Structure

Physi-Chem Properties

Molecular Weight:  2499.17
Volume:  2384.387
LogP:  2.158
LogD:  0.907
LogS:  -1.99
# Rotatable Bonds:  48
TPSA:  867.24
# H-Bond Aceptor:  56
# H-Bond Donor:  29
# Rings:  15
# Heavy Atoms:  56

MedChem Properties

QED Drug-Likeness Score:  0.012
Synthetic Accessibility Score:  9.231
Fsp3:  0.847
Lipinski Rule-of-5:  Rejected
Pfizer Rule:  Accepted
GSK Rule:  Rejected
BMS Rule:  1
Golden Triangle Rule:  Rejected
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -6.887
MDCK Permeability:  0.017777567729353905
Pgp-inhibitor:  0.001
Pgp-substrate:  1.0
Human Intestinal Absorption (HIA):  1.0
20% Bioavailability (F20%):  0.0
30% Bioavailability (F30%):  1.0

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.721
Plasma Protein Binding (PPB):  32.14408493041992%
Volume Distribution (VD):  -1.11
Pgp-substrate:  17.45604705810547%

ADMET: Metabolism

CYP1A2-inhibitor:  0.0
CYP1A2-substrate:  0.078
CYP2C19-inhibitor:  0.0
CYP2C19-substrate:  0.048
CYP2C9-inhibitor:  0.0
CYP2C9-substrate:  0.0
CYP2D6-inhibitor:  0.0
CYP2D6-substrate:  0.002
CYP3A4-inhibitor:  0.095
CYP3A4-substrate:  0.0

ADMET: Excretion

Clearance (CL):  -3.129
Half-life (T1/2):  0.719

ADMET: Toxicity

hERG Blockers:  0.122
Human Hepatotoxicity (H-HT):  0.156
Drug-inuced Liver Injury (DILI):  0.017
AMES Toxicity:  0.017
Rat Oral Acute Toxicity:  0.004
Maximum Recommended Daily Dose:  0.073
Skin Sensitization:  0.031
Carcinogencity:  0.005
Eye Corrosion:  0.003
Eye Irritation:  0.001
Respiratory Toxicity:  0.038

