Structure

Physi-Chem Properties

Molecular Weight:  472.36
Volume:  514.542
LogP:  4.415
LogD:  4.3
LogS:  -4.009
# Rotatable Bonds:  3
TPSA:  77.76
# H-Bond Aceptor:  4
# H-Bond Donor:  3
# Rings:  5
# Heavy Atoms:  4

MedChem Properties

QED Drug-Likeness Score:  0.436
Synthetic Accessibility Score:  4.839
Fsp3:  0.9
Lipinski Rule-of-5:  Accepted
Pfizer Rule:  Accepted
GSK Rule:  Rejected
BMS Rule:  0
Golden Triangle Rule:  Accepted
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -5.402
MDCK Permeability:  2.8285374355618842e-05
Pgp-inhibitor:  0.001
Pgp-substrate:  0.0
Human Intestinal Absorption (HIA):  0.006
20% Bioavailability (F20%):  0.866
30% Bioavailability (F30%):  0.916

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.042
Plasma Protein Binding (PPB):  88.29267883300781%
Volume Distribution (VD):  0.572
Pgp-substrate:  3.4601330757141113%

ADMET: Metabolism

CYP1A2-inhibitor:  0.015
CYP1A2-substrate:  0.341
CYP2C19-inhibitor:  0.01
CYP2C19-substrate:  0.913
CYP2C9-inhibitor:  0.123
CYP2C9-substrate:  0.283
CYP2D6-inhibitor:  0.002
CYP2D6-substrate:  0.4
CYP3A4-inhibitor:  0.295
CYP3A4-substrate:  0.156

ADMET: Excretion

Clearance (CL):  2.515
Half-life (T1/2):  0.476

ADMET: Toxicity

hERG Blockers:  0.07
Human Hepatotoxicity (H-HT):  0.264
Drug-inuced Liver Injury (DILI):  0.011
AMES Toxicity:  0.002
Rat Oral Acute Toxicity:  0.268
Maximum Recommended Daily Dose:  0.939
Skin Sensitization:  0.793
Carcinogencity:  0.016
Eye Corrosion:  0.129
Eye Irritation:  0.407
Respiratory Toxicity:  0.945

Download Data

Data Type Select
General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs  

  Natural Product: NPC264005

Natural Product ID:  NPC264005
Common Name*:   23-Hydroxy Betulic Acid
IUPAC Name:   (1R,3aS,5aR,5bR,7aR,8R,9S,11aR,11bR,13aR,13bR)-9-hydroxy-8-(hydroxymethyl)-5a,5b,8,11a-tetramethyl-1-prop-1-en-2-yl-1,2,3,4,5,6,7,7a,9,10,11,11b,12,13,13a,13b-hexadecahydrocyclopenta[a]chrysene-3a-carboxylic acid
Synonyms:   23-Hydroxy Betulic Acid; 23-Hydroxybetulinic Acid; 23-Hydroxybetulinicacid
Standard InCHIKey:  HXWLKAXCQLXHML-WGOZWDAUSA-N
Standard InCHI:  InChI=1S/C30H48O4/c1-18(2)19-9-14-30(25(33)34)16-15-28(5)20(24(19)30)7-8-22-26(3)12-11-23(32)27(4,17-31)21(26)10-13-29(22,28)6/h19-24,31-32H,1,7-17H2,2-6H3,(H,33,34)/t19-,20+,21+,22+,23-,24+,26-,27-,28+,29+,30-/m0/s1
SMILES:  C=C(C)[C@@H]1CC[C@@]2(CC[C@]3(C)[C@H](CC[C@@H]4[C@@]5(C)CC[C@@H]([C@@](C)(CO)[C@@H]5CC[C@@]34C)O)[C@@H]12)C(=O)O
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL251308
PubChem CID:   21672692
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000012] Lipids and lipid-like molecules
      • [CHEMONTID:0000259] Prenol lipids
        • [CHEMONTID:0001553] Triterpenoids

