Structure

Physi-Chem Properties

Molecular Weight:  874.51
Volume:  888.749
LogP:  5.247
LogD:  3.976
LogS:  -5.493
# Rotatable Bonds:  8
TPSA:  170.06
# H-Bond Aceptor:  14
# H-Bond Donor:  3
# Rings:  7
# Heavy Atoms:  14

MedChem Properties

QED Drug-Likeness Score:  0.204
Synthetic Accessibility Score:  7.986
Fsp3:  0.812
Lipinski Rule-of-5:  Rejected
Pfizer Rule:  Accepted
GSK Rule:  Rejected
BMS Rule:  0
Golden Triangle Rule:  Rejected
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -4.873
MDCK Permeability:  0.00022416931460611522
Pgp-inhibitor:  0.999
Pgp-substrate:  1.0
Human Intestinal Absorption (HIA):  0.024
20% Bioavailability (F20%):  0.002
30% Bioavailability (F30%):  0.095

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.002
Plasma Protein Binding (PPB):  94.56232452392578%
Volume Distribution (VD):  0.954
Pgp-substrate:  3.717945098876953%

ADMET: Metabolism

CYP1A2-inhibitor:  0.0
CYP1A2-substrate:  0.786
CYP2C19-inhibitor:  0.014
CYP2C19-substrate:  0.872
CYP2C9-inhibitor:  0.016
CYP2C9-substrate:  0.002
CYP2D6-inhibitor:  0.003
CYP2D6-substrate:  0.098
CYP3A4-inhibitor:  0.727
CYP3A4-substrate:  0.894

ADMET: Excretion

Clearance (CL):  7.64
Half-life (T1/2):  0.008

ADMET: Toxicity

hERG Blockers:  0.886
Human Hepatotoxicity (H-HT):  0.815
Drug-inuced Liver Injury (DILI):  0.972
AMES Toxicity:  0.971
Rat Oral Acute Toxicity:  0.041
Maximum Recommended Daily Dose:  0.999
Skin Sensitization:  0.929
Carcinogencity:  0.203
Eye Corrosion:  0.003
Eye Irritation:  0.011
Respiratory Toxicity:  0.986

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  Natural Product: NPC183353

Natural Product ID:  NPC183353
Common Name*:   AZSNMRSAGSSBNP-XPNPUAGNSA-N
IUPAC Name:   n.a.
Synonyms:  
Standard InCHIKey:  AZSNMRSAGSSBNP-XPNPUAGNSA-N
Standard InCHI:  InChI=1S/C48H74O14/c1-11-25(2)43-28(5)17-18-47(62-43)23-34-20-33(61-47)16-15-27(4)42(26(3)13-12-14-32-24-55-45-40(49)29(6)19-35(46(51)58-34)48(32,45)52)59-39-22-37(54-10)44(31(8)57-39)60-38-21-36(53-9)41(50)30(7)56-38/h12-15,19,25-26,28,30-31,33-45,49-50,52H,11,16-18,20-24H2,1-10H3/b13-12+,27-15+,32-14+/t25-,26-,28-,30-,31-,33+,34-,35-,36-,37-,38-,39-,40+,41-,42-,43+,44-,45+,47+,48+/m0/s1
SMILES:  CO[C@H]1C[C@H](O[C@H]2[C@@H](C)/C=C/C=C/3CO[C@H]4[C@]3(O)[C@@H](C=C([C@H]4O)C)C(=O)O[C@H]3C[C@@H](C/C=C/2C)O[C@]2(C3)CC[C@@H]([C@H](O2)[C@H](CC)C)C)O[C@H]([C@@H]1O[C@H]1C[C@H](OC)[C@H]([C@@H](O1)C)O)C
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL263291
PubChem CID:   6321424
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000261] Phenylpropanoids and polyketides
      • [CHEMONTID:0000147] Macrolides and analogues
        • [CHEMONTID:0002902] Milbemycins

