
0.6667 Remote Similarity NPC110294
0.6639 Remote Similarity NPC161855
0.6638 Remote Similarity NPC472613
0.6612 Remote Similarity NPC473596
0.661 Remote Similarity NPC288350
0.661 Remote Similarity NPC173329
0.6589 Remote Similarity NPC475642
0.6585 Remote Similarity NPC472749
0.6585 Remote Similarity NPC472751
0.6581 Remote Similarity NPC116930
0.6571 Remote Similarity NPC230889
0.6555 Remote Similarity NPC472167
0.6535 Remote Similarity NPC476269
0.6529 Remote Similarity NPC175531
0.6529 Remote Similarity NPC313234
0.6519 Remote Similarity NPC262845
0.6519 Remote Similarity NPC68293
0.6518 Remote Similarity NPC161670
0.6508 Remote Similarity NPC122926
0.6508 Remote Similarity NPC113012
0.6504 Remote Similarity NPC472748
0.6496 Remote Similarity NPC475098
0.6496 Remote Similarity NPC189651
0.6491 Remote Similarity NPC45409
0.6475 Remote Similarity NPC128501
0.6475 Remote Similarity NPC469598
0.6471 Remote Similarity NPC165332
0.6471 Remote Similarity NPC180722
0.6471 Remote Similarity NPC195645
0.6471 Remote Similarity NPC473291
0.6466 Remote Similarity NPC471399
0.6466 Remote Similarity NPC475879
0.6457 Remote Similarity NPC29501
0.6441 Remote Similarity NPC121825
0.6441 Remote Similarity NPC5418
0.6429 Remote Similarity NPC477786
0.6429 Remote Similarity NPC477784
0.6429 Remote Similarity NPC477785
0.6429 Remote Similarity NPC473578
0.6429 Remote Similarity NPC298484
0.6423 Remote Similarity NPC474563
0.6423 Remote Similarity NPC472747
0.6423 Remote Similarity NPC472750
0.6418 Remote Similarity NPC16709
0.641 Remote Similarity NPC472010
0.6406 Remote Similarity NPC66108
0.6404 Remote Similarity NPC316426
0.6404 Remote Similarity NPC472009
0.6404 Remote Similarity NPC315395
0.6393 Remote Similarity NPC469851
0.6393 Remote Similarity NPC316250
0.6391 Remote Similarity NPC156379
0.6391 Remote Similarity NPC475383
0.6378 Remote Similarity NPC477997
0.6378 Remote Similarity NPC476290
0.6364 Remote Similarity NPC471672
0.6364 Remote Similarity NPC313911
0.6364 Remote Similarity NPC314854
0.6364 Remote Similarity NPC475653
0.6357 Remote Similarity NPC78189
0.6356 Remote Similarity NPC469645
0.6356 Remote Similarity NPC469692
0.6349 Remote Similarity NPC475150
0.6348 Remote Similarity NPC472007
0.6348 Remote Similarity NPC300779
0.6333 Remote Similarity NPC255410
0.6328 Remote Similarity NPC475608
0.6328 Remote Similarity NPC21713
0.6325 Remote Similarity NPC166554
0.6325 Remote Similarity NPC474098
0.6325 Remote Similarity NPC475995
0.6325 Remote Similarity NPC265856
0.632 Remote Similarity NPC201128
0.6303 Remote Similarity NPC477241
0.6303 Remote Similarity NPC65829
0.6296 Remote Similarity NPC315783
0.6293 Remote Similarity NPC116231
0.6293 Remote Similarity NPC60765
0.6293 Remote Similarity NPC475739
0.6293 Remote Similarity NPC472008
0.629 Remote Similarity NPC472755
0.6283 Remote Similarity NPC471595
0.6283 Remote Similarity NPC16488
0.6281 Remote Similarity NPC20066
0.6281 Remote Similarity NPC239895
0.6281 Remote Similarity NPC120299
0.6281 Remote Similarity NPC208094
0.6273 Remote Similarity NPC231739
0.6261 Remote Similarity NPC472161
0.6261 Remote Similarity NPC164393
0.625 Remote Similarity NPC204639
0.625 Remote Similarity NPC300710
0.625 Remote Similarity NPC272050
0.6241 Remote Similarity NPC241050
0.6239 Remote Similarity NPC51358
0.6239 Remote Similarity NPC307092
0.6239 Remote Similarity NPC295448
0.6239 Remote Similarity NPC212598
0.623 Remote Similarity NPC203627
0.623 Remote Similarity NPC166770
0.623 Remote Similarity NPC300584
0.6228 Remote Similarity NPC70424
0.6228 Remote Similarity NPC243618
0.6222 Remote Similarity NPC290261
0.622 Remote Similarity NPC473807
0.6214 Remote Similarity NPC101372
0.621 Remote Similarity NPC189609
0.621 Remote Similarity NPC197835
0.621 Remote Similarity NPC303653
0.621 Remote Similarity NPC140591
0.621 Remote Similarity NPC291500
0.621 Remote Similarity NPC472754
0.6195 Remote Similarity NPC477487
0.6186 Remote Similarity NPC145666
0.6186 Remote Similarity NPC477866
0.6186 Remote Similarity NPC477865
0.6182 Remote Similarity NPC473536
0.6179 Remote Similarity NPC215253
0.6179 Remote Similarity NPC475053
0.6179 Remote Similarity NPC185253
0.6174 Remote Similarity NPC187529
0.6174 Remote Similarity NPC471494