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO9798 Paeonia lactiflora Species Paeoniaceae Eukaryota Seeds Henan province, China DOI[10.1016/j.foodres.2020.109416]
NPO9798 Paeonia lactiflora Species Paeoniaceae Eukaryota Seeds Shandong province, China DOI[10.1016/j.foodres.2020.109416]
NPO9798 Paeonia lactiflora Species Paeoniaceae Eukaryota Seeds Shanxi province, China DOI[10.1016/j.foodres.2020.109416]
NPO9798 Paeonia lactiflora Species Paeoniaceae Eukaryota Seeds Anhui province, China DOI[10.1016/j.foodres.2020.109416]
NPO9798 Paeonia lactiflora Species Paeoniaceae Eukaryota Seeds Gansu province, China DOI[10.1016/j.foodres.2020.109416]
NPO9798 Paeonia lactiflora Species Paeoniaceae Eukaryota n.a. root n.a. DOI[10.2174/092986712800229032]
NPO1373 Pulsatilla chinensis Species Ranunculaceae Eukaryota roots n.a. n.a. PMID[10514313]
NPO1373 Pulsatilla chinensis Species Ranunculaceae Eukaryota n.a. root n.a. PMID[10514313]
NPO1373 Pulsatilla chinensis Species Ranunculaceae Eukaryota roots n.a. n.a. PMID[11575962]
NPO9798 Paeonia lactiflora Species Paeoniaceae Eukaryota n.a. n.a. n.a. PMID[19402674]
NPO9798 Paeonia lactiflora Species Paeoniaceae Eukaryota n.a. root n.a. PMID[19721258]
NPO9798 Paeonia lactiflora Species Paeoniaceae Eukaryota n.a. root n.a. PMID[19772486]
NPO9798 Paeonia lactiflora Species Paeoniaceae Eukaryota Roots n.a. n.a. PMID[20806783]
NPO9798 Paeonia lactiflora Species Paeoniaceae Eukaryota n.a. root n.a. PMID[21782011]
NPO15265 Paeonia rockii Species Paeoniaceae Eukaryota roots Whitessence Srl, Viterbo, Italy 2005-OCT PMID[21954959]
NPO15265 Paeonia rockii Species Paeoniaceae Eukaryota n.a. root n.a. PMID[21954959]
NPO9798 Paeonia lactiflora Species Paeoniaceae Eukaryota n.a. root n.a. PMID[22190295]
NPO15265 Paeonia rockii Species Paeoniaceae Eukaryota n.a. seed n.a. PMID[23497864]
NPO9798 Paeonia lactiflora Species Paeoniaceae Eukaryota n.a. seed n.a. PMID[23497864]
NPO9798 Paeonia lactiflora Species Paeoniaceae Eukaryota n.a. root n.a. PMID[26838074]
NPO9798 Paeonia lactiflora Species Paeoniaceae Eukaryota n.a. root n.a. PMID[27313650]
NPO9798 Paeonia lactiflora Species Paeoniaceae Eukaryota n.a. root n.a. PMID[27429639]
NPO9798 Paeonia lactiflora Species Paeoniaceae Eukaryota Roots n.a. n.a. PMID[29741372]
NPO15265 Paeonia rockii Species Paeoniaceae Eukaryota Seeds DingXi, GanSu, China early autumn (from August to the beginning of September PMID[32545196]
NPO15265 Paeonia rockii Species Paeoniaceae Eukaryota Seeds LanZhou, GanSu, China early autumn (from August to the beginning of September PMID[32545196]
NPO9798 Paeonia lactiflora Species Paeoniaceae Eukaryota Seeds HeZe, ShanDong, China early autumn (from August to the beginning of September PMID[32545196]
NPO9798 Paeonia lactiflora Species Paeoniaceae Eukaryota Roots n.a. n.a. PMID[32951423]
NPO9798 Paeonia lactiflora Species Paeoniaceae Eukaryota Seeds Xinjiang,China PMID[33063333]
NPO15265 Paeonia rockii Species Paeoniaceae Eukaryota Fruits Yangling, Shaanxi, China Maturation PMID[33131958]
NPO15265 Paeonia rockii Species Paeoniaceae Eukaryota Seeds Yangling, Shaanxi, China 10 days after pollination PMID[33131958]
NPO15265 Paeonia rockii Species Paeoniaceae Eukaryota Seeds Yangling, Shaanxi, China 20 days after pollination PMID[33131958]
NPO15265 Paeonia rockii Species Paeoniaceae Eukaryota Seeds Yangling, Shaanxi, China 30 days after pollination PMID[33131958]
NPO15265 Paeonia rockii Species Paeoniaceae Eukaryota Seeds Yangling, Shaanxi, China 40 days after pollination PMID[33131958]
NPO15265 Paeonia rockii Species Paeoniaceae Eukaryota Fruits Yangling, Shaanxi, China 10 days after pollination PMID[33131958]