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO2303 Sinularia scabra Species Alcyoniidae Eukaryota n.a. n.a. n.a. PMID[12502336]
NPO16076 Penicillium chrysogenum Species Aspergillaceae Eukaryota n.a. n.a. n.a. PMID[1367520]
NPO2303 Sinularia scabra Species Alcyoniidae Eukaryota n.a. n.a. n.a. PMID[15620256]
NPO16076 Penicillium chrysogenum Species Aspergillaceae Eukaryota n.a. n.a. n.a. PMID[15974609]
NPO16076 Penicillium chrysogenum Species Aspergillaceae Eukaryota n.a. mycelium n.a. PMID[21381678]
NPO16076 Penicillium chrysogenum Species Aspergillaceae Eukaryota n.a. n.a. n.a. PMID[21667925]
NPO16076 Penicillium chrysogenum Species Aspergillaceae Eukaryota n.a. n.a. n.a. PMID[22118684]
NPO15848 Veratrum nigrum Species Melanthiaceae Eukaryota roots and rhizomes n.a. n.a. PMID[25835537]
NPO16076 Penicillium chrysogenum Species Aspergillaceae Eukaryota n.a. n.a. n.a. PMID[26692349]
NPO40350 Sparticola junci Species Sporormiaceae Eukaryota n.a. n.a. n.a. PMID[31599583]
NPO16076 Penicillium chrysogenum Species Aspergillaceae Eukaryota n.a. n.a. n.a. PMID[33089690]
NPO16076 Penicillium chrysogenum Species Aspergillaceae Eukaryota n.a. n.a. n.a. PMID[8626236]
NPO14368 Stephania sinica Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO11138 Veronicastrum sibiricum Species Plantaginaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO350 Piper cenocladum Species Piperaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO15848 Veratrum nigrum Species Melanthiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO350 Piper cenocladum Species Piperaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO14368 Stephania sinica Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO15848 Veratrum nigrum Species Melanthiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO11138 Veronicastrum sibiricum Species Plantaginaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO11138 Veronicastrum sibiricum Species Plantaginaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO15848 Veratrum nigrum Species Melanthiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO15848 Veratrum nigrum Species Melanthiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO15848 Veratrum nigrum Species Melanthiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13362 Scabiosa bipinnata Species Caprifoliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13532 Prorocentrum hoffmannianum Species Prorocentraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16671 Lysimachia vulgaris Species Primulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14185 Helianthopsis utcubambensis n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO16076 Penicillium chrysogenum Species Aspergillaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO350 Piper cenocladum Species Piperaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11138 Veronicastrum sibiricum Species Plantaginaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15499 Boletus radicans Species Boletaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5000 Cordyceps brongniartii Species Cordycipitaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10754 Zanthoxylum clava-herculis Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12115 Odontaster validus Species Odontasteridae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28362 Tacca paxiana Species Taccaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14993 Poecillastra laminaris Species Vulcanellidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14368 Stephania sinica Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2303 Sinularia scabra Species Alcyoniidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3282 Baeckea brevifolia Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT50 Individual Protein Tyrosyl-DNA phosphodiesterase 1 Homo sapiens Potency n.a. 8414.4 nM PMID[519976]