Download Data

Data Type Select
General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs  

  Natural Product: NPC324933

Natural Product ID:  NPC324933
Common Name*:   Albizoside A
IUPAC Name:   [(2S,3R,4S,5S,6R)-3-[(2S,3R,4S,5S,6S)-5-[(2S,3R,4R,5S)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]oxy-3-hydroxy-6-methyl-4-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxyoxan-2-yl]oxy-4,5-dihydroxy-6-(hydroxymethyl)oxan-2-yl] (3S,4aR,5R,6aR,6aS,6bR,8aR,10S,12aR,14bS)-3-[(2E,6S)-6-[(2S,3R,4R,5S,6R)-5-[(2E,6S)-6-[(2S,3R,4S,5S,6R)-4,5-dihydroxy-3-[(2E,6S)-2-(hydroxymethyl)-6-methyl-6-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyocta-2,7-dienoyl]oxy-6-methyloxan-2-yl]oxy-2,6-dimethylocta-2,7-dienoyl]oxy-3,4-dihydroxy-6-methyloxan-2-yl]oxy-2-(hydroxymethyl)-6-methylocta-2,7-dienoyl]oxy-10-[(2R,3R,4S,5S,6R)-6-[[(2R,3R,4S,5R,6R)-4,5-dihydroxy-6-methyl-3-[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxyoxan-2-yl]oxymethyl]-3,4,5-trihydroxyoxan-2-yl]oxy-5-hydroxy-2,2,6a,6b,9,9,12a-heptamethyl-1,3,4,5,6,6a,7,8,8a,10,11,12,13,14b-tetradecahydropicene-4a-carboxylate
Synonyms:  
Standard InCHIKey:  HURMKHBJYJPKHH-UTEFUEFASA-N
Standard InCHI:  InChI=1S/C118H186O56/c1-20-112(14,172-104-87(145)76(134)68(126)49(5)154-104)35-25-28-55(42-120)98(150)166-95-80(138)70(128)51(7)156-108(95)174-114(16,22-3)33-23-26-48(4)96(148)165-90-52(8)158-105(88(146)82(90)140)173-113(15,21-2)34-24-27-54(41-119)97(149)163-67-40-118(109(151)171-107-94(81(139)73(131)60(44-122)161-107)170-103-89(147)92(168-102-86(144)77(135)72(130)59(43-121)159-102)91(53(9)157-103)167-101-84(142)74(132)61(45-123)160-101)57(38-110(67,10)11)56-29-30-64-115(17)36-32-66(111(12,13)63(115)31-37-116(64,18)117(56,19)39-65(118)125)164-100-85(143)78(136)75(133)62(162-100)47-153-106-93(79(137)69(127)50(6)155-106)169-99-83(141)71(129)58(124)46-152-99/h20-22,26-29,49-53,57-95,99-108,119-147H,1-3,23-25,30-47H2,4-19H3/b48-26+,54-27+,55-28+/t49-,50-,51-,52-,53+,57+,58-,59-,60-,61+,62-,63+,64-,65-,66+,67+,68-,69+,70-,71+,72-,73-,74+,75-,76+,77+,78+,79+,80+,81+,82-,83-,84-,85-,86-,87-,88-,89-,90-,91+,92+,93-,94-,95-,99+,100+,101+,102+,103+,104+,105+,106-,107+,108+,112-,113-,114-,115+,116-,117-,118-/m1/s1
SMILES:  CC1C(C(C(C(O1)OC(C)(CCC=C(CO)C(=O)OC2C(C(C(OC2OC(C)(CCC=C(C)C(=O)OC3C(OC(C(C3O)O)OC(C)(CCC=C(CO)C(=O)OC4CC5(C(CC4(C)C)C6=CCC7C8(CCC(C(C8CCC7(C6(CC5O)C)C)(C)C)OC9C(C(C(C(O9)COC1C(C(C(C(O1)C)O)O)OC1C(C(C(CO1)O)O)O)O)O)O)C)C(=O)OC1C(C(C(C(O1)CO)O)O)OC1C(C(C(C(O1)C)OC1C(C(C(O1)CO)O)O)OC1C(C(C(C(O1)CO)O)O)O)O)C=C)C)C=C)C)O)O)C=C)O)O)O
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL564590
PubChem CID:   42639814
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000012] Lipids and lipid-like molecules
      • [CHEMONTID:0000259] Prenol lipids
        • [CHEMONTID:0002049] Terpene glycosides
          • [CHEMONTID:0001580] Triterpene glycosides
            • [CHEMONTID:0002358] Triterpene saponins

