Structure

Physi-Chem Properties

Molecular Weight:  440.37
Volume:  496.961
LogP:  5.437
LogD:  5.206
LogS:  -5.596
# Rotatable Bonds:  2
TPSA:  37.3
# H-Bond Aceptor:  2
# H-Bond Donor:  1
# Rings:  5
# Heavy Atoms:  2

MedChem Properties

QED Drug-Likeness Score:  0.461
Synthetic Accessibility Score:  4.74
Fsp3:  0.9
Lipinski Rule-of-5:  Accepted
Pfizer Rule:  Rejected
GSK Rule:  Rejected
BMS Rule:  0
Golden Triangle Rule:  Rejected
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -5.248
MDCK Permeability:  1.2907516975246836e-05
Pgp-inhibitor:  0.024
Pgp-substrate:  0.0
Human Intestinal Absorption (HIA):  0.004
20% Bioavailability (F20%):  0.709
30% Bioavailability (F30%):  0.982

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.011
Plasma Protein Binding (PPB):  89.73944854736328%
Volume Distribution (VD):  1.015
Pgp-substrate:  1.8414162397384644%

ADMET: Metabolism

CYP1A2-inhibitor:  0.062
CYP1A2-substrate:  0.651
CYP2C19-inhibitor:  0.09
CYP2C19-substrate:  0.96
CYP2C9-inhibitor:  0.195
CYP2C9-substrate:  0.706
CYP2D6-inhibitor:  0.035
CYP2D6-substrate:  0.865
CYP3A4-inhibitor:  0.8
CYP3A4-substrate:  0.473

ADMET: Excretion

Clearance (CL):  5.087
Half-life (T1/2):  0.354

ADMET: Toxicity

hERG Blockers:  0.015
Human Hepatotoxicity (H-HT):  0.384
Drug-inuced Liver Injury (DILI):  0.014
AMES Toxicity:  0.001
Rat Oral Acute Toxicity:  0.024
Maximum Recommended Daily Dose:  0.77
Skin Sensitization:  0.126
Carcinogencity:  0.011
Eye Corrosion:  0.218
Eye Irritation:  0.499
Respiratory Toxicity:  0.937

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Similar NPs/Drugs  

  Natural Product: NPC201459

Natural Product ID:  NPC201459
Common Name*:   Betulone
IUPAC Name:   (1R,3aS,5aR,5bR,7aR,11aR,11bR,13aR,13bR)-3a-(hydroxymethyl)-5a,5b,8,8,11a-pentamethyl-1-prop-1-en-2-yl-2,3,4,5,6,7,7a,10,11,11b,12,13,13a,13b-tetradecahydro-1H-cyclopenta[a]chrysen-9-one
Synonyms:   Betulone
Standard InCHIKey:  JYDNKGUBLIKNAM-CNRMHUMKSA-N
Standard InCHI:  InChI=1S/C30H48O2/c1-19(2)20-10-15-30(18-31)17-16-28(6)21(25(20)30)8-9-23-27(5)13-12-24(32)26(3,4)22(27)11-14-29(23,28)7/h20-23,25,31H,1,8-18H2,2-7H3/t20-,21+,22-,23+,25+,27-,28+,29+,30+/m0/s1
SMILES:  C=C(C)[C@@H]1CC[C@@]2(CC[C@]3(C)[C@H](CC[C@@H]4[C@@]5(C)CCC(=O)C(C)(C)[C@@H]5CC[C@@]34C)[C@@H]12)CO
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL469284
PubChem CID:   10411004
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000012] Lipids and lipid-like molecules
      • [CHEMONTID:0000259] Prenol lipids
        • [CHEMONTID:0001553] Triterpenoids