0.6172 Remote Similarity NPC38154
0.6154 Remote Similarity NPC106051
0.6154 Remote Similarity NPC473658
0.6154 Remote Similarity NPC53454
0.6154 Remote Similarity NPC316186
0.6154 Remote Similarity NPC26078
0.6148 Remote Similarity NPC266842
0.6148 Remote Similarity NPC471694
0.6147 Remote Similarity NPC315552
0.6142 Remote Similarity NPC315531
0.6142 Remote Similarity NPC266514
0.6134 Remote Similarity NPC32552
0.6134 Remote Similarity NPC314500
0.6131 Remote Similarity NPC160493
0.6129 Remote Similarity NPC110443
0.6129 Remote Similarity NPC472753
0.6129 Remote Similarity NPC128733
0.6129 Remote Similarity NPC46998
0.6129 Remote Similarity NPC133907
0.6129 Remote Similarity NPC185141
0.6121 Remote Similarity NPC234038
0.6121 Remote Similarity NPC261721
0.6121 Remote Similarity NPC472136
0.6121 Remote Similarity NPC311163
0.6119 Remote Similarity NPC313802
0.6119 Remote Similarity NPC67917
0.6119 Remote Similarity NPC314268
0.6119 Remote Similarity NPC477515
0.6116 Remote Similarity NPC295347
0.6111 Remote Similarity NPC74035
0.6111 Remote Similarity NPC472756
0.6107 Remote Similarity NPC469496
0.6107 Remote Similarity NPC469454
0.6107 Remote Similarity NPC469463
0.6106 Remote Similarity NPC112868
0.6106 Remote Similarity NPC275766
0.6102 Remote Similarity NPC471054

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC271621 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.9533 High Similarity NPD7116 Clinical (unspecified phase)
0.887 High Similarity NPD7299 Clinical (unspecified phase)
0.8772 High Similarity NPD7500 Approved
0.8718 High Similarity NPD7623 Phase 3
0.8718 High Similarity NPD7624 Clinical (unspecified phase)
0.843 Intermediate Similarity NPD7747 Phase 1
0.843 Intermediate Similarity NPD7746 Phase 1
0.8319 Intermediate Similarity NPD7739 Clinical (unspecified phase)
0.7273 Intermediate Similarity NPD7601 Clinical (unspecified phase)
0.6719 Remote Similarity NPD7505 Discontinued
0.6471 Remote Similarity NPD7839 Suspended
0.633 Remote Similarity NPD4756 Discovery
0.6296 Remote Similarity NPD7829 Approved
0.6296 Remote Similarity NPD7830 Approved
0.625 Remote Similarity NPD6421 Discontinued
0.623 Remote Similarity NPD8029 Clinical (unspecified phase)
0.6186 Remote Similarity NPD6698 Approved
0.6186 Remote Similarity NPD46 Approved
0.6172 Remote Similarity NPD6413 Approved
0.6165 Remote Similarity NPD7641 Discontinued
0.6159 Remote Similarity NPD8074 Phase 3
0.6148 Remote Similarity NPD8444 Approved
0.614 Remote Similarity NPD6110 Phase 1
0.6099 Remote Similarity NPD7260 Phase 2
0.605 Remote Similarity NPD7838 Discovery
0.6028 Remote Similarity NPD6914 Discontinued
0.6 Remote Similarity NPD7983 Approved
0.5971 Remote Similarity NPD8273 Phase 1
0.5942 Remote Similarity NPD7642 Approved
0.5917 Remote Similarity NPD5785 Approved
0.5878 Remote Similarity NPD6420 Discontinued
0.5862 Remote Similarity NPD8415 Approved
0.5862 Remote Similarity NPD7154 Phase 3
0.5857 Remote Similarity NPD4816 Clinical (unspecified phase)
0.5833 Remote Similarity NPD8413 Clinical (unspecified phase)
0.5833 Remote Similarity NPD6845 Suspended
0.5822 Remote Similarity NPD8387 Clinical (unspecified phase)
0.5794 Remote Similarity NPD6404 Discontinued
0.5781 Remote Similarity NPD2258 Approved
0.5781 Remote Similarity NPD2259 Approved
0.5763 Remote Similarity NPD5363 Approved
0.5755 Remote Similarity NPD8080 Discontinued
0.5745 Remote Similarity NPD8451 Approved
0.5739 Remote Similarity NPD8259 Clinical (unspecified phase)
0.5725 Remote Similarity NPD6686 Approved
0.5704 Remote Similarity NPD8448 Approved
0.5701 Remote Similarity NPD3704 Approved
0.5701 Remote Similarity NPD6108 Clinical (unspecified phase)
0.5694 Remote Similarity NPD8391 Approved
0.5694 Remote Similarity NPD8392 Approved
0.5694 Remote Similarity NPD8390 Approved
0.5691 Remote Similarity NPD5779 Approved
0.5691 Remote Similarity NPD5778 Approved
0.5674 Remote Similarity NPD8341 Approved
0.5674 Remote Similarity NPD8342 Approved
0.5674 Remote Similarity NPD8340 Approved
0.5674 Remote Similarity NPD8299 Approved
0.5649 Remote Similarity NPD7899 Clinical (unspecified phase)
0.5634 Remote Similarity NPD5108 Clinical (unspecified phase)
0.562 Remote Similarity NPD7115 Discovery

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data