Structure

Physi-Chem Properties

Molecular Weight:  408.19
Volume:  435.51
LogP:  6.738
LogD:  3.695
LogS:  -3.22
# Rotatable Bonds:  5
TPSA:  86.99
# H-Bond Aceptor:  5
# H-Bond Donor:  3
# Rings:  3
# Heavy Atoms:  5

MedChem Properties

QED Drug-Likeness Score:  0.567
Synthetic Accessibility Score:  3.484
Fsp3:  0.32
Lipinski Rule-of-5:  Accepted
Pfizer Rule:  Accepted
GSK Rule:  Rejected
BMS Rule:  1
Golden Triangle Rule:  Accepted
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -4.779
MDCK Permeability:  1.5876652469160035e-05
Pgp-inhibitor:  0.537
Pgp-substrate:  0.351
Human Intestinal Absorption (HIA):  0.006
20% Bioavailability (F20%):  0.915
30% Bioavailability (F30%):  0.135

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.019
Plasma Protein Binding (PPB):  92.4857406616211%
Volume Distribution (VD):  1.758
Pgp-substrate:  7.476463317871094%

ADMET: Metabolism

CYP1A2-inhibitor:  0.216
CYP1A2-substrate:  0.223
CYP2C19-inhibitor:  0.951
CYP2C19-substrate:  0.089
CYP2C9-inhibitor:  0.917
CYP2C9-substrate:  0.964
CYP2D6-inhibitor:  0.735
CYP2D6-substrate:  0.369
CYP3A4-inhibitor:  0.344
CYP3A4-substrate:  0.16

ADMET: Excretion

Clearance (CL):  17.115
Half-life (T1/2):  0.138

ADMET: Toxicity

hERG Blockers:  0.037
Human Hepatotoxicity (H-HT):  0.869
Drug-inuced Liver Injury (DILI):  0.818
AMES Toxicity:  0.019
Rat Oral Acute Toxicity:  0.843
Maximum Recommended Daily Dose:  0.139
Skin Sensitization:  0.925
Carcinogencity:  0.146
Eye Corrosion:  0.003
Eye Irritation:  0.468
Respiratory Toxicity:  0.856

Download Data

Data Type Select
General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs  

  Natural Product: NPC265040

Natural Product ID:  NPC265040
Common Name*:   Lonchocarpol A
IUPAC Name:   (2S)-5,7-dihydroxy-2-(4-hydroxyphenyl)-6,8-bis(3-methylbut-2-enyl)-2,3-dihydrochromen-4-one
Synonyms:  
Standard InCHIKey:  HCNLDGTUMBOHKT-NRFANRHFSA-N
Standard InCHI:  InChI=1S/C25H28O5/c1-14(2)5-11-18-23(28)19(12-6-15(3)4)25-22(24(18)29)20(27)13-21(30-25)16-7-9-17(26)10-8-16/h5-10,21,26,28-29H,11-13H2,1-4H3/t21-/m0/s1
SMILES:  CC(=CCc1c2O[C@@H](CC(=O)c2c(c(c1O)CC=C(C)C)O)c1ccc(cc1)O)C
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL477969
PubChem CID:   124035
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000261] Phenylpropanoids and polyketides
      • [CHEMONTID:0000334] Flavonoids
        • [CHEMONTID:0000337] Flavans
          • [CHEMONTID:0003642] 8-prenylated flavans
            • [CHEMONTID:0003508] 8-prenylated flavanones