NPO15265 Paeonia rockii Species Paeoniaceae Eukaryota Seeds Yangling, Shaanxi, China 50 days after pollination PMID[33131958]
NPO15265 Paeonia rockii Species Paeoniaceae Eukaryota Fruits Yangling, Shaanxi, China 20 days after pollination PMID[33131958]
NPO15265 Paeonia rockii Species Paeoniaceae Eukaryota Seeds Yangling, Shaanxi, China 60 days after pollination PMID[33131958]
NPO15265 Paeonia rockii Species Paeoniaceae Eukaryota Fruits Yangling, Shaanxi, China 30 days after pollination PMID[33131958]
NPO15265 Paeonia rockii Species Paeoniaceae Eukaryota Seeds Yangling, Shaanxi, China 70 days after pollination PMID[33131958]
NPO15265 Paeonia rockii Species Paeoniaceae Eukaryota Fruits Yangling, Shaanxi, China 40 days after pollination PMID[33131958]
NPO15265 Paeonia rockii Species Paeoniaceae Eukaryota Seeds Yangling, Shaanxi, China 80 days after pollination PMID[33131958]
NPO15265 Paeonia rockii Species Paeoniaceae Eukaryota Fruits Yangling, Shaanxi, China 50 days after pollination PMID[33131958]
NPO15265 Paeonia rockii Species Paeoniaceae Eukaryota Seeds Yangling, Shaanxi, China 90 days after pollination PMID[33131958]
NPO15265 Paeonia rockii Species Paeoniaceae Eukaryota Fruits Yangling, Shaanxi, China 60 days after pollination PMID[33131958]
NPO15265 Paeonia rockii Species Paeoniaceae Eukaryota Seeds Yangling, Shaanxi, China Maturation PMID[33131958]
NPO15265 Paeonia rockii Species Paeoniaceae Eukaryota Fruits Yangling, Shaanxi, China 70 days after pollination PMID[33131958]
NPO15265 Paeonia rockii Species Paeoniaceae Eukaryota Fruits Yangling, Shaanxi, China 80 days after pollination PMID[33131958]
NPO15265 Paeonia rockii Species Paeoniaceae Eukaryota Fruits Yangling, Shaanxi, China 90 days after pollination PMID[33131958]
NPO1373 Pulsatilla chinensis Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO9798 Paeonia lactiflora Species Paeoniaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO9798 Paeonia lactiflora Species Paeoniaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO1373 Pulsatilla chinensis Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO1373 Pulsatilla chinensis Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO9798 Paeonia lactiflora Species Paeoniaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO9798 Paeonia lactiflora Species Paeoniaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO1373 Pulsatilla chinensis Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO18782.1 Pulsatilla cernua var. koreana Varieties Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO18782.1 Pulsatilla cernua var. koreana Varieties Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15265 Paeonia rockii Species Paeoniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9798 Paeonia lactiflora Species Paeoniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1373 Pulsatilla chinensis Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT81 Cell Line A549 Homo sapiens IC50 = 87600.0 nM PMID[476708]
NPT181 Cell Line Bel-7402 Homo sapiens IC50 = 97320.0 nM PMID[476708]
NPT319 Cell Line B16 Mus musculus IC50 = 83040.0 nM PMID[476708]
NPT76 Cell Line C6 Rattus norvegicus IC50 = 99480.0 nM PMID[476708]
NPT1357 Cell Line H22 Mus musculus Activity = 1.42 g PMID[476708]
NPT1357 Cell Line H22 Mus musculus Inhibition = 10.1 % PMID[476708]
NPT319 Cell Line B16 Mus musculus Activity = 1.76 g PMID[476708]
NPT319 Cell Line B16 Mus musculus Inhibition = 13.3 % PMID[476708]
NPT2681 Individual Protein Glycogen phosphorylase, muscle form Oryctolagus cuniculus IC50 = 16000.0 nM PMID[476709]
NPT2681 Individual Protein Glycogen phosphorylase, muscle form Oryctolagus cuniculus IC50 = 103000.0 nM PMID[476710]
NPT319 Cell Line B16 Mus musculus IC50 = 18680.0 nM PMID[476711]