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO24176 Streptomyces fradiae Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[10757717]
NPO1333 Maytenus chiapensis Species Celastraceae Eukaryota n.a. n.a. n.a. PMID[12713421]
NPO2353 Bituminaria bituminosa Species Fabaceae Eukaryota n.a. aerial part n.a. PMID[12943781]
NPO7484 Salacia chinensis Species Celastraceae Eukaryota n.a. n.a. n.a. PMID[12951446]
NPO7484 Salacia chinensis Species Celastraceae Eukaryota stems Thailand n.a. PMID[14510595]
NPO1333 Maytenus chiapensis Species Celastraceae Eukaryota n.a. leaf n.a. PMID[14738378]
NPO1333 Maytenus chiapensis Species Celastraceae Eukaryota n.a. n.a. n.a. PMID[14738378]
NPO14555 Porella swartziana Species Porellaceae Eukaryota n.a. Argentine n.a. PMID[14738381]
NPO14555 Porella swartziana Species Porellaceae Eukaryota n.a. n.a. n.a. PMID[14738381]
NPO22471 Maytenus cuzcoina Species Celastraceae Eukaryota root bark;leaves Huayllabamba-Urquillos, Province of Urabamba, Cusco (Peru); Parque Nacional El Imposible, El Salvador n.a. PMID[16038541]
NPO1333 Maytenus chiapensis Species Celastraceae Eukaryota root bark;leaves Huayllabamba-Urquillos, Province of Urabamba, Cusco (Peru); Parque Nacional El Imposible, El Salvador n.a. PMID[16038541]
NPO31410 Cupania cinerea Species Sapindaceae Eukaryota n.a. bark n.a. PMID[21438586]
NPO12977 Solenopsis invicta Species Formicidae Eukaryota n.a. n.a. n.a. PMID[21905650]
NPO33010 euonymus carnosus Species Celastraceae Eukaryota Plant n.a. n.a. PMID[24467317]
NPO23289 Heracleum sphondylium Species Apiaceae Eukaryota n.a. n.a. n.a. PMID[24697288]
NPO22471 Maytenus cuzcoina Species Celastraceae Eukaryota root bark Urubamba, Cusco, Peru n.a. PMID[25927586]
NPO40286 Phoradendron vernicosum Species Viscaceae Eukaryota Aerial Parts n.a. n.a. PMID[29120172]
NPO14826 Streptomyces mobaraensis Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[32998509]
NPO9420 Aspergillus arenarius Species Aspergillaceae Eukaryota sclerotia n.a. n.a. PMID[9599285]
NPO15510 Kummerowia striata Species Fabaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO16847 Consolida ajacis Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO5728 Gerbera piloselloides Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO12416 Quercus mongolica Species Fagaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO15961 Sida cordifolia Species Malvaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO23289 Heracleum sphondylium Species Apiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO12450 Cneorum pulverulentum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO15961 Sida cordifolia Species Malvaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO16847 Consolida ajacis Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO23289 Heracleum sphondylium Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO12416 Quercus mongolica Species Fagaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO5728 Gerbera piloselloides Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO14869 Ormosia panamensis Species Limoniidae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO15510 Kummerowia striata Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO5728 Gerbera piloselloides Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO12416 Quercus mongolica Species Fagaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO16847 Consolida ajacis Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO15858 Phoebe formosana Species Lauraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15510 Kummerowia striata Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12450 Cneorum pulverulentum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5078 Turraeanthus mannii Species Meliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15015 Meconopsis napaulensis Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16428 Millettia conraui Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12680 Perityle vaseyi Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15961 Sida cordifolia Species Malvaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12555 Aspergillus quadrilineatus Species Aspergillaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13375 Palafoxia rosea Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12416 Quercus mongolica Species Fagaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24176 Streptomyces fradiae Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO23289 Heracleum sphondylium Species Apiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24732 Cereus weberi Species Sagartiidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15393 Eucalyptus flocktoniae Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16847 Consolida ajacis Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15138 Rheum webbianum Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26017 Dalbergia stipulacea Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4267 Ceratocystis clavigera Species Ceratocystidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14218 Spodoptera littoralis Species 0ctuidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4935 Dinemasporium strigosum Species Chaetosphaeriaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12977 Solenopsis invicta Species Formicidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16516 Centaurea seridis Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16758 Satureja cuneifolia Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15755 Thymbra spicata Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14555 Porella swartziana Species Porellaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13548 Chrozophora obliqua Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5269 Coleus garckeanus Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11194 Bombus hortorum Species Apidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8499 Osmerus mordax Species Osmeridae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7484 Salacia chinensis Species Celastraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23989 Cyclamen neapolitanum Species Primulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5552 Solanum sisymbriifolium Species Solanaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22471 Maytenus cuzcoina Species Celastraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13859 Senecio flavus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16175 Trichia floriformis Species Trichiidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14034 Salvia coulteri Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11881 Adenopeltis colliguaya Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13230 Pedicularis condensata Species Orobanchaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5728 Gerbera piloselloides Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14869 Ormosia panamensis Species Limoniidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11599 Elaeagnus commutata Species Elaeagnaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13710 Lyophyllum shimeji Species Lyophyllaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2353 Bituminaria bituminosa Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9420 Aspergillus arenarius Species Aspergillaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3391 Jungermannia obovata Species Jungermanniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16678 Flindersia brayleyana Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1333 Maytenus chiapensis Species Celastraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15272 Mascarenhasia arborescens Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9780 Merremia umbellata Species Convolvulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14826 Streptomyces mobaraensis Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT319 Cell Line B16 Mus musculus ED50 = 0.19 uM PMID[456543]
NPT319 Cell Line B16 Mus musculus IC50 = 29300.0 nM PMID[456543]
NPT165 Cell Line HeLa Homo sapiens IC50 > 10.0 ug.mL-1 PMID[456544]
NPT1171 Cell Line HEp-2 Homo sapiens IC50 > 10.0 ug.mL-1 PMID[456544]
NPT189 Cell Line Vero Chlorocebus aethiops IC50 > 10.0 ug.mL-1 PMID[456544]
NPT839 Cell Line L6 Rattus norvegicus IC50 = 22200.0 nM PMID[456545]
NPT179 Cell Line A2780 Homo sapiens IC50 > 10000.0 nM PMID[456546]
NPT81 Cell Line A549 Homo sapiens IC50 > 10000.0 nM PMID[456546]
NPT460 Cell Line MT2 Homo sapiens CC50 > 100000.0 nM PMID[456547]
NPT2245 Cell Line SiHa Homo sapiens CC50 = 197400.0 nM PMID[456549]
NPT165 Cell Line HeLa Homo sapiens CC50 = 135700.0 nM PMID[456549]
NPT83 Cell Line MCF7 Homo sapiens CC50 > 500000.0 nM PMID[456549]
NPT82 Cell Line MDA-MB-231 Homo sapiens CC50 = 135800.0 nM PMID[456549]
NPT90 Cell Line DU-145 Homo sapiens CC50 = 102400.0 nM PMID[456549]
NPT91 Cell Line KB Homo sapiens CC50 > 500000.0 nM PMID[456549]
NPT1171 Cell Line HEp-2 Homo sapiens CC50 > 500000.0 nM PMID[456549]
NPT189 Cell Line Vero Chlorocebus aethiops CC50 > 500000.0 nM PMID[456549]
NPT71 Cell Line HEK293 Homo sapiens CC50 > 500000.0 nM PMID[456549]
NPT165 Cell Line HeLa Homo sapiens IC50 > 500000.0 nM PMID[456549]
NPT2245 Cell Line SiHa Homo sapiens IC50 > 500000.0 nM PMID[456549]