NPT50 Individual Protein Tyrosyl-DNA phosphodiesterase 1 Homo sapiens Potency n.a. 10593.1 nM PMID[519976]
NPT5536 Individual Protein Sarcoplasmic/endoplasmic reticulum calcium ATP-ase Oryctolagus cuniculus IC50 = 15000.0 nM PMID[519981]
NPT153 Individual Protein Androgen Receptor Homo sapiens Potency n.a. 30106.5 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 14125.4 nM PMID[519976]
NPT2 Others Unspecified Potency n.a. 6309.6 nM PMID[519976]
NPT20555 ORGANISM SARS-CoV-2 Severe acute respiratory syndrome coronavirus 2 Inhibition index = -0.1263 n.a. PMID[519977]
NPT20555 ORGANISM SARS-CoV-2 Severe acute respiratory syndrome coronavirus 2 Inhibition = 7.94 % PMID[519978]
NPT474 Organism Plasmodium berghei Plasmodium berghei IC50 = 1639.0 nM PMID[519979]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 519.6 nM PMID[519979]
NPT474 Organism Plasmodium berghei Plasmodium berghei IC50 = 2100.0 nM PMID[519979]
NPT21773 SINGLE PROTEIN Thiosulfate sulfurtransferase Homo sapiens IC50 > 100000.0 nM PMID[519980]
NPT2 Others Unspecified IC50 > 63000.0 nM PMID[519980]
NPT21772 PROTEIN COMPLEX GroEL/GroES Escherichia coli IC50 = 23000.0 nM PMID[519980]
NPT21772 PROTEIN COMPLEX GroEL/GroES Escherichia coli IC50 = 9500.0 nM PMID[519980]
NPT21774 PROTEIN COMPLEX HSP60/HSP10 Homo sapiens IC50 = 16000.0 nM PMID[519980]
NPT21775 SINGLE PROTEIN 60 kDa chaperonin Escherichia coli (strain K12) IC50 > 250000.0 nM PMID[519980]
NPT2 Others Unspecified Ratio IC50 = 1.0 n.a. PMID[519980]
NPT21772 PROTEIN COMPLEX GroEL/GroES Escherichia coli Inhibition = 88.0 % PMID[519980]
NPT21772 PROTEIN COMPLEX GroEL/GroES Escherichia coli Inhibition = 82.0 % PMID[519980]
NPT2 Others Unspecified IC50 = 15000.0 nM PMID[519981]
NPT530 Organism Caenorhabditis elegans Caenorhabditis elegans LD50 = 1.0 ug ml-1 PMID[519982]
NPT20556 SINGLE PROTEIN Replicase polyprotein 1ab Severe acute respiratory syndrome coronavirus 2 Inhibition = 17.25 % PMID[519983]
NPT20555 ORGANISM SARS-CoV-2 Severe acute respiratory syndrome coronavirus 2 Inhibition = 24.6 % PMID[519984]
NPT2 Others Unspecified Potency n.a. 13333.2 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 5308 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 6007 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 21313.8 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 2984.9 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 7497.8 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 21131.7 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 190 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 15089 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 7562.4 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 18995.9 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 4216.3 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 1678.5 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 53080.4 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency n.a. 3757.8 nM PubChem BioAssay data set