NPT65 Cell Line HepG2 Homo sapiens IC50 = 41410.0 nM PMID[476711]
NPT1083 Cell Line A-375 Homo sapiens IC50 = 41990.0 nM PMID[476711]
NPT165 Cell Line HeLa Homo sapiens IC50 = 46220.0 nM PMID[476711]
NPT83 Cell Line MCF7 Homo sapiens IC50 = 46610.0 nM PMID[476711]
NPT2681 Individual Protein Glycogen phosphorylase, muscle form Oryctolagus cuniculus IC50 = 16000.0 nM PMID[476712]
NPT2681 Individual Protein Glycogen phosphorylase, muscle form Oryctolagus cuniculus IC50 = 15848.93 nM PMID[476712]
NPT387 Cell Line M14 Homo sapiens IC50 = 50000.0 nM PMID[476713]
NPT165 Cell Line HeLa Homo sapiens IC50 = 52390.0 nM PMID[476715]
NPT319 Cell Line B16 Mus musculus IC50 = 29870.0 nM PMID[476715]
NPT1357 Cell Line H22 Mus musculus Inhibition = 27.8 % PMID[476715]
NPT319 Cell Line B16 Mus musculus Inhibition = 32.4 % PMID[476715]
NPT165 Cell Line HeLa Homo sapiens IC50 = 52390.0 nM PMID[476716]
NPT319 Cell Line B16 Mus musculus IC50 = 29870.0 nM PMID[476716]
NPT1357 Cell Line H22 Mus musculus Inhibition = 27.8 % PMID[476716]
NPT319 Cell Line B16 Mus musculus Inhibition = 32.4 % PMID[476716]
NPT165 Cell Line HeLa Homo sapiens IC50 = 52390.0 nM PMID[476717]
NPT319 Cell Line B16 Mus musculus IC50 = 29870.0 nM PMID[476717]
NPT1357 Cell Line H22 Mus musculus Inhibition = 27.8 % PMID[476717]
NPT319 Cell Line B16 Mus musculus Inhibition = 32.4 % PMID[476717]
NPT169 Cell Line B16-F10 Mus musculus IC50 = 24460.0 nM PMID[476718]
NPT83 Cell Line MCF7 Homo sapiens IC50 = 20830.0 nM PMID[476718]
NPT169 Cell Line B16-F10 Mus musculus Activity = 10.57 % PMID[476718]
NPT169 Cell Line B16-F10 Mus musculus Activity = 22.85 % PMID[476718]
NPT169 Cell Line B16-F10 Mus musculus Activity = 42.87 % PMID[476718]
NPT65 Cell Line HepG2 Homo sapiens IC50 = 71840.0 nM PMID[476719]
NPT83 Cell Line MCF7 Homo sapiens IC50 = 74980.0 nM PMID[476719]
NPT1083 Cell Line A-375 Homo sapiens IC50 = 76300.0 nM PMID[476719]
NPT179 Cell Line A2780 Homo sapiens IC50 = 79120.0 nM PMID[476719]
NPT203 Individual Protein Carboxylesterase 2 Homo sapiens IC50 = 1900.0 nM PMID[476720]
NPT166 Individual Protein Acyl coenzyme A:cholesterol acyltransferase Homo sapiens IC50 = 100.0 nM PMID[476720]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. IC50 = 104540.0 nM PMID[476708]
NPT747 Organism Acinetobacter baumannii Acinetobacter baumannii MIC > 128.0 ug.mL-1 PMID[476714]
NPT18 Organism Pseudomonas aeruginosa Pseudomonas aeruginosa MIC > 128.0 ug.mL-1 PMID[476714]
NPT19 Organism Escherichia coli Escherichia coli MIC > 128.0 ug.mL-1 PMID[476714]
NPT2709 Organism Bacillus subtilis subsp. subtilis str. 168 Bacillus subtilis subsp. subtilis str. 168 MIC = 8.0 ug.mL-1 PMID[476714]
NPT1101 Organism Staphylococcus aureus subsp. aureus RN4220 Staphylococcus aureus subsp. aureus RN4220 MIC = 16.0 ug.mL-1 PMID[476714]
NPT16 Organism Staphylococcus aureus Staphylococcus aureus MIC = 16.0 ug.mL-1 PMID[476714]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. IC50 = 43400.0 nM PMID[476715]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. IC50 = 39670.0 nM PMID[476715]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. IC50 = 45150.0 nM PMID[476715]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. IC50 = 45150.0 nM PMID[476716]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. IC50 = 39670.0 nM PMID[476716]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. IC50 = 43400.0 nM PMID[476716]
NPT32 Organism Mus musculus Mus musculus Activity = 26.1 g PMID[476716]
NPT32 Organism Mus musculus Mus musculus Activity = 26.7 g PMID[476716]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. IC50 = 45150.0 nM PMID[476717]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. IC50 = 39670.0 nM PMID[476717]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. IC50 = 43400.0 nM PMID[476717]