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO1500 Albizia chinensis Species Fabaceae Eukaryota n.a. stem n.a. PMID[19256478]
NPO1500 Albizia chinensis Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT180 Cell Line HCT-8 Homo sapiens IC50 = 5600.0 nM PMID[517487]
NPT181 Cell Line Bel-7402 Homo sapiens IC50 = 2600.0 nM PMID[517487]
NPT547 Cell Line BGC-823 Homo sapiens IC50 = 1600.0 nM PMID[517487]
NPT81 Cell Line A549 Homo sapiens IC50 = 1900.0 nM PMID[517487]
NPT179 Cell Line A2780 Homo sapiens IC50 = 1300.0 nM PMID[517487]
NPT27 Others Unspecified HC50 = 0.4 uM PMID[517487]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC324933 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC475177
1.0 High Similarity NPC322904
1.0 High Similarity NPC233223
1.0 High Similarity NPC475444
1.0 High Similarity NPC473679
1.0 High Similarity NPC196874
1.0 High Similarity NPC183816
1.0 High Similarity NPC319719
0.9917 High Similarity NPC43589
0.9917 High Similarity NPC300655
0.9917 High Similarity NPC222951
0.9917 High Similarity NPC311178
0.975 High Similarity NPC220838
0.975 High Similarity NPC472269
0.975 High Similarity NPC472270
0.975 High Similarity NPC472268
0.975 High Similarity NPC45606
0.975 High Similarity NPC112492
0.975 High Similarity NPC23020
0.9583 High Similarity NPC297950
0.9344 High Similarity NPC470516
0.9091 High Similarity NPC293031
0.9091 High Similarity NPC68767
0.9091 High Similarity NPC51099
0.9091 High Similarity NPC275225
0.9083 High Similarity NPC207738
0.9048 High Similarity NPC476776
0.9048 High Similarity NPC312650
0.9048 High Similarity NPC478154
0.904 High Similarity NPC47995
0.904 High Similarity NPC265841
0.9008 High Similarity NPC473645
0.9008 High Similarity NPC37860
0.9008 High Similarity NPC144644
0.9008 High Similarity NPC476127
0.9008 High Similarity NPC473130
0.9008 High Similarity NPC110385
0.9008 High Similarity NPC267694
0.9008 High Similarity NPC153673
0.9008 High Similarity NPC476150
0.9008 High Similarity NPC268184
0.9008 High Similarity NPC142151
0.9 High Similarity NPC105800
0.9 High Similarity NPC232237
0.8984 High Similarity NPC110700
0.8984 High Similarity NPC279915
0.8976 High Similarity NPC478151
0.8976 High Similarity NPC476779
0.8976 High Similarity NPC225791
0.8968 High Similarity NPC476775
0.8968 High Similarity NPC478155
0.8968 High Similarity NPC271610
0.8968 High Similarity NPC25998
0.8968 High Similarity NPC476780
0.8968 High Similarity NPC476774
0.896 High Similarity NPC470475
0.896 High Similarity NPC470476
0.8926 High Similarity NPC470915
0.8926 High Similarity NPC470911
0.8926 High Similarity NPC470517
0.8926 High Similarity NPC477464
0.8926 High Similarity NPC471577
0.8917 High Similarity NPC220160
0.8917 High Similarity NPC104137
0.8917 High Similarity NPC191827
0.8917 High Similarity NPC473452
0.8917 High Similarity NPC470876
0.8917 High Similarity NPC69811
0.8917 High Similarity NPC286457
0.8917 High Similarity NPC123522
0.8917 High Similarity NPC475209
0.8917 High Similarity NPC309223
0.8917 High Similarity NPC102505
0.8917 High Similarity NPC473824
0.8917 High Similarity NPC33012
0.8917 High Similarity NPC475119
0.8917 High Similarity NPC8524
0.8917 High Similarity NPC475514
0.8917 High Similarity NPC85154
0.8906 High Similarity NPC476778
0.8906 High Similarity NPC476777
0.8898 High Similarity NPC71391
0.8898 High Similarity NPC478152
0.8898 High Similarity NPC277212
0.8898 High Similarity NPC478153
0.8898 High Similarity NPC30279
0.8898 High Similarity NPC473918
0.8898 High Similarity NPC46823
0.8898 High Similarity NPC192765