NPT83 Cell Line MCF7 Homo sapiens IC50 > 500000.0 nM PMID[456549]
NPT82 Cell Line MDA-MB-231 Homo sapiens IC50 > 500000.0 nM PMID[456549]
NPT90 Cell Line DU-145 Homo sapiens IC50 > 500000.0 nM PMID[456549]
NPT91 Cell Line KB Homo sapiens IC50 > 500000.0 nM PMID[456549]
NPT1171 Cell Line HEp-2 Homo sapiens IC50 > 500000.0 nM PMID[456549]
NPT189 Cell Line Vero Chlorocebus aethiops IC50 > 500000.0 nM PMID[456549]
NPT71 Cell Line HEK293 Homo sapiens IC50 > 500000.0 nM PMID[456549]
NPT485 Organism Plasmodium falciparum (isolate K1 / Thailand) Plasmodium falciparum K1 IC50 = 3000.0 nM PMID[456545]
NPT844 Organism Trypanosoma brucei rhodesiense Trypanosoma brucei rhodesiense IC50 = 18900.0 nM PMID[456545]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. IC50 > 10000.0 nM PMID[456546]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 Inhibition > 50.0 % PMID[456547]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 IC50 = 4100.0 nM PMID[456547]
NPT2 Others Unspecified Ratio CC50/IC50 > 24.5 n.a. PMID[456547]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. IC50 = 13250.0 nM PMID[456548]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. IC50 = 34030.0 nM PMID[456548]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. IC50 = 22480.0 nM PMID[456548]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. IC50 = 18220.0 nM PMID[456548]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. IC50 = 32940.0 nM PMID[456548]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC201459 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9733 High Similarity NPC103754
0.9733 High Similarity NPC474484
0.9481 High Similarity NPC475726
0.9481 High Similarity NPC175410
0.9481 High Similarity NPC472743
0.9359 High Similarity NPC474482
0.9359 High Similarity NPC474233
0.9359 High Similarity NPC475745
0.9241 High Similarity NPC292553
0.9241 High Similarity NPC201655
0.9211 High Similarity NPC192744
0.92 High Similarity NPC106078
0.9125 High Similarity NPC472738
0.9114 High Similarity NPC74595
0.9114 High Similarity NPC264665
0.9103 High Similarity NPC145143
0.9103 High Similarity NPC477858
0.9012 High Similarity NPC57469
0.9012 High Similarity NPC4643
0.9 High Similarity NPC264317
0.9 High Similarity NPC294438
0.8947 High Similarity NPC68828
0.8902 High Similarity NPC472739
0.8902 High Similarity NPC474719
0.8889 High Similarity NPC2783
0.8889 High Similarity NPC269396
0.8889 High Similarity NPC98236
0.8889 High Similarity NPC12774
0.8846 High Similarity NPC164999
0.8831 High Similarity NPC63020
0.878 High Similarity NPC93778
0.878 High Similarity NPC269360
0.878 High Similarity NPC264005
0.878 High Similarity NPC33768
0.8765 High Similarity NPC76518
0.875 High Similarity NPC245866
0.875 High Similarity NPC472740
0.8734 High Similarity NPC3915
0.8718 High Similarity NPC215843
0.8701 High Similarity NPC66105
0.8675 High Similarity NPC471900
0.8675 High Similarity NPC16377
0.8659 High Similarity NPC70661
0.8642 High Similarity NPC214043
0.8642 High Similarity NPC85774
0.8642 High Similarity NPC82902
0.8642 High Similarity NPC221758
0.8642 High Similarity NPC59453
0.8625 High Similarity NPC310989
0.8625 High Similarity NPC46881
0.8625 High Similarity NPC110780
0.8571 High Similarity NPC246445
0.8571 High Similarity NPC57954
0.8571 High Similarity NPC220498
0.8571 High Similarity NPC213832
0.8537 High Similarity NPC474218
0.8537 High Similarity NPC469948
0.8537 High Similarity NPC471224
0.8519 High Similarity NPC471036
0.8519 High Similarity NPC118800
0.8519 High Similarity NPC291320
0.8519 High Similarity NPC472498
0.85 High Similarity NPC328264
0.8488 Intermediate Similarity NPC244356
0.8488 Intermediate Similarity NPC224060
0.8471 Intermediate Similarity NPC169933
0.8462 Intermediate Similarity NPC471035
0.8462 Intermediate Similarity NPC149249
0.8462 Intermediate Similarity NPC212661
0.8452 Intermediate Similarity NPC193360
0.8452 Intermediate Similarity NPC4309
0.8442 Intermediate Similarity NPC231256
0.8442 Intermediate Similarity NPC240235
0.8442 Intermediate Similarity NPC178383
0.8442 Intermediate Similarity NPC195155
0.8442 Intermediate Similarity NPC212879
0.8442 Intermediate Similarity NPC104387
0.8442 Intermediate Similarity NPC174964
0.8442 Intermediate Similarity NPC97534
0.8434 Intermediate Similarity NPC51014
0.8434 Intermediate Similarity NPC31564
0.8434 Intermediate Similarity NPC474732
0.8434 Intermediate Similarity NPC474778
0.8434 Intermediate Similarity NPC145879
0.8434 Intermediate Similarity NPC474733
0.8434 Intermediate Similarity NPC80590
0.8434 Intermediate Similarity NPC469994