NPT32 Organism Mus musculus Mus musculus Activity = 26.1 g PMID[476717]
NPT32 Organism Mus musculus Mus musculus Activity = 26.7 g PMID[476717]
NPT2 Others Unspecified IC50 = 31490.0 nM PMID[476718]
NPT21742 CELL-LINE L02 Homo sapiens IC50 = 79150.0 nM PMID[476719]
NPT2 Others Unspecified IC50 = 70330.0 nM PMID[476719]
NPT2 Others Unspecified Ratio IC50 = 30.0 n.a. PMID[476720]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC264005 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC269360
0.9877 High Similarity NPC2783
0.9759 High Similarity NPC213832
0.9759 High Similarity NPC57954
0.9756 High Similarity NPC33768
0.9753 High Similarity NPC264317
0.9753 High Similarity NPC294438
0.9639 High Similarity NPC471900
0.9639 High Similarity NPC474719
0.9639 High Similarity NPC16377
0.9634 High Similarity NPC12774
0.9524 High Similarity NPC220498
0.9419 High Similarity NPC473690
0.9419 High Similarity NPC287118
0.9419 High Similarity NPC471902
0.9412 High Similarity NPC169933
0.9405 High Similarity NPC4309
0.931 High Similarity NPC277399
0.9302 High Similarity NPC471901
0.9302 High Similarity NPC475416
0.9294 High Similarity NPC247312
0.9294 High Similarity NPC271974
0.9268 High Similarity NPC472743
0.9268 High Similarity NPC475726
0.9195 High Similarity NPC224060
0.9195 High Similarity NPC244356
0.9195 High Similarity NPC291373
0.9176 High Similarity NPC146937
0.9157 High Similarity NPC474482
0.9157 High Similarity NPC74595
0.9157 High Similarity NPC475745
0.9157 High Similarity NPC264665
0.908 High Similarity NPC160506
0.907 High Similarity NPC475921
0.907 High Similarity NPC474704
0.9048 High Similarity NPC292553
0.9048 High Similarity NPC201655
0.9048 High Similarity NPC98270
0.9036 High Similarity NPC471037
0.8941 High Similarity NPC472738
0.8941 High Similarity NPC187545
0.8941 High Similarity NPC98236
0.8941 High Similarity NPC80590
0.8941 High Similarity NPC269396
0.8929 High Similarity NPC475509
0.8929 High Similarity NPC474233
0.8876 High Similarity NPC303863
0.8851 High Similarity NPC61543
0.8851 High Similarity NPC59263
0.8851 High Similarity NPC234346
0.8851 High Similarity NPC127689
0.8851 High Similarity NPC225585
0.8851 High Similarity NPC263393
0.8851 High Similarity NPC130520
0.8851 High Similarity NPC270768
0.8851 High Similarity NPC121798
0.8851 High Similarity NPC293048
0.8837 High Similarity NPC142361
0.8837 High Similarity NPC4643
0.8837 High Similarity NPC57469
0.8837 High Similarity NPC134197
0.8837 High Similarity NPC474684
0.881 High Similarity NPC245866
0.881 High Similarity NPC5280
0.878 High Similarity NPC201459
0.878 High Similarity NPC192744
0.8778 High Similarity NPC288906
0.8778 High Similarity NPC205173
0.8778 High Similarity NPC266431
0.8778 High Similarity NPC263135
0.8765 High Similarity NPC298168
0.8765 High Similarity NPC143133
0.8765 High Similarity NPC474433
0.8765 High Similarity NPC68828
0.8764 High Similarity NPC294263
0.8764 High Similarity NPC475061
0.875 High Similarity NPC126369
0.875 High Similarity NPC111110
0.875 High Similarity NPC130278
0.875 High Similarity NPC470589
0.8736 High Similarity NPC211162
0.8736 High Similarity NPC183374
0.8736 High Similarity NPC472739
0.8736 High Similarity NPC52169
0.8736 High Similarity NPC242864
0.8736 High Similarity NPC182797
0.8721 High Similarity NPC168231
0.8721 High Similarity NPC70661
0.8721 High Similarity NPC28252
0.8721 High Similarity NPC55309
0.8681 High Similarity NPC234564
0.8652 High Similarity NPC966
0.8652 High Similarity NPC288833
0.8652 High Similarity NPC228784
0.8652 High Similarity NPC189520
