Structure

Physi-Chem Properties

Molecular Weight:  302.08
Volume:  293.909
LogP:  1.55
LogD:  0.781
LogS:  -2.88
# Rotatable Bonds:  2
TPSA:  96.22
# H-Bond Aceptor:  6
# H-Bond Donor:  3
# Rings:  3
# Heavy Atoms:  6

MedChem Properties

QED Drug-Likeness Score:  0.783
Synthetic Accessibility Score:  3.304
Fsp3:  0.188
Lipinski Rule-of-5:  Accepted
Pfizer Rule:  Accepted
GSK Rule:  Accepted
BMS Rule:  0
Golden Triangle Rule:  Accepted
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -5.088
MDCK Permeability:  5.202251031732885e-06
Pgp-inhibitor:  0.001
Pgp-substrate:  0.185
Human Intestinal Absorption (HIA):  0.009
20% Bioavailability (F20%):  0.026
30% Bioavailability (F30%):  0.01

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.042
Plasma Protein Binding (PPB):  90.63684844970703%
Volume Distribution (VD):  0.958
Pgp-substrate:  7.296760559082031%

ADMET: Metabolism

CYP1A2-inhibitor:  0.069
CYP1A2-substrate:  0.334
CYP2C19-inhibitor:  0.12
CYP2C19-substrate:  0.631
CYP2C9-inhibitor:  0.427
CYP2C9-substrate:  0.96
CYP2D6-inhibitor:  0.223
CYP2D6-substrate:  0.735
CYP3A4-inhibitor:  0.124
CYP3A4-substrate:  0.454

ADMET: Excretion

Clearance (CL):  5.963
Half-life (T1/2):  0.534

ADMET: Toxicity

hERG Blockers:  0.063
Human Hepatotoxicity (H-HT):  0.411
Drug-inuced Liver Injury (DILI):  0.945
AMES Toxicity:  0.077
Rat Oral Acute Toxicity:  0.208
Maximum Recommended Daily Dose:  0.616
Skin Sensitization:  0.701
Carcinogencity:  0.034
Eye Corrosion:  0.003
Eye Irritation:  0.678
Respiratory Toxicity:  0.316

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  Natural Product: NPC176869

Natural Product ID:  NPC176869
Common Name*:   7-O-Methyl-Aromadendrin
IUPAC Name:   (2R,3R)-3,5-dihydroxy-2-(4-hydroxyphenyl)-7-methoxy-2,3-dihydrochromen-4-one
Synonyms:  
Standard InCHIKey:  LZLGHWHSUZVUFZ-JKSUJKDBSA-N
Standard InCHI:  InChI=1S/C16H14O6/c1-21-10-6-11(18)13-12(7-10)22-16(15(20)14(13)19)8-2-4-9(17)5-3-8/h2-7,15-18,20H,1H3/t15-,16+/m0/s1
SMILES:  COc1cc(c2c(c1)O[C@H](c1ccc(cc1)O)[C@H](C2=O)O)O
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL491541
PubChem CID:   181132
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000261] Phenylpropanoids and polyketides
      • [CHEMONTID:0000334] Flavonoids
        • [CHEMONTID:0002585] O-methylated flavonoids
          • [CHEMONTID:0002592] 7-O-methylated flavonoids