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC183353 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC469812
0.9821 High Similarity NPC170880
0.8509 High Similarity NPC315836
0.8509 High Similarity NPC313668
0.8487 Intermediate Similarity NPC122971
0.848 Intermediate Similarity NPC319719
0.848 Intermediate Similarity NPC196874
0.848 Intermediate Similarity NPC475177
0.848 Intermediate Similarity NPC473679
0.848 Intermediate Similarity NPC324933
0.848 Intermediate Similarity NPC233223
0.848 Intermediate Similarity NPC475444
0.848 Intermediate Similarity NPC183816
0.848 Intermediate Similarity NPC322904
0.8455 Intermediate Similarity NPC470780
0.84 Intermediate Similarity NPC311178
0.84 Intermediate Similarity NPC222951
0.84 Intermediate Similarity NPC300655
0.84 Intermediate Similarity NPC43589
0.8387 Intermediate Similarity NPC470475
0.8387 Intermediate Similarity NPC470476
0.8362 Intermediate Similarity NPC297945
0.8362 Intermediate Similarity NPC126897
0.8264 Intermediate Similarity NPC473130
0.824 Intermediate Similarity NPC472268
0.824 Intermediate Similarity NPC45606
0.824 Intermediate Similarity NPC112492
0.824 Intermediate Similarity NPC472269
0.824 Intermediate Similarity NPC472270
0.824 Intermediate Similarity NPC23020
0.824 Intermediate Similarity NPC220838
0.8211 Intermediate Similarity NPC41129
0.8203 Intermediate Similarity NPC477234
0.8197 Intermediate Similarity NPC476204
0.8197 Intermediate Similarity NPC170084
0.8182 Intermediate Similarity NPC207738
0.8175 Intermediate Similarity NPC477235
0.8151 Intermediate Similarity NPC181145
0.8145 Intermediate Similarity NPC470477
0.813 Intermediate Similarity NPC275343
0.8125 Intermediate Similarity NPC478151
0.8125 Intermediate Similarity NPC316915
0.8125 Intermediate Similarity NPC225791
0.8115 Intermediate Similarity NPC110385
0.8115 Intermediate Similarity NPC267694
0.8115 Intermediate Similarity NPC48692
0.8115 Intermediate Similarity NPC37860
0.8115 Intermediate Similarity NPC268184
0.8115 Intermediate Similarity NPC473645
0.8115 Intermediate Similarity NPC476150
0.8115 Intermediate Similarity NPC144644
0.8115 Intermediate Similarity NPC142151
0.8115 Intermediate Similarity NPC476127
0.8115 Intermediate Similarity NPC153673
0.811 Intermediate Similarity NPC476074
0.811 Intermediate Similarity NPC478065
0.811 Intermediate Similarity NPC475377
0.811 Intermediate Similarity NPC264566
0.811 Intermediate Similarity NPC172374
0.811 Intermediate Similarity NPC45346
0.811 Intermediate Similarity NPC475167
0.811 Intermediate Similarity NPC262796
0.811 Intermediate Similarity NPC134914
0.811 Intermediate Similarity NPC173435
0.811 Intermediate Similarity NPC478064
0.811 Intermediate Similarity NPC329993
0.811 Intermediate Similarity NPC301639
0.8099 Intermediate Similarity NPC276758
0.8099 Intermediate Similarity NPC18233
0.8099 Intermediate Similarity NPC232237
0.8099 Intermediate Similarity NPC105800
0.8095 Intermediate Similarity NPC245094
0.808 Intermediate Similarity NPC181066
0.808 Intermediate Similarity NPC297950
0.808 Intermediate Similarity NPC469947
0.808 Intermediate Similarity NPC470218
0.8077 Intermediate Similarity NPC477236
0.8077 Intermediate Similarity NPC251998
0.8067 Intermediate Similarity NPC75167
0.8067 Intermediate Similarity NPC311592
0.8065 Intermediate Similarity NPC235405
0.8065 Intermediate Similarity NPC30735
0.8065 Intermediate Similarity NPC281148
0.8049 Intermediate Similarity NPC51099
0.8049 Intermediate Similarity NPC470829
0.8049 Intermediate Similarity NPC473228
0.8049 Intermediate Similarity NPC275225
0.8049 Intermediate Similarity NPC75417
0.8049 Intermediate Similarity NPC293031
0.8049 Intermediate Similarity NPC68767
0.8047 Intermediate Similarity NPC473918
0.8047 Intermediate Similarity NPC30279
0.8047 Intermediate Similarity NPC46823
0.8047 Intermediate Similarity NPC312650
0.8047 Intermediate Similarity NPC231240
0.8047 Intermediate Similarity NPC478150
0.8047 Intermediate Similarity NPC71391
0.8047 Intermediate Similarity NPC478152
0.8047 Intermediate Similarity NPC178264