0.8652 High Similarity NPC324341
0.8652 High Similarity NPC155120
0.8652 High Similarity NPC282616
0.8642 High Similarity NPC78067
0.8642 High Similarity NPC246445
0.8642 High Similarity NPC278091
0.8642 High Similarity NPC4209
0.8642 High Similarity NPC93662
0.8636 High Similarity NPC274330
0.8636 High Similarity NPC143232
0.8636 High Similarity NPC25906
0.8636 High Similarity NPC198664
0.8636 High Similarity NPC64872
0.8636 High Similarity NPC290972
0.8621 High Similarity NPC293564
0.8621 High Similarity NPC242468
0.8621 High Similarity NPC18064
0.8621 High Similarity NPC307426
0.8621 High Similarity NPC102683
0.8621 High Similarity NPC68160
0.8621 High Similarity NPC88716
0.8621 High Similarity NPC130577
0.8621 High Similarity NPC98442
0.8621 High Similarity NPC51700
0.8621 High Similarity NPC187376
0.8621 High Similarity NPC142415
0.8621 High Similarity NPC159046
0.8621 High Similarity NPC171203
0.8621 High Similarity NPC233836
0.8605 High Similarity NPC76518
0.8587 High Similarity NPC253586
0.8571 High Similarity NPC210214
0.8571 High Similarity NPC474484
0.8571 High Similarity NPC279974
0.8571 High Similarity NPC103754
0.8556 High Similarity NPC470376
0.8556 High Similarity NPC86368
0.8556 High Similarity NPC470375
0.8556 High Similarity NPC229281
0.8539 High Similarity NPC477872
0.8539 High Similarity NPC471896
0.8539 High Similarity NPC227467
0.8539 High Similarity NPC7260
0.8539 High Similarity NPC86372
0.8539 High Similarity NPC120968
0.8539 High Similarity NPC273621
0.8539 High Similarity NPC46758
0.8539 High Similarity NPC18872
0.8539 High Similarity NPC469400
0.8539 High Similarity NPC210037
0.8539 High Similarity NPC172361
0.8539 High Similarity NPC291028
0.8539 High Similarity NPC290614
0.8537 High Similarity NPC66105
0.8537 High Similarity NPC207010
0.8537 High Similarity NPC317913
0.8523 High Similarity NPC470629
0.8523 High Similarity NPC181225
0.8523 High Similarity NPC290690
0.8523 High Similarity NPC473242
0.8523 High Similarity NPC17733
0.8523 High Similarity NPC246708
0.8523 High Similarity NPC474512
0.8523 High Similarity NPC40552
0.8519 High Similarity NPC240235
0.8519 High Similarity NPC212879
0.8519 High Similarity NPC212733
0.8519 High Similarity NPC104387
0.8519 High Similarity NPC231256
0.8519 High Similarity NPC178383
0.8506 High Similarity NPC155011
0.8506 High Similarity NPC72638
0.8495 Intermediate Similarity NPC119036
0.8488 Intermediate Similarity NPC299963
0.8488 Intermediate Similarity NPC263974
0.8478 Intermediate Similarity NPC327788
0.8471 Intermediate Similarity NPC289486
0.8471 Intermediate Similarity NPC30583
0.8471 Intermediate Similarity NPC61107
0.8471 Intermediate Similarity NPC170985
0.8462 Intermediate Similarity NPC299996
0.8462 Intermediate Similarity NPC20235
0.8462 Intermediate Similarity NPC88116
0.8462 Intermediate Similarity NPC231063
0.8462 Intermediate Similarity NPC145667
0.8462 Intermediate Similarity NPC282395
0.8462 Intermediate Similarity NPC114159
0.8462 Intermediate Similarity NPC32407
0.8462 Intermediate Similarity NPC47853
0.8462 Intermediate Similarity NPC191412
0.8462 Intermediate Similarity NPC159365
0.8462 Intermediate Similarity NPC222047
0.8462 Intermediate Similarity NPC263548
0.8462 Intermediate Similarity NPC6818
0.8452 Intermediate Similarity NPC261616
0.8452 Intermediate Similarity NPC164999
0.8452 Intermediate Similarity NPC206735
0.8452 Intermediate Similarity NPC304194
0.8444 Intermediate Similarity NPC212301
0.8444 Intermediate Similarity NPC211403
0.8444 Intermediate Similarity NPC6255
0.8444 Intermediate Similarity NPC84319
0.8444 Intermediate Similarity NPC145067
0.8444 Intermediate Similarity NPC187722
0.8444 Intermediate Similarity NPC105189