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO6333 Annona glabra Species Annonaceae Eukaryota n.a. stem wood n.a. DOI[10.1021/np100247r]
NPO33456 inula viscosa Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[10217718]
NPO6333 Annona glabra Species Annonaceae Eukaryota n.a. n.a. n.a. PMID[10395501]
NPO6333 Annona glabra Species Annonaceae Eukaryota n.a. n.a. n.a. PMID[10425140]
NPO2166 Ajania fruticulosa Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[10425142]
NPO24176 Streptomyces fradiae Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[10757717]
NPO23281 Aplysinella rhax Species Aplysinellidae Eukaryota n.a. n.a. n.a. PMID[10757728]
NPO18509 Fissistigma oldhamii Species Annonaceae Eukaryota n.a. n.a. n.a. PMID[10978218]
NPO24219 Erylus nobilis Species n.a. n.a. n.a. n.a. n.a. PMID[11421740]
NPO24219 Erylus nobilis Species n.a. n.a. n.a. n.a. n.a. PMID[11908993]
NPO21963 Hypericum japonicum Species Hypericaceae Eukaryota n.a. n.a. n.a. PMID[11914965]
NPO24364 Petrosia corticata Species Petrosiidae Eukaryota n.a. n.a. n.a. PMID[12350165]
NPO17823 Lycium chinense Species Solanaceae Eukaryota fruits n.a. n.a. PMID[12467621]
NPO24364 Petrosia corticata Species Petrosiidae Eukaryota n.a. Okinawan, Japan n.a. PMID[14695804]
NPO27122 Plumbago scandens Species Plumbaginaceae Eukaryota n.a. root n.a. PMID[14762525]
NPO24364 Petrosia corticata Species Petrosiidae Eukaryota n.a. n.a. n.a. PMID[15332859]
NPO6333 Annona glabra Species Annonaceae Eukaryota Fruits n.a. n.a. PMID[15568797]
NPO17823 Lycium chinense Species Solanaceae Eukaryota n.a. root n.a. PMID[16212233]
NPO15538 Eucalyptus citriodora Species Myrtaceae Eukaryota Leaves the campus of Panjab University, Chandigarh, India PMID[16989303]
NPO18509 Fissistigma oldhamii Species Annonaceae Eukaryota stem n.a. n.a. PMID[17081761]
NPO24364 Petrosia corticata Species Petrosiidae Eukaryota n.a. n.a. n.a. PMID[17407351]
NPO23281 Aplysinella rhax Species Aplysinellidae Eukaryota n.a. n.a. n.a. PMID[17827010]
NPO20637 Piper acutifolium Species Piperaceae Eukaryota n.a. leaf n.a. PMID[18712933]
NPO23924 Psilotum nudum Species Psilotaceae Eukaryota n.a. n.a. n.a. PMID[20488581]
NPO6333 Annona glabra Species Annonaceae Eukaryota stem Taipei Botanical Garden, Taipei, Taiwan, China 2006-MAR PMID[20828184]
NPO23499 Carpesium faberi Species Asteraceae Eukaryota whole plant Changshou County, Chongqing, China 2008-Aug PMID[21109433]
NPO27261 Carica papaya Species Caricaceae Eukaryota n.a. n.a. n.a. PMID[22305790]
NPO17823 Lycium chinense Species Solanaceae Eukaryota root bark n.a. n.a. PMID[23282106]
NPO4010 Flemingia philippinensis Species Fabaceae Eukaryota Roots n.a. n.a. PMID[24054487]
NPO4010 Flemingia philippinensis Species Fabaceae Eukaryota roots n.a. n.a. PMID[24412339]
NPO15538 Eucalyptus citriodora Species Myrtaceae Eukaryota Essential oil n.a. n.a. PMID[24641242]
NPO6333 Annona glabra Species Annonaceae Eukaryota fruits n.a. n.a. PMID[25499882]
NPO24364 Petrosia corticata Species Petrosiidae Eukaryota n.a. n.a. n.a. PMID[25987373]
NPO17823 Lycium chinense Species Solanaceae Eukaryota Root Bark n.a. n.a. PMID[26982999]
NPO21963 Hypericum japonicum Species Hypericaceae Eukaryota n.a. n.a. n.a. PMID[27116034]
NPO21963 Hypericum japonicum Species Hypericaceae Eukaryota n.a. n.a. n.a. PMID[29667821]
NPO7252 Sonchus oleraceus Species Asteraceae Eukaryota n.a. Molise Region, Italy Autumn 2018 PMID[32803719]
NPO7252 Sonchus oleraceus Species Asteraceae Eukaryota n.a. Molise Region, Italy Spring 2019 PMID[32803719]
NPO7252 Sonchus oleraceus Species Asteraceae Eukaryota n.a. Molise Region, Italy PMID[32803719]
NPO7252 Sonchus oleraceus Species Asteraceae Eukaryota n.a The rural area of Viçosa, State of Minas Gerais (MG), Brazil Adult stage PMID[35282307]
NPO27457 Eupatorium capillifolium Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[6790676]
NPO24364 Petrosia corticata Species Petrosiidae Eukaryota n.a. n.a. n.a. PMID[7807132]
NPO17823 Lycium chinense Species Solanaceae Eukaryota fruits n.a. n.a. PMID[9090870]
NPO6333 Annona glabra Species Annonaceae Eukaryota n.a. n.a. n.a. PMID[9584397]
NPO6333 Annona glabra Species Annonaceae Eukaryota n.a. n.a. n.a. PMID[9599260]
NPO27261 Carica papaya Species Caricaceae Eukaryota n.a. n.a. n.a. Database[Article]
NPO27261 Carica papaya Species Caricaceae Eukaryota n.a. n.a. Database[FooDB]
NPO27261 Carica papaya Species Caricaceae Eukaryota Fruit n.a. n.a. Database[FooDB]
NPO27261 Carica papaya Species Caricaceae Eukaryota Latex Exudate n.a. n.a. Database[FooDB]
NPO27261 Carica papaya Species Caricaceae Eukaryota Leaf n.a. n.a. Database[FooDB]
NPO27261 Carica papaya Species Caricaceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO27261 Carica papaya Species Caricaceae Eukaryota n.a. n.a. Database[FooDB]