0.8898 High Similarity NPC478150
0.8898 High Similarity NPC178264
0.8889 High Similarity NPC472267
0.8889 High Similarity NPC252289
0.8889 High Similarity NPC107536
0.8889 High Similarity NPC88311
0.8889 High Similarity NPC115656
0.8889 High Similarity NPC470518
0.8889 High Similarity NPC97918
0.8889 High Similarity NPC11577
0.8889 High Similarity NPC252657
0.8889 High Similarity NPC141600
0.8889 High Similarity NPC305793
0.8889 High Similarity NPC280029
0.8889 High Similarity NPC1314
0.8889 High Similarity NPC273878
0.8889 High Similarity NPC269484
0.8889 High Similarity NPC244296
0.8889 High Similarity NPC82380
0.8889 High Similarity NPC9470
0.8889 High Similarity NPC477196
0.8852 High Similarity NPC476991
0.8843 High Similarity NPC471548
0.8843 High Similarity NPC470515
0.8843 High Similarity NPC475899
0.8843 High Similarity NPC36831
0.8843 High Similarity NPC237191
0.8833 High Similarity NPC75287
0.8833 High Similarity NPC305267
0.8833 High Similarity NPC51465
0.8833 High Similarity NPC291903
0.8833 High Similarity NPC37134
0.8833 High Similarity NPC26626
0.8833 High Similarity NPC288205
0.8833 High Similarity NPC476992
0.8828 High Similarity NPC316915
0.8819 High Similarity NPC478064
0.8819 High Similarity NPC475377
0.8819 High Similarity NPC478065
0.8819 High Similarity NPC172374
0.8819 High Similarity NPC477197
0.8819 High Similarity NPC329993
0.8819 High Similarity NPC262796
0.8819 High Similarity NPC264566
0.8819 High Similarity NPC134914
0.8819 High Similarity NPC301639
0.8819 High Similarity NPC475167
0.8819 High Similarity NPC45346
0.8819 High Similarity NPC476074
0.8819 High Similarity NPC173435
0.881 High Similarity NPC477192
0.881 High Similarity NPC477194
0.881 High Similarity NPC477193
0.881 High Similarity NPC477191
0.88 High Similarity NPC470218
0.878 High Similarity NPC170084
0.878 High Similarity NPC476204
0.878 High Similarity NPC477463
0.877 High Similarity NPC51564
0.877 High Similarity NPC25663
0.877 High Similarity NPC473386
0.877 High Similarity NPC470914
0.877 High Similarity NPC135849
0.876 High Similarity NPC474483
0.876 High Similarity NPC148417
0.876 High Similarity NPC136768
0.876 High Similarity NPC471580
0.876 High Similarity NPC471547
0.876 High Similarity NPC110633
0.876 High Similarity NPC473405
0.876 High Similarity NPC68175
0.876 High Similarity NPC300419
0.875 High Similarity NPC475160
0.875 High Similarity NPC54636
0.875 High Similarity NPC76972
0.875 High Similarity NPC224381
0.875 High Similarity NPC123199
0.875 High Similarity NPC227551
0.875 High Similarity NPC473714
0.875 High Similarity NPC471550
0.875 High Similarity NPC469782
0.875 High Similarity NPC43550
0.875 High Similarity NPC305981
0.875 High Similarity NPC65105
0.875 High Similarity NPC293330
0.875 High Similarity NPC71065
0.875 High Similarity NPC119592
0.875 High Similarity NPC298034
0.875 High Similarity NPC57484
0.875 High Similarity NPC41061
0.875 High Similarity NPC236638
0.875 High Similarity NPC475140
0.875 High Similarity NPC161717
0.875 High Similarity NPC309907
0.875 High Similarity NPC67857
0.875 High Similarity NPC79643
0.875 High Similarity NPC477195
0.875 High Similarity NPC202828
0.875 High Similarity NPC60557
0.875 High Similarity NPC100639
0.875 High Similarity NPC475486
0.875 High Similarity NPC261506
0.875 High Similarity NPC294453
0.875 High Similarity NPC70809
0.875 High Similarity NPC231240
0.875 High Similarity NPC476068
0.875 High Similarity NPC204414
0.875 High Similarity NPC164389
0.875 High Similarity NPC250247
0.875 High Similarity NPC471385
0.875 High Similarity NPC4328