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC264005 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.9753 High Similarity NPD7520 Clinical (unspecified phase)
0.908 High Similarity NPD8034 Phase 2
0.908 High Similarity NPD8035 Phase 2
0.8642 High Similarity NPD6117 Approved
0.8537 High Similarity NPD6116 Phase 1
0.8444 Intermediate Similarity NPD7515 Phase 2
0.8434 Intermediate Similarity NPD6697 Approved
0.8434 Intermediate Similarity NPD6118 Approved
0.8434 Intermediate Similarity NPD6115 Approved
0.8434 Intermediate Similarity NPD6114 Approved
0.8395 Intermediate Similarity NPD6113 Clinical (unspecified phase)
0.8068 Intermediate Similarity NPD4786 Approved
0.8065 Intermediate Similarity NPD7748 Approved
0.8022 Intermediate Similarity NPD5328 Approved
0.7957 Intermediate Similarity NPD6399 Phase 3
0.7955 Intermediate Similarity NPD4788 Approved
0.7927 Intermediate Similarity NPD4808 Clinical (unspecified phase)
0.7927 Intermediate Similarity NPD4809 Clinical (unspecified phase)
0.7889 Intermediate Similarity NPD3618 Phase 1
0.7849 Intermediate Similarity NPD6079 Approved
0.7841 Intermediate Similarity NPD3667 Approved
0.7816 Intermediate Similarity NPD7525 Registered
0.7812 Intermediate Similarity NPD7902 Approved
0.78 Intermediate Similarity NPD5739 Approved
0.78 Intermediate Similarity NPD7128 Approved
0.78 Intermediate Similarity NPD6675 Approved
0.78 Intermediate Similarity NPD6402 Approved
0.7732 Intermediate Similarity NPD7638 Approved
0.7683 Intermediate Similarity NPD3699 Clinical (unspecified phase)
0.7683 Intermediate Similarity NPD3700 Clinical (unspecified phase)
0.7653 Intermediate Similarity NPD7640 Approved
0.7653 Intermediate Similarity NPD7639 Approved
0.7647 Intermediate Similarity NPD7320 Approved
0.7647 Intermediate Similarity NPD6899 Approved
0.7647 Intermediate Similarity NPD6881 Approved
0.7629 Intermediate Similarity NPD6084 Phase 2
0.7629 Intermediate Similarity NPD6083 Phase 2
0.7629 Intermediate Similarity NPD4755 Approved
0.7579 Intermediate Similarity NPD4202 Approved
0.7573 Intermediate Similarity NPD6373 Approved
0.7573 Intermediate Similarity NPD6372 Approved
0.7549 Intermediate Similarity NPD5701 Approved
0.7549 Intermediate Similarity NPD5697 Approved
0.7527 Intermediate Similarity NPD7513 Clinical (unspecified phase)
0.7526 Intermediate Similarity NPD4697 Phase 3
0.7526 Intermediate Similarity NPD5221 Approved
0.7526 Intermediate Similarity NPD5222 Approved
0.7526 Intermediate Similarity NPD5220 Clinical (unspecified phase)
0.75 Intermediate Similarity NPD7290 Approved
0.75 Intermediate Similarity NPD7901 Clinical (unspecified phase)
0.75 Intermediate Similarity NPD6081 Approved
0.75 Intermediate Similarity NPD6883 Approved
0.75 Intermediate Similarity NPD7645 Phase 2
0.75 Intermediate Similarity NPD7102 Approved
0.75 Intermediate Similarity NPD7900 Approved
0.7475 Intermediate Similarity NPD5285 Approved
0.7475 Intermediate Similarity NPD5286 Approved
0.7475 Intermediate Similarity NPD4700 Approved
0.7475 Intermediate Similarity NPD4696 Approved
0.7473 Intermediate Similarity NPD3666 Approved
0.7473 Intermediate Similarity NPD3665 Phase 1
0.7473 Intermediate Similarity NPD3133 Approved
0.7449 Intermediate Similarity NPD5173 Approved
0.7447 Intermediate Similarity NPD4753 Phase 2
0.7442 Intermediate Similarity NPD3703 Phase 2
0.7429 Intermediate Similarity NPD6869 Approved
0.7429 Intermediate Similarity NPD6650 Approved
0.7429 Intermediate Similarity NPD8130 Phase 1
0.7429 Intermediate Similarity NPD6649 Approved
0.7429 Intermediate Similarity NPD6617 Approved
0.7429 Intermediate Similarity NPD6847 Approved
0.7404 Intermediate Similarity NPD6012 Approved
0.7404 Intermediate Similarity NPD6013 Approved
0.7404 Intermediate Similarity NPD6014 Approved
0.7381 Intermediate Similarity NPD4244 Approved
0.7381 Intermediate Similarity NPD4245 Approved
0.7381 Intermediate Similarity NPD4789 Approved
0.7358 Intermediate Similarity NPD8297 Approved
0.7358 Intermediate Similarity NPD6882 Approved
0.7349 Intermediate Similarity NPD5361 Clinical (unspecified phase)
0.7349 Intermediate Similarity NPD5360 Phase 3
0.734 Intermediate Similarity NPD6672 Approved
0.734 Intermediate Similarity NPD5737 Approved
0.7327 Intermediate Similarity NPD5224 Approved
0.7327 Intermediate Similarity NPD5211 Phase 2
0.7327 Intermediate Similarity NPD5225 Approved
0.7327 Intermediate Similarity NPD5226 Approved
0.7327 Intermediate Similarity NPD4633 Approved
0.7317 Intermediate Similarity NPD4224 Phase 2
0.7312 Intermediate Similarity NPD6684 Approved
0.7312 Intermediate Similarity NPD5330 Approved
0.7312 Intermediate Similarity NPD7334 Approved
0.7312 Intermediate Similarity NPD7146 Approved
0.7312 Intermediate Similarity NPD7521 Approved
0.7312 Intermediate Similarity NPD6409 Approved
0.7308 Intermediate Similarity NPD6011 Approved