NPO21963 Hypericum japonicum Species Hypericaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO4010 Flemingia philippinensis Species Fabaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO21625 Bidens tripartita Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO6333 Annona glabra Species Annonaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO22455 Corydalis sewerzowi Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO27261 Carica papaya Species Caricaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO23924 Psilotum nudum Species Psilotaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO17823 Lycium chinense Species Solanaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO14267 Seseli tortuosum Species Apiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO27261 Carica papaya Species Caricaceae Eukaryota Fruits n.a. Database[Phenol-Explorer]
NPO21963 Hypericum japonicum Species Hypericaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO15538 Eucalyptus citriodora Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO6333 Annona glabra Species Annonaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO25003 Sorocea bonplandii Species Moraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO4010 Flemingia philippinensis Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO27261 Carica papaya Species Caricaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO18440 Blepharostoma trichophyllum Species Pseudolepicoleaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO14267 Seseli tortuosum Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO21625 Bidens tripartita Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO22455 Corydalis sewerzowi Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO23924 Psilotum nudum Species Psilotaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO17823 Lycium chinense Species Solanaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO14267 Seseli tortuosum Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO17823 Lycium chinense Species Solanaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO21963 Hypericum japonicum Species Hypericaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO27261 Carica papaya Species Caricaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO4010 Flemingia philippinensis Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO24090 Aplysilla rosea Species Darwinellidae Eukaryota n.a. Austrila n.a. Database[Title]
NPO17823 Lycium chinense Species Solanaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO23211 Xyris indica Species Xyridaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23318 Aconitum palmatum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24176 Streptomyces fradiae Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO247 Urceolaria bryophila Species Trichodinidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24364 Petrosia corticata Species Petrosiidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23920 Amanita pseudoporphyria Species Amanitaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23438 Berchemia formosana Species Rhamnaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6333 Annona glabra Species Annonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27281 Grindelia spathulata Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27445 Artemisia filifolia Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24290 Claviceps microcephala Species Clavicipitaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24005 Mytilus galloprovincialis Species Mytilidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23043 Cryptolestes pusillus Species Laemophloeidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24132 Euphausia superba Species Euphausiidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23377 Stephanitis pyrioides Species Tingidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24249 Codonopsis cordifolioidea Species Campanulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23413 Crematogaster africana Species Formicidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8566 Astragalus curvicarpus Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2166 Ajania fruticulosa Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19046 Pyrenula pseudobufonia Species Pyrenulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23281 Aplysinella rhax Species Aplysinellidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23924 Psilotum nudum Species Psilotaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23545 Vellozia streptophylla Species Velloziaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18509 Fissistigma oldhamii Species Annonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22324 Erium villosum Species Pseudococcidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27122 Plumbago scandens Species Plumbaginaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24090 Aplysilla rosea Species Darwinellidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26067 Acacia sutherlandii Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4010 Flemingia philippinensis Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23696 Solanum diflorum Species Solanaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14267 Seseli tortuosum Species Apiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25003 Sorocea bonplandii Species Moraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27261 Carica papaya Species Caricaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23834 Chlamydomonas allensworthii