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC324933 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.8492 Intermediate Similarity NPD8328 Phase 3
0.848 Intermediate Similarity NPD8516 Approved
0.848 Intermediate Similarity NPD8517 Approved
0.848 Intermediate Similarity NPD8515 Approved
0.8333 Intermediate Similarity NPD8513 Phase 3
0.8211 Intermediate Similarity NPD8133 Approved
0.811 Intermediate Similarity NPD8377 Approved
0.811 Intermediate Similarity NPD8294 Approved
0.8099 Intermediate Similarity NPD6686 Approved
0.8047 Intermediate Similarity NPD8379 Approved
0.8047 Intermediate Similarity NPD8335 Approved
0.8047 Intermediate Similarity NPD8380 Approved
0.8047 Intermediate Similarity NPD8378 Approved
0.8047 Intermediate Similarity NPD8296 Approved
0.803 Intermediate Similarity NPD7319 Approved
0.8016 Intermediate Similarity NPD8295 Clinical (unspecified phase)
0.7939 Intermediate Similarity NPD7507 Approved
0.7907 Intermediate Similarity NPD8033 Approved
0.7903 Intermediate Similarity NPD8413 Clinical (unspecified phase)
0.782 Intermediate Similarity NPD7736 Approved
0.7769 Intermediate Similarity NPD7503 Approved
0.7742 Intermediate Similarity NPD8132 Clinical (unspecified phase)
0.7734 Intermediate Similarity NPD7115 Discovery
0.7674 Intermediate Similarity NPD7328 Approved
0.7674 Intermediate Similarity NPD7327 Approved
0.7615 Intermediate Similarity NPD7516 Approved
0.7444 Intermediate Similarity NPD6370 Approved
0.744 Intermediate Similarity NPD6412 Phase 2
0.7438 Intermediate Similarity NPD4225 Approved
0.7353 Intermediate Similarity NPD8074 Phase 3
0.7353 Intermediate Similarity NPD8293 Discontinued
0.7333 Intermediate Similarity NPD7492 Approved
0.7293 Intermediate Similarity NPD6054 Approved
0.7279 Intermediate Similarity NPD6616 Approved
0.7236 Intermediate Similarity NPD7640 Approved
0.7236 Intermediate Similarity NPD7639 Approved
0.7226 Intermediate Similarity NPD7078 Approved
0.7213 Intermediate Similarity NPD7902 Approved
0.7188 Intermediate Similarity NPD4061 Clinical (unspecified phase)
0.7164 Intermediate Similarity NPD6319 Approved
0.7154 Intermediate Similarity NPD7638 Approved
0.7132 Intermediate Similarity NPD5955 Clinical (unspecified phase)
0.7111 Intermediate Similarity NPD6015 Approved
0.7111 Intermediate Similarity NPD6016 Approved
0.7109 Intermediate Similarity NPD5345 Clinical (unspecified phase)
0.7107 Intermediate Similarity NPD7748 Approved
0.7059 Intermediate Similarity NPD5988 Approved
0.7037 Intermediate Similarity NPD6059 Approved
0.7023 Intermediate Similarity NPD6882 Approved
0.7023 Intermediate Similarity NPD8297 Approved
0.7016 Intermediate Similarity NPD8029 Clinical (unspecified phase)
0.6967 Remote Similarity NPD7900 Approved
0.6967 Remote Similarity NPD7901 Clinical (unspecified phase)
0.6942 Remote Similarity NPD7515 Phase 2
0.694 Remote Similarity NPD6009 Approved
0.6899 Remote Similarity NPD5954 Clinical (unspecified phase)
0.6842 Remote Similarity NPD4632 Approved
0.6818 Remote Similarity NPD6649 Approved
0.6818 Remote Similarity NPD6650 Approved
0.6769 Remote Similarity NPD7899 Clinical (unspecified phase)