0.8047 Intermediate Similarity NPC476776
0.8047 Intermediate Similarity NPC478154
0.8047 Intermediate Similarity NPC277212
0.8047 Intermediate Similarity NPC478153
0.8047 Intermediate Similarity NPC192765
0.8033 Intermediate Similarity NPC25663
0.8033 Intermediate Similarity NPC51564
0.8033 Intermediate Similarity NPC477071
0.8033 Intermediate Similarity NPC135849
0.8031 Intermediate Similarity NPC470912
0.8031 Intermediate Similarity NPC476966
0.8031 Intermediate Similarity NPC47995
0.8031 Intermediate Similarity NPC265841
0.8017 Intermediate Similarity NPC475119
0.8017 Intermediate Similarity NPC68175
0.8017 Intermediate Similarity NPC473824
0.8016 Intermediate Similarity NPC470516
0.8015 Intermediate Similarity NPC596
0.8015 Intermediate Similarity NPC295885
0.8015 Intermediate Similarity NPC140045
0.8 Intermediate Similarity NPC23275
0.8 Intermediate Similarity NPC469869
0.8 Intermediate Similarity NPC110700
0.8 Intermediate Similarity NPC279915
0.8 Intermediate Similarity NPC262813
0.8 Intermediate Similarity NPC130229
0.8 Intermediate Similarity NPC318135
0.7984 Intermediate Similarity NPC475591
0.7984 Intermediate Similarity NPC107966
0.7984 Intermediate Similarity NPC235438
0.7984 Intermediate Similarity NPC10607
0.7984 Intermediate Similarity NPC187290
0.7984 Intermediate Similarity NPC80986
0.7984 Intermediate Similarity NPC40775
0.7984 Intermediate Similarity NPC4749
0.7984 Intermediate Similarity NPC236870
0.7984 Intermediate Similarity NPC476779
0.7984 Intermediate Similarity NPC249848
0.7984 Intermediate Similarity NPC21691
0.7983 Intermediate Similarity NPC174836
0.7969 Intermediate Similarity NPC476775
0.7969 Intermediate Similarity NPC478155
0.7969 Intermediate Similarity NPC173347
0.7969 Intermediate Similarity NPC476774
0.7969 Intermediate Similarity NPC271610
0.7969 Intermediate Similarity NPC477197
0.7969 Intermediate Similarity NPC476780
0.7969 Intermediate Similarity NPC25998
0.7967 Intermediate Similarity NPC476991
0.7966 Intermediate Similarity NPC119550
0.7966 Intermediate Similarity NPC83005
0.7955 Intermediate Similarity NPC477233
0.7955 Intermediate Similarity NPC477232
0.7953 Intermediate Similarity NPC477075
0.7953 Intermediate Similarity NPC329923
0.7953 Intermediate Similarity NPC477078
0.7953 Intermediate Similarity NPC475281
0.7951 Intermediate Similarity NPC471548
0.7951 Intermediate Similarity NPC36831
0.7951 Intermediate Similarity NPC475899
0.7949 Intermediate Similarity NPC193765
0.7939 Intermediate Similarity NPC471089
0.7939 Intermediate Similarity NPC141215
0.7939 Intermediate Similarity NPC190065
0.7934 Intermediate Similarity NPC26626
0.7934 Intermediate Similarity NPC291903
0.7934 Intermediate Similarity NPC75287
0.7934 Intermediate Similarity NPC51465
0.7934 Intermediate Similarity NPC58448
0.7934 Intermediate Similarity NPC161674
0.7934 Intermediate Similarity NPC471384
0.7934 Intermediate Similarity NPC305267
0.7934 Intermediate Similarity NPC476992
0.7934 Intermediate Similarity NPC160415
0.7934 Intermediate Similarity NPC37134
0.7934 Intermediate Similarity NPC473126
0.7934 Intermediate Similarity NPC288205
0.7931 Intermediate Similarity NPC476738
0.7931 Intermediate Similarity NPC476740
0.7923 Intermediate Similarity NPC476778
0.7923 Intermediate Similarity NPC476777
0.792 Intermediate Similarity NPC283417
0.792 Intermediate Similarity NPC258617
0.792 Intermediate Similarity NPC302543
0.792 Intermediate Similarity NPC478066
0.792 Intermediate Similarity NPC257211
0.792 Intermediate Similarity NPC200049
0.7917 Intermediate Similarity NPC138334
0.7917 Intermediate Similarity NPC189884
0.7917 Intermediate Similarity NPC204458
0.7917 Intermediate Similarity NPC47063
0.7913 Intermediate Similarity NPC309398
0.7903 Intermediate Similarity NPC171544
0.7903 Intermediate Similarity NPC64715
0.7903 Intermediate Similarity NPC86222
0.7903 Intermediate Similarity NPC104372
0.7903 Intermediate Similarity NPC159309
0.7903 Intermediate Similarity NPC223301
0.7903 Intermediate Similarity NPC62725
0.7903 Intermediate Similarity NPC222580
0.7903 Intermediate Similarity NPC187618