Species Chlamydomonadaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20998 Machaerium kuhlmannii Species Dolichopodidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5782 Aniba rosaeodora Species Lauraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23739 Staehelina fruticosa Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24219 Erylus nobilis Species n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO23884 Hippobroma longiflora Species Campanulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21625 Bidens tripartita Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23499 Carpesium faberi Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24048 Cladonia pityrea Species Cladoniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23114 Cacalia robusta Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13127 Vallaris heynei Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23610 Aconitum tianschanicum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17823 Lycium chinense Species Solanaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22595 Trapa bicornis Species Lythraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18440 Blepharostoma trichophyllum Species Pseudolepicoleaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8593 Zygosaccharomyces rouxii Species Saccharomycetaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7252 Sonchus oleraceus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO738 Dahlstedtia pentaphylla Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16043 Centaurea musimomum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2901 Ilex taubertiana Species Aquifoliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27457 Eupatorium capillifolium Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18976 Centaurea arbutifolia Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23792 Gomphostemma parviflorum Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25864 Kunzea ericoides Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1715 Eucalyptus radiata Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15589 Alcyonium digitatum Species Alcyoniidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24408 Ariocarpus fissuratus Species Cactaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25767 Aplysia juliana Species Aplysiidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17737 Lepidorhinus squamosus n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO15538 Eucalyptus citriodora Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23459 Onoseris alata Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23961 Scytonema ocellatum Species Scytonemataceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO19535 Senecio zoellneri Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12429 Acicarpha tribuloides Species Calyceraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21963 Hypericum japonicum Species Hypericaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22143 Genista sessilifolia Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20637 Piper acutifolium Species Piperaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23364 Lambertella corni Species Rutstroemiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22455 Corydalis sewerzowi Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24445 Arbacia pustulosa Species Arbaciidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21827 Albatrellus caeruleoporus Species Albatrellaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5573 Oxycoccus quadripetalus n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT32 Organism Mus musculus Mus musculus Inhibition = 78.0 % PMID[533245]
NPT32 Organism Mus musculus Mus musculus Inhibition = 3.0 % PMID[533245]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC176869 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC122828
1.0 High Similarity NPC3779
1.0 High Similarity NPC44721
1.0 High Similarity NPC40086
1.0 High Similarity NPC476182
1.0 High Similarity NPC211466
0.9857 High Similarity NPC208176
0.9857 High Similarity NPC142731
0.9857 High Similarity NPC306607
0.9857 High Similarity NPC49130
0.9857 High Similarity NPC326506
0.9857 High Similarity NPC4152
0.9857 High Similarity NPC279417
0.9857 High Similarity NPC62290
0.9787 High Similarity NPC1940
0.9787 High Similarity NPC148011
0.9722 High Similarity NPC254412
0.9722 High Similarity NPC262038
0.9722 High Similarity NPC278476
0.9722 High Similarity NPC262039
0.9722 High Similarity NPC319910
0.9718 High Similarity NPC472918
0.9655 High Similarity NPC243171
0.9655 High Similarity NPC138288
0.9655 High Similarity NPC171651
0.9655 High Similarity NPC35567
0.9655 High Similarity NPC217149
0.9655 High Similarity NPC216035
0.9653 High Similarity NPC105136
0.965 High Similarity NPC218569
0.9648 High Similarity NPC229190
0.9589 High Similarity NPC293286
0.9583 High Similarity NPC277032
0.9583 High Similarity NPC477941
0.958 High Similarity NPC21835
0.9524 High Similarity NPC111341
0.9524 High Similarity NPC304207
0.9524 High Similarity NPC48579
0.9524 High Similarity NPC217706
0.9524 High Similarity NPC304745
0.9524 High Similarity NPC207809