0.8421 Intermediate Similarity NPC244708
0.8421 Intermediate Similarity NPC330659
0.8421 Intermediate Similarity NPC36310
0.8421 Intermediate Similarity NPC161187
0.8415 Intermediate Similarity NPC146683
0.8415 Intermediate Similarity NPC473246
0.8415 Intermediate Similarity NPC237712
0.8415 Intermediate Similarity NPC180834
0.8415 Intermediate Similarity NPC263974
0.8395 Intermediate Similarity NPC170985
0.8395 Intermediate Similarity NPC151519
0.8378 Intermediate Similarity NPC473225
0.8375 Intermediate Similarity NPC472478
0.8372 Intermediate Similarity NPC272746
0.8372 Intermediate Similarity NPC475416
0.8356 Intermediate Similarity NPC43300
0.8354 Intermediate Similarity NPC82635
0.8353 Intermediate Similarity NPC247312
0.8353 Intermediate Similarity NPC271974
0.8353 Intermediate Similarity NPC122116
0.8333 Intermediate Similarity NPC78067
0.8333 Intermediate Similarity NPC20466
0.8333 Intermediate Similarity NPC317590
0.8333 Intermediate Similarity NPC5767
0.8333 Intermediate Similarity NPC14112
0.8333 Intermediate Similarity NPC86305
0.8333 Intermediate Similarity NPC475742
0.8333 Intermediate Similarity NPC58063
0.8333 Intermediate Similarity NPC96496
0.8333 Intermediate Similarity NPC90652
0.8333 Intermediate Similarity NPC134197
0.8333 Intermediate Similarity NPC278091
0.8333 Intermediate Similarity NPC93662
0.8333 Intermediate Similarity NPC475740
0.8313 Intermediate Similarity NPC102292
0.8313 Intermediate Similarity NPC190704
0.8313 Intermediate Similarity NPC474083
0.8313 Intermediate Similarity NPC471034
0.8313 Intermediate Similarity NPC274724
0.8313 Intermediate Similarity NPC133954
0.8312 Intermediate Similarity NPC25511
0.8312 Intermediate Similarity NPC62657
0.8312 Intermediate Similarity NPC192638
0.8312 Intermediate Similarity NPC159497
0.8293 Intermediate Similarity NPC471037
0.8289 Intermediate Similarity NPC156277
0.8289 Intermediate Similarity NPC58057
0.8289 Intermediate Similarity NPC151018
0.8289 Intermediate Similarity NPC320549
0.8276 Intermediate Similarity NPC473690
0.8276 Intermediate Similarity NPC291373
0.8276 Intermediate Similarity NPC471902
0.8276 Intermediate Similarity NPC287118
0.8272 Intermediate Similarity NPC164210
0.8272 Intermediate Similarity NPC147066
0.8267 Intermediate Similarity NPC475952
0.8256 Intermediate Similarity NPC85173
0.8256 Intermediate Similarity NPC126993
0.8256 Intermediate Similarity NPC46758
0.825 Intermediate Similarity NPC472490
0.825 Intermediate Similarity NPC471475
0.825 Intermediate Similarity NPC476812
0.8235 Intermediate Similarity NPC183374
0.8235 Intermediate Similarity NPC211162
0.8235 Intermediate Similarity NPC328313
0.8235 Intermediate Similarity NPC146937
0.8235 Intermediate Similarity NPC470417
0.8228 Intermediate Similarity NPC472746
0.8228 Intermediate Similarity NPC248830
0.8228 Intermediate Similarity NPC476811
0.8228 Intermediate Similarity NPC119355
0.8228 Intermediate Similarity NPC221420
0.8228 Intermediate Similarity NPC23884
0.8228 Intermediate Similarity NPC202540
0.8228 Intermediate Similarity NPC212241
0.8219 Intermediate Similarity NPC27243
0.8219 Intermediate Similarity NPC476737
0.8214 Intermediate Similarity NPC213412
0.8214 Intermediate Similarity NPC473168
0.8214 Intermediate Similarity NPC72133
0.8214 Intermediate Similarity NPC475862
0.8214 Intermediate Similarity NPC155011
0.8214 Intermediate Similarity NPC74363
0.8214 Intermediate Similarity NPC471737
0.8193 Intermediate Similarity NPC58841
0.8193 Intermediate Similarity NPC161423
0.8193 Intermediate Similarity NPC227064
0.8193 Intermediate Similarity NPC475509
0.8193 Intermediate Similarity NPC321187
0.8193 Intermediate Similarity NPC329043
0.8193 Intermediate Similarity NPC473157
0.8182 Intermediate Similarity NPC277399
0.8182 Intermediate Similarity NPC279241
0.8182 Intermediate Similarity NPC232112
0.8182 Intermediate Similarity NPC310766
0.8182 Intermediate Similarity NPC303863
0.8161 Intermediate Similarity NPC160506
0.8161 Intermediate Similarity NPC471901
0.8158 Intermediate Similarity NPC91369
0.8158 Intermediate Similarity NPC108131
0.8148 Intermediate Similarity NPC2482
0.814 Intermediate Similarity NPC474245
0.814 Intermediate Similarity NPC26959
0.814 Intermediate Similarity NPC477943
0.814 Intermediate Similarity NPC2983
0.814 Intermediate Similarity NPC24772
0.814 Intermediate Similarity NPC32830
0.814 Intermediate Similarity NPC116146
0.814 Intermediate Similarity NPC473999
0.814 Intermediate Similarity NPC268406
0.814 Intermediate Similarity NPC309603
0.814 Intermediate Similarity NPC1015
0.814 Intermediate Similarity NPC186688