0.6744 Remote Similarity NPD8170 Clinical (unspecified phase)
0.6742 Remote Similarity NPD6371 Approved
0.6719 Remote Similarity NPD7632 Discontinued
0.6718 Remote Similarity NPD6881 Approved
0.6718 Remote Similarity NPD6899 Approved
0.6692 Remote Similarity NPD8130 Phase 1
0.6667 Remote Similarity NPD6372 Approved
0.6667 Remote Similarity NPD6373 Approved
0.6643 Remote Similarity NPD6067 Discontinued
0.6641 Remote Similarity NPD5344 Discontinued
0.6641 Remote Similarity NPD5697 Approved
0.6619 Remote Similarity NPD6921 Approved
0.6617 Remote Similarity NPD6883 Approved
0.6617 Remote Similarity NPD4634 Approved
0.6617 Remote Similarity NPD7290 Approved
0.6617 Remote Similarity NPD7102 Approved
0.6585 Remote Similarity NPD46 Approved
0.6585 Remote Similarity NPD6698 Approved
0.6573 Remote Similarity NPD6033 Approved
0.6567 Remote Similarity NPD6847 Approved
0.6567 Remote Similarity NPD6869 Approved
0.6567 Remote Similarity NPD6617 Approved
0.6565 Remote Similarity NPD5739 Approved
0.6565 Remote Similarity NPD7128 Approved
0.6565 Remote Similarity NPD6675 Approved
0.6565 Remote Similarity NPD6402 Approved
0.6554 Remote Similarity NPD7966 Clinical (unspecified phase)
0.6541 Remote Similarity NPD6013 Approved
0.6541 Remote Similarity NPD6012 Approved
0.6541 Remote Similarity NPD6014 Approved
0.6532 Remote Similarity NPD8034 Phase 2
0.6532 Remote Similarity NPD8035 Phase 2
0.6525 Remote Similarity NPD7830 Approved
0.6525 Remote Similarity NPD7829 Approved
0.6525 Remote Similarity NPD7604 Phase 2
0.6503 Remote Similarity NPD8448 Approved
0.65 Remote Similarity NPD5983 Phase 2
0.6494 Remote Similarity NPD7625 Phase 1
0.6488 Remote Similarity NPD7799 Discontinued
0.6483 Remote Similarity NPD8391 Approved
0.6483 Remote Similarity NPD8390 Approved
0.6483 Remote Similarity NPD8392 Approved
0.6466 Remote Similarity NPD6011 Approved
0.6466 Remote Similarity NPD7320 Approved
0.6462 Remote Similarity NPD5211 Phase 2
0.6446 Remote Similarity NPD1694 Approved
0.6439 Remote Similarity NPD6008 Approved
0.6434 Remote Similarity NPD8451 Approved
0.6434 Remote Similarity NPD6336 Discontinued
0.64 Remote Similarity NPD7983 Approved
0.6391 Remote Similarity NPD5701 Approved
0.637 Remote Similarity NPD5956 Approved
0.6364 Remote Similarity NPD5141 Approved
0.6364 Remote Similarity NPD8340 Approved
0.6364 Remote Similarity NPD8299 Approved
0.6364 Remote Similarity NPD8341 Approved
0.6364 Remote Similarity NPD8342 Approved
0.6349 Remote Similarity NPD5778 Approved
0.6349 Remote Similarity NPD5779 Approved
0.6349 Remote Similarity NPD8171 Discontinued
0.6349 Remote Similarity NPD6399 Phase 3
0.6341 Remote Similarity NPD3573 Approved
0.6327 Remote Similarity NPD7260 Phase 2
0.632 Remote Similarity NPD7838 Discovery
0.6308 Remote Similarity NPD5286 Approved
0.6308 Remote Similarity NPD5285 Approved
0.6308 Remote Similarity NPD6648 Approved
0.6308 Remote Similarity NPD4696 Approved
0.6294 Remote Similarity NPD7642 Approved
0.6279 Remote Similarity NPD6084 Phase 2
0.6279 Remote Similarity NPD6083 Phase 2
0.6277 Remote Similarity NPD6053 Discontinued
0.627 Remote Similarity NPD6079 Approved