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC183353 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
1.0 High Similarity NPD8516 Approved
1.0 High Similarity NPD8517 Approved
1.0 High Similarity NPD8515 Approved
0.9821 High Similarity NPD8513 Phase 3
0.8607 High Similarity NPD8074 Phase 3
0.8362 Intermediate Similarity NPD8413 Clinical (unspecified phase)
0.7724 Intermediate Similarity NPD8295 Clinical (unspecified phase)
0.7658 Intermediate Similarity NPD7983 Approved
0.7638 Intermediate Similarity NPD8328 Phase 3
0.7565 Intermediate Similarity NPD8029 Clinical (unspecified phase)
0.7481 Intermediate Similarity NPD7319 Approved
0.748 Intermediate Similarity NPD8133 Approved
0.7424 Intermediate Similarity NPD8390 Approved
0.7424 Intermediate Similarity NPD8391 Approved
0.7424 Intermediate Similarity NPD8392 Approved
0.7385 Intermediate Similarity NPD7507 Approved
0.7385 Intermediate Similarity NPD8451 Approved
0.7328 Intermediate Similarity NPD8448 Approved
0.7308 Intermediate Similarity NPD8341 Approved
0.7308 Intermediate Similarity NPD8342 Approved
0.7308 Intermediate Similarity NPD8340 Approved
0.7308 Intermediate Similarity NPD8299 Approved
0.7295 Intermediate Similarity NPD8132 Clinical (unspecified phase)
0.7281 Intermediate Similarity NPD5779 Approved
0.7281 Intermediate Similarity NPD5778 Approved
0.7266 Intermediate Similarity NPD8294 Approved
0.7266 Intermediate Similarity NPD8377 Approved
0.7241 Intermediate Similarity NPD7839 Suspended
0.7231 Intermediate Similarity NPD7829 Approved
0.7231 Intermediate Similarity NPD7830 Approved
0.7213 Intermediate Similarity NPD6686 Approved
0.7209 Intermediate Similarity NPD8380 Approved
0.7209 Intermediate Similarity NPD8296 Approved
0.7209 Intermediate Similarity NPD7503 Approved
0.7209 Intermediate Similarity NPD8379 Approved
0.7209 Intermediate Similarity NPD8378 Approved
0.7209 Intermediate Similarity NPD8033 Approved
0.7209 Intermediate Similarity NPD8335 Approved
0.7143 Intermediate Similarity NPD7736 Approved
0.7077 Intermediate Similarity NPD8444 Approved
0.7031 Intermediate Similarity NPD7115 Discovery
0.7018 Intermediate Similarity NPD6101 Approved
0.7018 Intermediate Similarity NPD5764 Clinical (unspecified phase)
0.6957 Remote Similarity NPD46 Approved
0.6957 Remote Similarity NPD6698 Approved
0.694 Remote Similarity NPD8293 Discontinued
0.6935 Remote Similarity NPD5345 Clinical (unspecified phase)
0.6897 Remote Similarity NPD6411 Approved
0.6894 Remote Similarity NPD6370 Approved
0.6857 Remote Similarity NPD7966 Clinical (unspecified phase)
0.6855 Remote Similarity NPD7899 Clinical (unspecified phase)
0.6846 Remote Similarity NPD7328 Approved
0.6846 Remote Similarity NPD7327 Approved
0.6794 Remote Similarity NPD7516 Approved
0.6791 Remote Similarity NPD7492 Approved
0.6742 Remote Similarity NPD6054 Approved
0.6741 Remote Similarity NPD6616 Approved
0.672 Remote Similarity NPD6412 Phase 2
0.6716 Remote Similarity NPD7642 Approved
0.6694 Remote Similarity NPD4225 Approved
0.6691 Remote Similarity NPD7078 Approved
0.6667 Remote Similarity NPD7838 Discovery