0.9524 High Similarity NPC259710
0.9517 High Similarity NPC267117
0.9504 High Similarity NPC150023
0.95 High Similarity NPC274784
0.95 High Similarity NPC265871
0.95 High Similarity NPC222342
0.95 High Similarity NPC329203
0.95 High Similarity NPC225153
0.95 High Similarity NPC20709
0.95 High Similarity NPC310135
0.95 High Similarity NPC150648
0.9459 High Similarity NPC10754
0.9459 High Similarity NPC326037
0.9459 High Similarity NPC215917
0.9459 High Similarity NPC320825
0.9459 High Similarity NPC20530
0.9459 High Similarity NPC13858
0.9456 High Similarity NPC203080
0.9456 High Similarity NPC180301
0.9456 High Similarity NPC244250
0.9456 High Similarity NPC20907
0.9456 High Similarity NPC268193
0.9456 High Similarity NPC248793
0.9452 High Similarity NPC471229
0.9452 High Similarity NPC472422
0.9452 High Similarity NPC471676
0.9452 High Similarity NPC295650
0.9452 High Similarity NPC472420
0.9452 High Similarity NPC244577
0.9452 High Similarity NPC263384
0.9452 High Similarity NPC471677
0.9448 High Similarity NPC472628
0.9444 High Similarity NPC472627
0.9433 High Similarity NPC188243
0.9433 High Similarity NPC6407
0.9433 High Similarity NPC110228
0.9396 High Similarity NPC6985
0.9396 High Similarity NPC52530
0.9388 High Similarity NPC475790
0.9388 High Similarity NPC150123
0.9388 High Similarity NPC244583
0.9388 High Similarity NPC260491
0.9388 High Similarity NPC56232
0.9388 High Similarity NPC240476
0.9388 High Similarity NPC36835
0.9388 High Similarity NPC61506
0.9388 High Similarity NPC161881
0.9388 High Similarity NPC210597
0.9388 High Similarity NPC10807
0.9388 High Similarity NPC246162
0.9388 High Similarity NPC9743
0.9375 High Similarity NPC472629
0.9366 High Similarity NPC312391
0.9366 High Similarity NPC324386
0.9366 High Similarity NPC213322
0.9366 High Similarity NPC4743
0.9362 High Similarity NPC241838
0.9362 High Similarity NPC152042
0.9362 High Similarity NPC143799
0.9362 High Similarity NPC140890
0.9357 High Similarity NPC32441
0.9357 High Similarity NPC295261
0.9357 High Similarity NPC13768
0.9357 High Similarity NPC287068
0.9357 High Similarity NPC12296
0.9357 High Similarity NPC107586
0.9357 High Similarity NPC287246
0.9357 High Similarity NPC79943
0.9357 High Similarity NPC243083
0.9357 High Similarity NPC296490
0.9333 High Similarity NPC22192
0.9329 High Similarity NPC471500
0.9329 High Similarity NPC250922
0.9324 High Similarity NPC209760
0.9324 High Similarity NPC7989
0.9324 High Similarity NPC256346
0.9324 High Similarity NPC27532
0.9324 High Similarity NPC100134
0.9324 High Similarity NPC236756
0.9324 High Similarity NPC223701
0.9324 High Similarity NPC246328
0.9324 High Similarity NPC106625
0.9324 High Similarity NPC325028
0.9324 High Similarity NPC311579
0.9324 High Similarity NPC472583
0.932 High Similarity NPC472636
0.932 High Similarity NPC209846
0.932 High Similarity NPC474023
0.932 High Similarity NPC328740
0.932 High Similarity NPC289774
0.932 High Similarity NPC477897
0.932 High Similarity NPC474021
0.9315 High Similarity NPC89442
0.9306 High Similarity NPC470890
0.9306 High Similarity NPC87486
0.9306 High Similarity NPC124780
0.9301 High Similarity NPC66515
0.9301 High Similarity NPC32739
0.9301 High Similarity NPC324436
0.9301 High Similarity NPC177354
0.9301 High Similarity NPC78
0.9301 High Similarity NPC328164
0.9301 High Similarity NPC223500
0.9301 High Similarity NPC306829
0.9301 High Similarity NPC125855
0.9301 High Similarity NPC194432
0.9301 High Similarity NPC296917
0.9301 High Similarity NPC64915
0.9301 High Similarity NPC166934
0.9301 High Similarity NPC148757
0.9301 High Similarity NPC73028
0.9301 High Similarity NPC324134
0.9301 High Similarity NPC228504
0.9301 High Similarity NPC10937
0.9301 High Similarity NPC220998
0.9301 High Similarity NPC166482
0.9301 High Similarity NPC182852
0.9301 High Similarity NPC40833
0.9301 High Similarity NPC167624
0.9301 High Similarity NPC107572
0.9301 High Similarity NPC227579
0.9301 High Similarity NPC37496
0.9301 High Similarity NPC265040
0.9301 High Similarity NPC76338
0.9301 High Similarity NPC76372
0.9301 High Similarity NPC1089
0.9301 High Similarity NPC161506
0.9296 High Similarity NPC184536
0.9296 High Similarity NPC76445
0.9296 High Similarity NPC129853
0.9296 High Similarity NPC103904
0.9296 High Similarity NPC59951
0.9296 High Similarity NPC103342
0.9296 High Similarity NPC281207
0.9296 High Similarity NPC146679
0.9296 High Similarity NPC230285
0.9296 High Similarity NPC284550
0.9296 High Similarity NPC269652
0.9291 High Similarity NPC99333
0.9291 High Similarity NPC280284
0.9291 High Similarity NPC147686
0.9291 High Similarity NPC118813
0.9291 High Similarity NPC188947
0.9291 High Similarity NPC329225
0.9291 High Similarity NPC472460
0.9272 High Similarity NPC282009
0.9272 High Similarity NPC287328
0.9272 High Similarity NPC153342
0.9272 High Similarity NPC470183
0.9272 High Similarity NPC263449
0.9267 High Similarity NPC108831
0.9267 High Similarity NPC182634
0.9267 High Similarity NPC471479
0.9267 High Similarity NPC471515
0.9262 High Similarity NPC99233
0.9262 High Similarity NPC477958
0.9262 High Similarity NPC473241
0.9262 High Similarity NPC476169
0.9262 High Similarity NPC471116