0.627 Remote Similarity NPD6411 Approved
0.6264 Remote Similarity NPD8313 Approved
0.6264 Remote Similarity NPD8312 Approved
0.626 Remote Similarity NPD3618 Phase 1
0.625 Remote Similarity NPD1698 Clinical (unspecified phase)
0.6242 Remote Similarity NPD8450 Suspended
0.6241 Remote Similarity NPD7101 Approved
0.6241 Remote Similarity NPD7100 Approved
0.6233 Remote Similarity NPD8337 Approved
0.6233 Remote Similarity NPD8336 Approved
0.6212 Remote Similarity NPD5225 Approved
0.6212 Remote Similarity NPD5226 Approved
0.6212 Remote Similarity NPD5224 Approved
0.6212 Remote Similarity NPD4633 Approved
0.6204 Remote Similarity NPD6401 Clinical (unspecified phase)
0.6198 Remote Similarity NPD4752 Clinical (unspecified phase)
0.619 Remote Similarity NPD5785 Approved
0.6179 Remote Similarity NPD7520 Clinical (unspecified phase)
0.6174 Remote Similarity NPD8338 Approved
0.6174 Remote Similarity NPD8449 Approved
0.6172 Remote Similarity NPD5282 Discontinued
0.617 Remote Similarity NPD6335 Approved
0.6165 Remote Similarity NPD5174 Approved
0.6165 Remote Similarity NPD5175 Approved
0.6163 Remote Similarity NPD8470 Clinical (unspecified phase)
0.616 Remote Similarity NPD7513 Clinical (unspecified phase)
0.6154 Remote Similarity NPD6291 Clinical (unspecified phase)
0.6154 Remote Similarity NPD4755 Approved
0.6154 Remote Similarity NPD8444 Approved
0.6143 Remote Similarity NPD6274 Approved
0.6142 Remote Similarity NPD7637 Suspended
0.6136 Remote Similarity NPD8407 Phase 2
0.6136 Remote Similarity NPD5223 Approved
0.6129 Remote Similarity NPD3574 Clinical (unspecified phase)
0.6124 Remote Similarity NPD6356 Clinical (unspecified phase)
0.6111 Remote Similarity NPD5764 Clinical (unspecified phase)
0.6111 Remote Similarity NPD6101 Approved
0.6111 Remote Similarity NPD5328 Approved
0.6107 Remote Similarity NPD5696 Approved
0.6103 Remote Similarity NPD4730 Approved
0.6103 Remote Similarity NPD4729 Approved
0.6099 Remote Similarity NPD6317 Approved
0.6098 Remote Similarity NPD6400 Clinical (unspecified phase)
0.6094 Remote Similarity NPD4202 Approved
0.6083 Remote Similarity NPD7645 Phase 2
0.6077 Remote Similarity NPD7839 Suspended
0.6077 Remote Similarity NPD5221 Approved
0.6077 Remote Similarity NPD5220 Clinical (unspecified phase)
0.6077 Remote Similarity NPD5222 Approved
0.6067 Remote Similarity NPD6845 Suspended
0.6061 Remote Similarity NPD4700 Approved
0.6057 Remote Similarity NPD8368 Discontinued
0.6056 Remote Similarity NPD6314 Approved
0.6056 Remote Similarity NPD6313 Approved
0.6053 Remote Similarity NPD8387 Clinical (unspecified phase)
0.604 Remote Similarity NPD6914 Discontinued
0.6031 Remote Similarity NPD5173 Approved
0.6028 Remote Similarity NPD6868 Approved
0.6022 Remote Similarity NPD7879 Clinical (unspecified phase)
0.6014 Remote Similarity NPD5250 Approved
0.6014 Remote Similarity NPD5251 Approved
0.6014 Remote Similarity NPD5247 Approved
0.6014 Remote Similarity NPD5248 Approved
0.6014 Remote Similarity NPD5249 Phase 3
0.6012 Remote Similarity NPD7228 Approved
0.6 Remote Similarity NPD5330 Approved
0.6 Remote Similarity NPD5695 Phase 3

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data