0.6641 Remote Similarity NPD8137 Clinical (unspecified phase)
0.6617 Remote Similarity NPD6059 Approved
0.6617 Remote Similarity NPD6319 Approved
0.6591 Remote Similarity NPD7641 Discontinued
0.6567 Remote Similarity NPD6015 Approved
0.6567 Remote Similarity NPD6016 Approved
0.6562 Remote Similarity NPD6371 Approved
0.6519 Remote Similarity NPD5988 Approved
0.6484 Remote Similarity NPD4061 Clinical (unspecified phase)
0.6462 Remote Similarity NPD6882 Approved
0.6462 Remote Similarity NPD6053 Discontinued
0.6462 Remote Similarity NPD8297 Approved
0.6452 Remote Similarity NPD5344 Discontinued
0.6444 Remote Similarity NPD8274 Clinical (unspecified phase)
0.6444 Remote Similarity NPD8269 Approved
0.6444 Remote Similarity NPD6921 Approved
0.6444 Remote Similarity NPD8267 Approved
0.6444 Remote Similarity NPD8268 Approved
0.6444 Remote Similarity NPD8266 Approved
0.6434 Remote Similarity NPD8387 Clinical (unspecified phase)
0.6434 Remote Similarity NPD5955 Clinical (unspecified phase)
0.6429 Remote Similarity NPD8170 Clinical (unspecified phase)
0.6397 Remote Similarity NPD8080 Discontinued
0.6391 Remote Similarity NPD6009 Approved
0.6383 Remote Similarity NPD7260 Phase 2
0.6382 Remote Similarity NPD8389 Clinical (unspecified phase)
0.6377 Remote Similarity NPD8273 Phase 1
0.6371 Remote Similarity NPD7639 Approved
0.6371 Remote Similarity NPD6648 Approved
0.6371 Remote Similarity NPD7640 Approved
0.6364 Remote Similarity NPD8415 Approved
0.6333 Remote Similarity NPD7637 Suspended
0.6325 Remote Similarity NPD5786 Approved
0.6311 Remote Similarity NPD1698 Clinical (unspecified phase)
0.629 Remote Similarity NPD7638 Approved
0.6288 Remote Similarity NPD4632 Approved
0.626 Remote Similarity NPD6649 Approved
0.626 Remote Similarity NPD6650 Approved
0.6242 Remote Similarity NPD7799 Discontinued
0.6239 Remote Similarity NPD1733 Clinical (unspecified phase)
0.6231 Remote Similarity NPD6373 Approved
0.6231 Remote Similarity NPD6372 Approved
0.621 Remote Similarity NPD7902 Approved
0.6202 Remote Similarity NPD5954 Clinical (unspecified phase)
0.617 Remote Similarity NPD6033 Approved
0.6154 Remote Similarity NPD6881 Approved
0.6154 Remote Similarity NPD6899 Approved
0.6136 Remote Similarity NPD8130 Phase 1
0.6134 Remote Similarity NPD4250 Approved
0.6134 Remote Similarity NPD4251 Approved
0.6124 Remote Similarity NPD6008 Approved
0.6124 Remote Similarity NPD7128 Approved
0.6124 Remote Similarity NPD6402 Approved
0.6124 Remote Similarity NPD5739 Approved
0.6124 Remote Similarity NPD6675 Approved
0.6121 Remote Similarity NPD4270 Approved
0.6121 Remote Similarity NPD4269 Approved
0.6116 Remote Similarity NPD5785 Approved
0.6111 Remote Similarity NPD8338 Approved
0.6111 Remote Similarity NPD6845 Suspended
0.6098 Remote Similarity NPD5282 Discontinued
0.6098 Remote Similarity NPD7748 Approved
0.6077 Remote Similarity NPD5697 Approved
0.6068 Remote Similarity NPD7154 Phase 3
0.6061 Remote Similarity NPD4634 Approved
0.6061 Remote Similarity NPD6883 Approved
0.6061 Remote Similarity NPD7290 Approved
0.6061 Remote Similarity NPD7102 Approved
0.6056 Remote Similarity NPD8336 Approved