0.729 Intermediate Similarity NPD8133 Approved
0.7283 Intermediate Similarity NPD3668 Phase 3
0.7264 Intermediate Similarity NPD6401 Clinical (unspecified phase)
0.7262 Intermediate Similarity NPD3698 Phase 2
0.7262 Intermediate Similarity NPD4267 Clinical (unspecified phase)
0.7255 Intermediate Similarity NPD5175 Approved
0.7255 Intermediate Similarity NPD5174 Approved
0.7248 Intermediate Similarity NPD7115 Discovery
0.7245 Intermediate Similarity NPD5695 Phase 3
0.7241 Intermediate Similarity NPD7339 Approved
0.7241 Intermediate Similarity NPD6942 Approved
0.7228 Intermediate Similarity NPD5223 Approved
0.72 Intermediate Similarity NPD5696 Approved
0.7195 Intermediate Similarity NPD3171 Clinical (unspecified phase)
0.7184 Intermediate Similarity NPD5141 Approved
0.7158 Intermediate Similarity NPD6903 Approved
0.7157 Intermediate Similarity NPD7632 Discontinued
0.7128 Intermediate Similarity NPD5279 Phase 3
0.7115 Intermediate Similarity NPD4768 Approved
0.7115 Intermediate Similarity NPD4767 Approved
0.7093 Intermediate Similarity NPD5777 Approved
0.7087 Intermediate Similarity NPD4754 Approved
0.7071 Intermediate Similarity NPD4629 Approved
0.7071 Intermediate Similarity NPD5210 Approved
0.7071 Intermediate Similarity NPD6356 Clinical (unspecified phase)
0.7065 Intermediate Similarity NPD4221 Approved
0.7065 Intermediate Similarity NPD4223 Phase 3
0.7045 Intermediate Similarity NPD3702 Approved
0.7021 Intermediate Similarity NPD5329 Approved
0.7 Intermediate Similarity NPD3671 Phase 1
0.7 Intermediate Similarity NPD5784 Clinical (unspecified phase)
0.7 Intermediate Similarity NPD6274 Approved
0.7 Intermediate Similarity NPD6868 Approved
0.6981 Remote Similarity NPD4730 Approved
0.6981 Remote Similarity NPD4729 Approved
0.6981 Remote Similarity NPD5128 Approved
0.6972 Remote Similarity NPD4632 Approved
0.6966 Remote Similarity NPD3701 Clinical (unspecified phase)
0.6964 Remote Similarity NPD7101 Approved
0.6964 Remote Similarity NPD7100 Approved
0.6947 Remote Similarity NPD3574 Clinical (unspecified phase)
0.6947 Remote Similarity NPD6098 Approved
0.6939 Remote Similarity NPD6411 Approved
0.6939 Remote Similarity NPD5281 Approved
0.6939 Remote Similarity NPD5284 Approved
0.6915 Remote Similarity NPD4197 Approved
0.6907 Remote Similarity NPD6904 Approved
0.6907 Remote Similarity NPD6673 Approved
0.6907 Remote Similarity NPD7285 Clinical (unspecified phase)
0.6907 Remote Similarity NPD6080 Approved
0.6897 Remote Similarity NPD7507 Approved
0.6897 Remote Similarity NPD4758 Discontinued
0.6887 Remote Similarity NPD6412 Phase 2
0.6875 Remote Similarity NPD6335 Approved
0.6852 Remote Similarity NPD5247 Approved
0.6852 Remote Similarity NPD5251 Approved
0.6852 Remote Similarity NPD5248 Approved
0.6852 Remote Similarity NPD5249 Phase 3
0.6852 Remote Similarity NPD5250 Approved
0.6852 Remote Similarity NPD4634 Approved
0.6842 Remote Similarity NPD6909 Approved
0.6842 Remote Similarity NPD6908 Approved
0.6822 Remote Similarity NPD5168 Approved
0.6813 Remote Similarity NPD5364 Discontinued
0.6813 Remote Similarity NPD3617 Approved
0.6796 Remote Similarity NPD8418 Phase 2
0.6792 Remote Similarity NPD6008 Approved
0.6789 Remote Similarity NPD5216 Approved
0.6789 Remote Similarity NPD5217 Approved
0.6789 Remote Similarity NPD5215 Approved
0.6786 Remote Similarity NPD6009 Approved
0.6786 Remote Similarity NPD6317 Approved
0.678 Remote Similarity NPD7736 Approved
0.6771 Remote Similarity NPD4138 Approved
0.6771 Remote Similarity NPD4688 Approved
0.6771 Remote Similarity NPD4690 Approved
0.6771 Remote Similarity NPD5205 Approved
0.6771 Remote Similarity NPD4693 Phase 3
0.6771 Remote Similarity NPD4689 Approved
0.6768 Remote Similarity NPD7637 Suspended
0.6759 Remote Similarity NPD8132 Clinical (unspecified phase)
0.6754 Remote Similarity NPD6319 Approved
0.6742 Remote Similarity NPD6926 Approved
0.6742 Remote Similarity NPD6924 Approved
0.6735 Remote Similarity NPD5764 Clinical (unspecified phase)
0.6735 Remote Similarity NPD6101 Approved
0.6726 Remote Similarity NPD6313 Approved
0.6726 Remote Similarity NPD6314 Approved
0.6723 Remote Similarity NPD7319 Approved
0.6701 Remote Similarity NPD3573 Approved
0.6699 Remote Similarity NPD4225 Approved
0.6697 Remote Similarity NPD5134 Clinical (unspecified phase)
0.6697 Remote Similarity NPD5135 Approved
0.6697 Remote Similarity NPD5169 Approved
0.6667 Remote Similarity NPD5345 Clinical (unspecified phase)
0.6667 Remote Similarity NPD7492 Approved
0.6667 Remote Similarity NPD5368 Approved
0.6637 Remote Similarity NPD8295 Clinical (unspecified phase)
0.6636 Remote Similarity NPD5127 Approved
0.6634 Remote Similarity NPD6001 Approved
0.6633 Remote Similarity NPD5208 Approved
0.6632 Remote Similarity NPD5362 Discontinued
0.661 Remote Similarity NPD6616 Approved
0.6609 Remote Similarity NPD6059 Approved

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data