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC201459 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.9 High Similarity NPD7520 Clinical (unspecified phase)
0.8987 High Similarity NPD4788 Approved
0.8642 High Similarity NPD4786 Approved
0.84 Intermediate Similarity NPD4789 Approved
0.8395 Intermediate Similarity NPD3667 Approved
0.8289 Intermediate Similarity NPD4808 Clinical (unspecified phase)
0.8289 Intermediate Similarity NPD4809 Clinical (unspecified phase)
0.8219 Intermediate Similarity NPD3171 Clinical (unspecified phase)
0.8193 Intermediate Similarity NPD3665 Phase 1
0.8193 Intermediate Similarity NPD3666 Approved
0.8193 Intermediate Similarity NPD3133 Approved
0.8161 Intermediate Similarity NPD8035 Phase 2
0.8161 Intermediate Similarity NPD8034 Phase 2
0.8158 Intermediate Similarity NPD4245 Approved
0.8158 Intermediate Similarity NPD4244 Approved
0.814 Intermediate Similarity NPD5328 Approved
0.8026 Intermediate Similarity NPD3699 Clinical (unspecified phase)
0.8026 Intermediate Similarity NPD3700 Clinical (unspecified phase)
0.8026 Intermediate Similarity NPD3698 Phase 2
0.8 Intermediate Similarity NPD3618 Phase 1
0.7955 Intermediate Similarity NPD6079 Approved
0.7952 Intermediate Similarity NPD4223 Phase 3
0.7952 Intermediate Similarity NPD4221 Approved
0.7931 Intermediate Similarity NPD4753 Phase 2
0.7895 Intermediate Similarity NPD5360 Phase 3
0.7895 Intermediate Similarity NPD5361 Clinical (unspecified phase)
0.7882 Intermediate Similarity NPD5329 Approved
0.7848 Intermediate Similarity NPD6113 Clinical (unspecified phase)
0.7791 Intermediate Similarity NPD5279 Phase 3
0.7765 Intermediate Similarity NPD4197 Approved
0.7753 Intermediate Similarity NPD7515 Phase 2
0.7683 Intermediate Similarity NPD3617 Approved
0.7667 Intermediate Similarity NPD4202 Approved
0.7667 Intermediate Similarity NPD6399 Phase 3
0.7654 Intermediate Similarity NPD6117 Approved
0.7632 Intermediate Similarity NPD4224 Phase 2
0.7614 Intermediate Similarity NPD7513 Clinical (unspecified phase)
0.7595 Intermediate Similarity NPD6081 Approved
0.7586 Intermediate Similarity NPD4689 Approved
0.7586 Intermediate Similarity NPD5205 Approved
0.7586 Intermediate Similarity NPD4693 Phase 3
0.7586 Intermediate Similarity NPD4690 Approved
0.7586 Intermediate Similarity NPD4138 Approved
0.7586 Intermediate Similarity NPD4688 Approved
0.7561 Intermediate Similarity NPD6116 Phase 1
0.7558 Intermediate Similarity NPD3668 Phase 3
0.7531 Intermediate Similarity NPD6942 Approved
0.7531 Intermediate Similarity NPD7339 Approved
0.7531 Intermediate Similarity NPD3703 Phase 2
0.7527 Intermediate Similarity NPD6084 Phase 2
0.7527 Intermediate Similarity NPD6083 Phase 2
0.75 Intermediate Similarity NPD4629 Approved
0.75 Intermediate Similarity NPD7525 Registered
0.75 Intermediate Similarity NPD5210 Approved
0.747 Intermediate Similarity NPD6115 Approved
0.747 Intermediate Similarity NPD6697 Approved
0.747 Intermediate Similarity NPD6118 Approved
0.747 Intermediate Similarity NPD6114 Approved
0.7419 Intermediate Similarity NPD5222 Approved
0.7419 Intermediate Similarity NPD5221 Approved
0.7419 Intermediate Similarity NPD5220 Clinical (unspecified phase)