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC176869 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.9357 High Similarity NPD1552 Clinical (unspecified phase)
0.9357 High Similarity NPD1550 Clinical (unspecified phase)
0.9291 High Similarity NPD1549 Phase 2
0.9257 High Similarity NPD1934 Approved
0.9172 High Similarity NPD4378 Clinical (unspecified phase)
0.9139 High Similarity NPD7075 Discontinued
0.9122 High Similarity NPD4380 Phase 2
0.9067 High Similarity NPD7096 Clinical (unspecified phase)
0.9067 High Similarity NPD2393 Clinical (unspecified phase)
0.9032 High Similarity NPD6167 Clinical (unspecified phase)
0.9032 High Similarity NPD6168 Clinical (unspecified phase)
0.9032 High Similarity NPD6166 Phase 2
0.9013 High Similarity NPD4381 Clinical (unspecified phase)
0.9 High Similarity NPD6801 Discontinued
0.8973 High Similarity NPD6799 Approved
0.8861 High Similarity NPD7804 Clinical (unspecified phase)
0.8851 High Similarity NPD1512 Approved
0.8811 High Similarity NPD1510 Phase 2
0.8794 High Similarity NPD1240 Approved
0.875 High Similarity NPD2796 Approved
0.8742 High Similarity NPD6599 Discontinued
0.8716 High Similarity NPD1511 Approved
0.8701 High Similarity NPD3882 Suspended
0.8693 High Similarity NPD2801 Approved
0.8671 High Similarity NPD1607 Approved
0.8667 High Similarity NPD5403 Approved
0.8658 High Similarity NPD5401 Approved
0.8636 High Similarity NPD8443 Clinical (unspecified phase)
0.8636 High Similarity NPD3817 Phase 2
0.8634 High Similarity NPD6797 Phase 2
0.858 High Similarity NPD7251 Discontinued
0.8571 High Similarity NPD7074 Phase 3
0.8562 High Similarity NPD7411 Suspended
0.8533 High Similarity NPD7410 Clinical (unspecified phase)
0.8528 High Similarity NPD7808 Phase 3
0.8509 High Similarity NPD7054 Approved
0.8457 Intermediate Similarity NPD7472 Approved
0.8447 Intermediate Similarity NPD3818 Discontinued
0.8415 Intermediate Similarity NPD4338 Clinical (unspecified phase)
0.8397 Intermediate Similarity NPD5402 Approved
0.8344 Intermediate Similarity NPD4868 Clinical (unspecified phase)
0.8333 Intermediate Similarity NPD7819 Suspended
0.825 Intermediate Similarity NPD6959 Discontinued
0.8242 Intermediate Similarity NPD6559 Discontinued
0.8187 Intermediate Similarity NPD5494 Approved
0.8182 Intermediate Similarity NPD7993 Clinical (unspecified phase)
0.8146 Intermediate Similarity NPD3750 Approved
0.8146 Intermediate Similarity NPD4628 Phase 3
0.8138 Intermediate Similarity NPD6859 Clinical (unspecified phase)
0.8121 Intermediate Similarity NPD1551 Phase 2
0.8098 Intermediate Similarity NPD7852 Clinical (unspecified phase)
0.8079 Intermediate Similarity NPD2800 Approved
0.8079 Intermediate Similarity NPD7421 Clinical (unspecified phase)
0.8063 Intermediate Similarity NPD3749 Approved
0.8027 Intermediate Similarity NPD1613 Approved
0.8027 Intermediate Similarity NPD1612 Clinical (unspecified phase)
0.8014 Intermediate Similarity NPD1547 Clinical (unspecified phase)
0.8013 Intermediate Similarity NPD970 Clinical (unspecified phase)
0.8 Intermediate Similarity NPD7768 Phase 2
0.7952 Intermediate Similarity NPD5844 Phase 1
0.7908 Intermediate Similarity NPD1878 Clinical (unspecified phase)
0.7892 Intermediate Similarity NPD3751 Discontinued
0.7891 Intermediate Similarity NPD6798 Discontinued
0.7866 Intermediate Similarity NPD6232 Discontinued
0.7841 Intermediate Similarity NPD8090 Clinical (unspecified phase)
0.7834 Intermediate Similarity NPD920 Approved
0.7831 Intermediate Similarity NPD7473 Discontinued