0.6056 Remote Similarity NPD8337 Approved
0.605 Remote Similarity NPD4249 Approved
0.6048 Remote Similarity NPD7228 Approved
0.6034 Remote Similarity NPD5369 Approved
0.6031 Remote Similarity NPD7320 Approved
0.6029 Remote Similarity NPD7500 Approved
0.6017 Remote Similarity NPD6400 Clinical (unspecified phase)
0.6016 Remote Similarity NPD8138 Approved
0.6016 Remote Similarity NPD8086 Approved
0.6016 Remote Similarity NPD8139 Approved
0.6016 Remote Similarity NPD8082 Approved
0.6016 Remote Similarity NPD6399 Phase 3
0.6016 Remote Similarity NPD8083 Approved
0.6016 Remote Similarity NPD8085 Approved
0.6016 Remote Similarity NPD8084 Approved
0.6015 Remote Similarity NPD6847 Approved
0.6015 Remote Similarity NPD6869 Approved
0.6015 Remote Similarity NPD6617 Approved
0.6 Remote Similarity NPD7604 Phase 2
0.6 Remote Similarity NPD6067 Discontinued
0.6 Remote Similarity NPD7329 Approved
0.5985 Remote Similarity NPD6014 Approved
0.5985 Remote Similarity NPD6012 Approved
0.5985 Remote Similarity NPD6013 Approved
0.5983 Remote Similarity NPD6435 Approved
0.5971 Remote Similarity NPD5983 Phase 2
0.5969 Remote Similarity NPD8275 Approved
0.5969 Remote Similarity NPD8276 Approved
0.5968 Remote Similarity NPD7900 Approved
0.5968 Remote Similarity NPD7901 Clinical (unspecified phase)
0.5966 Remote Similarity NPD1694 Approved
0.5966 Remote Similarity NPD5363 Approved
0.5954 Remote Similarity NPD5701 Approved
0.5948 Remote Similarity NPD4822 Approved
0.5948 Remote Similarity NPD4252 Approved
0.5948 Remote Similarity NPD4820 Approved
0.5948 Remote Similarity NPD4819 Approved
0.5948 Remote Similarity NPD5790 Clinical (unspecified phase)
0.5948 Remote Similarity NPD4821 Approved
0.5935 Remote Similarity NPD7515 Phase 2
0.5932 Remote Similarity NPD5362 Discontinued
0.5923 Remote Similarity NPD8081 Approved
0.5915 Remote Similarity NPD6336 Discontinued
0.5909 Remote Similarity NPD6011 Approved
0.5896 Remote Similarity NPD8407 Phase 2
0.5891 Remote Similarity NPD5211 Phase 2
0.5891 Remote Similarity NPD7632 Discontinued
0.589 Remote Similarity NPD8449 Approved
0.5878 Remote Similarity NPD8393 Approved
0.5876 Remote Similarity NPD7879 Clinical (unspecified phase)
0.5864 Remote Similarity NPD8455 Phase 2
0.585 Remote Similarity NPD8450 Suspended
0.5838 Remote Similarity NPD8313 Approved
0.5838 Remote Similarity NPD8312 Approved
0.5824 Remote Similarity NPD8470 Clinical (unspecified phase)
0.5814 Remote Similarity NPD7240 Approved
0.5814 Remote Similarity NPD8368 Discontinued
0.5812 Remote Similarity NPD5368 Approved
0.5806 Remote Similarity NPD7625 Phase 1
0.5806 Remote Similarity NPD8035 Phase 2
0.5806 Remote Similarity NPD8034 Phase 2
0.5802 Remote Similarity NPD5141 Approved
0.5798 Remote Similarity NPD3670 Clinical (unspecified phase)
0.5798 Remote Similarity NPD3669 Approved
0.5789 Remote Similarity NPD7074 Phase 3
0.5789 Remote Similarity NPD8384 Approved
0.5789 Remote Similarity NPD8039 Approved
0.5784 Remote Similarity NPD8319 Approved
0.5784 Remote Similarity NPD8320 Phase 1

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data