0.7419 Intermediate Similarity NPD4697 Phase 3
0.7416 Intermediate Similarity NPD6672 Approved
0.7416 Intermediate Similarity NPD5737 Approved
0.7412 Intermediate Similarity NPD4692 Approved
0.7412 Intermediate Similarity NPD4139 Approved
0.7391 Intermediate Similarity NPD7748 Approved
0.7386 Intermediate Similarity NPD5690 Phase 2
0.7386 Intermediate Similarity NPD6409 Approved
0.7386 Intermediate Similarity NPD6684 Approved
0.7386 Intermediate Similarity NPD7334 Approved
0.7386 Intermediate Similarity NPD7521 Approved
0.7386 Intermediate Similarity NPD7146 Approved
0.7386 Intermediate Similarity NPD4694 Approved
0.7386 Intermediate Similarity NPD5280 Approved
0.7386 Intermediate Similarity NPD5330 Approved
0.7375 Intermediate Similarity NPD4758 Discontinued
0.734 Intermediate Similarity NPD5173 Approved
0.734 Intermediate Similarity NPD4755 Approved
0.7262 Intermediate Similarity NPD3671 Phase 1
0.725 Intermediate Similarity NPD4747 Approved
0.7229 Intermediate Similarity NPD3701 Clinical (unspecified phase)
0.7222 Intermediate Similarity NPD6903 Approved
0.7195 Intermediate Similarity NPD6924 Approved
0.7195 Intermediate Similarity NPD6926 Approved
0.7191 Intermediate Similarity NPD6098 Approved
0.7191 Intermediate Similarity NPD3574 Clinical (unspecified phase)
0.7188 Intermediate Similarity NPD5286 Approved
0.7188 Intermediate Similarity NPD5285 Approved
0.7188 Intermediate Similarity NPD4700 Approved
0.7188 Intermediate Similarity NPD4696 Approved
0.7176 Intermediate Similarity NPD7645 Phase 2
0.7176 Intermediate Similarity NPD4195 Approved
0.716 Intermediate Similarity NPD4243 Approved
0.716 Intermediate Similarity NPD5777 Approved
0.7158 Intermediate Similarity NPD7902 Approved
0.7128 Intermediate Similarity NPD5695 Phase 3
0.7125 Intermediate Similarity NPD4137 Phase 3
0.7113 Intermediate Similarity NPD5223 Approved
0.7108 Intermediate Similarity NPD3702 Approved
0.7093 Intermediate Similarity NPD4695 Discontinued
0.7083 Intermediate Similarity NPD5696 Approved
0.7059 Intermediate Similarity NPD5364 Discontinued
0.7041 Intermediate Similarity NPD4633 Approved
0.7041 Intermediate Similarity NPD5226 Approved
0.7041 Intermediate Similarity NPD5224 Approved
0.7041 Intermediate Similarity NPD5211 Phase 2
0.7041 Intermediate Similarity NPD5225 Approved
0.7037 Intermediate Similarity NPD4691 Approved
0.7024 Intermediate Similarity NPD6933 Approved
0.7 Intermediate Similarity NPD6402 Approved
0.7 Intermediate Similarity NPD4519 Discontinued
0.7 Intermediate Similarity NPD6675 Approved
0.7 Intermediate Similarity NPD5739 Approved
0.7 Intermediate Similarity NPD4623 Approved
0.7 Intermediate Similarity NPD3621 Clinical (unspecified phase)
0.7 Intermediate Similarity NPD7128 Approved
0.6989 Remote Similarity NPD5284 Approved
0.6989 Remote Similarity NPD5281 Approved
0.6988 Remote Similarity NPD5733 Approved
0.6988 Remote Similarity NPD4785 Approved
0.6988 Remote Similarity NPD4784 Approved
0.697 Remote Similarity NPD5175 Approved
0.697 Remote Similarity NPD5174 Approved
0.697 Remote Similarity NPD4754 Approved
0.6957 Remote Similarity NPD6904 Approved
0.6957 Remote Similarity NPD6673 Approved
0.6957 Remote Similarity NPD7285 Clinical (unspecified phase)