0.7829 Intermediate Similarity NPD2344 Approved
0.7815 Intermediate Similarity NPD7033 Discontinued
0.7815 Intermediate Similarity NPD3748 Approved
0.7805 Intermediate Similarity NPD1247 Approved
0.78 Intermediate Similarity NPD6651 Approved
0.7793 Intermediate Similarity NPD1203 Approved
0.7791 Intermediate Similarity NPD919 Approved
0.7785 Intermediate Similarity NPD943 Approved
0.7765 Intermediate Similarity NPD4419 Clinical (unspecified phase)
0.7764 Intermediate Similarity NPD1465 Phase 2
0.7763 Intermediate Similarity NPD2935 Discontinued
0.7762 Intermediate Similarity NPD1610 Phase 2
0.7758 Intermediate Similarity NPD3787 Discontinued
0.7755 Intermediate Similarity NPD4908 Phase 1
0.7755 Intermediate Similarity NPD1529 Clinical (unspecified phase)
0.7738 Intermediate Similarity NPD7286 Phase 2
0.773 Intermediate Similarity NPD1548 Phase 1
0.7727 Intermediate Similarity NPD1243 Approved
0.7718 Intermediate Similarity NPD6233 Phase 2
0.7714 Intermediate Similarity NPD7879 Clinical (unspecified phase)
0.7711 Intermediate Similarity NPD3926 Phase 2
0.7707 Intermediate Similarity NPD642 Clinical (unspecified phase)
0.7707 Intermediate Similarity NPD2533 Approved
0.7707 Intermediate Similarity NPD2534 Approved
0.7707 Intermediate Similarity NPD2532 Approved
0.7692 Intermediate Similarity NPD643 Clinical (unspecified phase)
0.7687 Intermediate Similarity NPD1530 Clinical (unspecified phase)
0.7651 Intermediate Similarity NPD4907 Clinical (unspecified phase)
0.7651 Intermediate Similarity NPD2313 Discontinued
0.7647 Intermediate Similarity NPD6099 Approved
0.7647 Intermediate Similarity NPD6100 Approved
0.7647 Intermediate Similarity NPD5953 Discontinued
0.7635 Intermediate Similarity NPD6832 Phase 2
0.7628 Intermediate Similarity NPD2309 Approved
0.7627 Intermediate Similarity NPD4360 Phase 2
0.7627 Intermediate Similarity NPD4363 Phase 3
0.7616 Intermediate Similarity NPD1933 Approved
0.7616 Intermediate Similarity NPD6355 Discontinued
0.7613 Intermediate Similarity NPD1652 Phase 2
0.7586 Intermediate Similarity NPD9717 Approved
0.7584 Intermediate Similarity NPD3027 Phase 3
0.7582 Intermediate Similarity NPD2799 Discontinued
0.7533 Intermediate Similarity NPD3268 Approved
0.7531 Intermediate Similarity NPD7615 Clinical (unspecified phase)
0.7517 Intermediate Similarity NPD422 Phase 1
0.7516 Intermediate Similarity NPD2354 Approved
0.7516 Intermediate Similarity NPD3226 Approved
0.75 Intermediate Similarity NPD5124 Phase 1
0.75 Intermediate Similarity NPD5123 Clinical (unspecified phase)
0.75 Intermediate Similarity NPD230 Phase 1
0.7486 Intermediate Similarity NPD8434 Phase 2
0.7484 Intermediate Similarity NPD7004 Clinical (unspecified phase)
0.7484 Intermediate Similarity NPD4661 Approved
0.7484 Intermediate Similarity NPD4662 Approved
0.7484 Intermediate Similarity NPD2346 Discontinued
0.7468 Intermediate Similarity NPD1509 Clinical (unspecified phase)
0.7468 Intermediate Similarity NPD651 Clinical (unspecified phase)
0.7459 Intermediate Similarity NPD7584 Approved
0.7456 Intermediate Similarity NPD7784 Clinical (unspecified phase)
0.7436 Intermediate Similarity NPD2424 Discontinued
0.7432 Intermediate Similarity NPD2797 Approved
0.7418 Intermediate Similarity NPD6779 Approved
0.7418 Intermediate Similarity NPD6782 Approved
0.7418 Intermediate Similarity NPD6778 Approved
0.7418 Intermediate Similarity NPD6776 Approved
0.7418 Intermediate Similarity NPD6777 Approved
0.7418 Intermediate Similarity NPD6780 Approved