0.6957 Remote Similarity NPD6080 Approved
0.6931 Remote Similarity NPD6412 Phase 2
0.6914 Remote Similarity NPD6923 Approved
0.6914 Remote Similarity NPD6922 Approved
0.6907 Remote Similarity NPD7638 Approved
0.69 Remote Similarity NPD5141 Approved
0.6882 Remote Similarity NPD4096 Approved
0.6863 Remote Similarity NPD7320 Approved
0.6863 Remote Similarity NPD6899 Approved
0.6863 Remote Similarity NPD6881 Approved
0.686 Remote Similarity NPD5784 Clinical (unspecified phase)
0.6848 Remote Similarity NPD5208 Approved
0.6842 Remote Similarity NPD7900 Approved
0.6842 Remote Similarity NPD7901 Clinical (unspecified phase)
0.6837 Remote Similarity NPD7640 Approved
0.6837 Remote Similarity NPD7639 Approved
0.6832 Remote Similarity NPD4768 Approved
0.6832 Remote Similarity NPD4767 Approved
0.6829 Remote Similarity NPD7143 Approved
0.6829 Remote Similarity NPD7144 Approved
0.6796 Remote Similarity NPD6373 Approved
0.6796 Remote Similarity NPD6372 Approved
0.6786 Remote Similarity NPD4687 Approved
0.6786 Remote Similarity NPD4058 Approved
0.6782 Remote Similarity NPD6929 Approved
0.6771 Remote Similarity NPD6356 Clinical (unspecified phase)
0.6765 Remote Similarity NPD5701 Approved
0.6765 Remote Similarity NPD5697 Approved
0.6747 Remote Similarity NPD5276 Approved
0.6747 Remote Similarity NPD7152 Approved
0.6747 Remote Similarity NPD7151 Approved
0.6747 Remote Similarity NPD7150 Approved
0.6737 Remote Similarity NPD5133 Approved
0.6731 Remote Similarity NPD6883 Approved
0.6731 Remote Similarity NPD7102 Approved
0.6731 Remote Similarity NPD7290 Approved
0.6707 Remote Similarity NPD4267 Clinical (unspecified phase)
0.6706 Remote Similarity NPD5275 Approved
0.6706 Remote Similarity NPD4190 Phase 3
0.6705 Remote Similarity NPD6930 Phase 2
0.6705 Remote Similarity NPD6931 Approved
0.6699 Remote Similarity NPD5168 Approved
0.6699 Remote Similarity NPD4730 Approved
0.6699 Remote Similarity NPD6011 Approved
0.6699 Remote Similarity NPD4729 Approved
0.6699 Remote Similarity NPD5128 Approved
0.6667 Remote Similarity NPD6401 Clinical (unspecified phase)
0.6667 Remote Similarity NPD6869 Approved
0.6667 Remote Similarity NPD4518 Approved
0.6667 Remote Similarity NPD6649 Approved
0.6667 Remote Similarity NPD6847 Approved
0.6667 Remote Similarity NPD8130 Phase 1
0.6667 Remote Similarity NPD6650 Approved
0.6667 Remote Similarity NPD6617 Approved
0.6635 Remote Similarity NPD6013 Approved
0.6635 Remote Similarity NPD6014 Approved
0.6635 Remote Similarity NPD6012 Approved
0.6632 Remote Similarity NPD5693 Phase 1
0.6632 Remote Similarity NPD6050 Approved
0.6627 Remote Similarity NPD4787 Phase 1
0.6604 Remote Similarity NPD6882 Approved
0.6604 Remote Similarity NPD8297 Approved
0.6571 Remote Similarity NPD4634 Approved
0.6571 Remote Similarity NPD5250 Approved
0.6571 Remote Similarity NPD5169 Approved
0.6571 Remote Similarity NPD5248 Approved
0.6571 Remote Similarity NPD5251 Approved
0.6571 Remote Similarity NPD5247 Approved
0.6571 Remote Similarity NPD5134 Clinical (unspecified phase)
0.6571 Remote Similarity NPD5249 Phase 3
0.6571 Remote Similarity NPD5135 Approved
0.6559 Remote Similarity NPD4751 Clinical (unspecified phase)

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data