0.7418 Intermediate Similarity NPD6781 Approved
0.7414 Intermediate Similarity NPD8313 Approved
0.7414 Intermediate Similarity NPD8312 Approved
0.7405 Intermediate Similarity NPD6190 Approved
0.7405 Intermediate Similarity NPD3887 Approved
0.7396 Intermediate Similarity NPD7184 Clinical (unspecified phase)
0.7391 Intermediate Similarity NPD6980 Clinical (unspecified phase)
0.7389 Intermediate Similarity NPD2654 Approved
0.7386 Intermediate Similarity NPD447 Suspended
0.7386 Intermediate Similarity NPD1899 Clinical (unspecified phase)
0.7383 Intermediate Similarity NPD2798 Approved
0.7381 Intermediate Similarity NPD7199 Phase 2
0.7368 Intermediate Similarity NPD4062 Phase 3
0.7365 Intermediate Similarity NPD3225 Approved
0.7361 Intermediate Similarity NPD9545 Approved
0.7355 Intermediate Similarity NPD4308 Phase 3
0.7353 Intermediate Similarity NPD2403 Approved
0.7342 Intermediate Similarity NPD6398 Clinical (unspecified phase)
0.7333 Intermediate Similarity NPD8455 Phase 2
0.7315 Intermediate Similarity NPD3266 Approved
0.7315 Intermediate Similarity NPD3267 Approved
0.7312 Intermediate Similarity NPD7390 Discontinued
0.7297 Intermediate Similarity NPD7435 Discontinued
0.7293 Intermediate Similarity NPD4361 Phase 2
0.7293 Intermediate Similarity NPD4362 Clinical (unspecified phase)
0.7288 Intermediate Similarity NPD8150 Discontinued
0.7279 Intermediate Similarity NPD1091 Approved
0.7273 Intermediate Similarity NPD6844 Discontinued
0.7267 Intermediate Similarity NPD1019 Discontinued
0.7261 Intermediate Similarity NPD2355 Clinical (unspecified phase)
0.7261 Intermediate Similarity NPD2353 Approved
0.7254 Intermediate Similarity NPD1241 Discontinued
0.7251 Intermediate Similarity NPD4575 Clinical (unspecified phase)
0.7241 Intermediate Similarity NPD3823 Discontinued
0.7239 Intermediate Similarity NPD1653 Approved
0.7235 Intermediate Similarity NPD5710 Approved
0.7235 Intermediate Similarity NPD5711 Approved
0.7232 Intermediate Similarity NPD8055 Clinical (unspecified phase)
0.723 Intermediate Similarity NPD1608 Approved
0.723 Intermediate Similarity NPD3972 Approved
0.7228 Intermediate Similarity NPD7501 Clinical (unspecified phase)
0.7222 Intermediate Similarity NPD5049 Phase 3
0.7222 Intermediate Similarity NPD9493 Approved
0.7219 Intermediate Similarity NPD2861 Phase 2
0.7208 Intermediate Similarity NPD4060 Phase 1
0.7205 Intermediate Similarity NPD6143 Clinical (unspecified phase)
0.7204 Intermediate Similarity NPD7697 Approved
0.7204 Intermediate Similarity NPD7698 Approved
0.7204 Intermediate Similarity NPD7696 Phase 3
0.72 Intermediate Similarity NPD6104 Discontinued
0.7195 Intermediate Similarity NPD7458 Discontinued
0.7195 Intermediate Similarity NPD5808 Clinical (unspecified phase)
0.719 Intermediate Similarity NPD1296 Phase 2
0.7186 Intermediate Similarity NPD4288 Approved
0.7184 Intermediate Similarity NPD1729 Discontinued
0.7169 Intermediate Similarity NPD37 Approved
0.7166 Intermediate Similarity NPD7871 Phase 2
0.7166 Intermediate Similarity NPD7870 Phase 2
0.7161 Intermediate Similarity NPD4340 Discontinued
0.716 Intermediate Similarity NPD6234 Discontinued
0.7152 Intermediate Similarity NPD1471 Phase 3
0.7143 Intermediate Similarity NPD4966 Approved
0.7143 Intermediate Similarity NPD6534 Approved
0.7143 Intermediate Similarity NPD4965 Approved
0.7143 Intermediate Similarity NPD7701 Phase 2
0.7143 Intermediate Similarity NPD6535 Approved

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data