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO13281 Salvia hispanica Species Lamiaceae Eukaryota Seeds n.a. DOI[10.1002/ejlt.201100207]
NPO13281 Salvia hispanica Species Lamiaceae Eukaryota Seeds n.a. DOI[10.1007/s11746-010-1670-2]
NPO13281 Salvia hispanica Species Lamiaceae Eukaryota Seeds n.a. DOI[10.1016/j.foodcont.2016.09.002]
NPO13281 Salvia hispanica Species Lamiaceae Eukaryota Seeds n.a. DOI[10.1016/j.jfca.2010.08.006]
NPO13281 Salvia hispanica Species Lamiaceae Eukaryota Seeds n.a. DOI[10.1016/j.supflu.2010.06.003]
NPO13281 Salvia hispanica Species Lamiaceae Eukaryota Seeds n.a. DOI[10.1016/j.supflu.2010.12.007]
NPO13281 Salvia hispanica Species Lamiaceae Eukaryota Seeds n.a. DOI[10.1016/j.supflu.2016.02.010]
NPO13281 Salvia hispanica Species Lamiaceae Eukaryota Seeds n.a. DOI[10.1016/j.supflu.2018.06.017]
NPO3499 Macaranga conifera Species Euphorbiaceae Eukaryota n.a. leaf n.a. DOI[10.1016/S0031-9422(02)00378-3]
NPO13281 Salvia hispanica Species Lamiaceae Eukaryota Seeds n.a. DOI[10.12691/jfnr-2-5-9]
NPO13281 Salvia hispanica Species Lamiaceae Eukaryota Seeds n.a. DOI[10.5219/332]
NPO13879 Humulus lupulus Species Cannabaceae Eukaryota n.a. cone n.a. PMID[10336650]
NPO32704 monotes africanus Species Dipterocarpaceae Eukaryota n.a. n.a. n.a. PMID[11325248]
NPO3492 Negombata magnifica Species Latrunculiidae Eukaryota n.a. n.a. n.a. PMID[15217296]
NPO13879 Humulus lupulus Species Cannabaceae Eukaryota n.a. n.a. n.a. PMID[15679315]
NPO13879 Humulus lupulus Species Cannabaceae Eukaryota n.a. n.a. n.a. PMID[16252923]
NPO3492 Negombata magnifica Species Latrunculiidae Eukaryota n.a. n.a. n.a. PMID[16499319]
NPO13478 Scorzonera pseudodivaricata Species Asteraceae Eukaryota n.a. Mongolian n.a. PMID[17542634]
NPO13879 Humulus lupulus Species Cannabaceae Eukaryota n.a. cone n.a. PMID[17624889]
NPO3492 Negombata magnifica Species Latrunculiidae Eukaryota n.a. sand-covered bottom at -10 to -15 m at Hurghada, on the Egyptian Red Sea coast 2003-JUN PMID[18298079]
NPO13879 Humulus lupulus Species Cannabaceae Eukaryota n.a. n.a. n.a. PMID[18611049]
NPO13879 Humulus lupulus Species Cannabaceae Eukaryota n.a. n.a. n.a. PMID[18768384]
NPO3492 Negombata magnifica Species Latrunculiidae Eukaryota n.a. n.a. n.a. PMID[18942825]
NPO13879 Humulus lupulus Species Cannabaceae Eukaryota n.a. n.a. n.a. PMID[19476340]
NPO13281 Salvia hispanica Species Lamiaceae Eukaryota Seeds n.a. PMID[19628108]
NPO12855 Alkanna cappadocica Species Boraginaceae Eukaryota n.a. n.a. n.a. PMID[20405844]
NPO3499 Macaranga conifera Species Euphorbiaceae Eukaryota n.a. n.a. n.a. PMID[21275386]
NPO13879 Humulus lupulus Species Cannabaceae Eukaryota n.a. n.a. n.a. PMID[21912858]
NPO13879 Humulus lupulus Species Cannabaceae Eukaryota n.a. cone n.a. PMID[22111577]
NPO13879 Humulus lupulus Species Cannabaceae Eukaryota n.a. flower n.a. PMID[22166201]
NPO13281 Salvia hispanica Species Lamiaceae Eukaryota Seeds n.a. PMID[22538527]
NPO13879 Humulus lupulus Species Cannabaceae Eukaryota n.a. n.a. n.a. PMID[23790907]
NPO7715 Sophora tonkinensis Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[24345512]
NPO13281 Salvia hispanica Species Lamiaceae Eukaryota Seeds n.a. PMID[24811150]
NPO13879 Humulus lupulus Species Cannabaceae Eukaryota n.a. n.a. n.a. PMID[24948953]
NPO7715 Sophora tonkinensis Species Fabaceae Eukaryota root n.a. n.a. PMID[24959987]
NPO13879 Humulus lupulus Species Cannabaceae Eukaryota n.a. n.a. n.a. PMID[25564559]
NPO7715 Sophora tonkinensis Species Fabaceae Eukaryota Rhizomes Nanning, Guangxi Province, China 2012-Dec PMID[26132528]
NPO13281 Salvia hispanica Species Lamiaceae Eukaryota Seeds n.a. PMID[28274428]
NPO13879 Humulus lupulus Species Cannabaceae Eukaryota n.a. n.a. n.a. PMID[29154541]
NPO13281 Salvia hispanica Species Lamiaceae Eukaryota Seeds n.a. PMID[30236698]
NPO13281 Salvia hispanica Species Lamiaceae Eukaryota Seeds Guangzhou, China PMID[30563201]
NPO13281 Salvia hispanica Species Lamiaceae Eukaryota Seeds n.a. PMID[30583361]
NPO13281 Salvia hispanica Species Lamiaceae Eukaryota Seeds n.a. PMID[30599958]
NPO7715 Sophora tonkinensis Species Fabaceae Eukaryota Roots; Rhizomes n.a. n.a. PMID[30698432]
NPO13281 Salvia hispanica Species Lamiaceae Eukaryota Seeds n.a. PMID[31159190]
NPO13281 Salvia hispanica Species Lamiaceae Eukaryota Seeds n.a. PMID[31861466]
NPO13281 Salvia hispanica Species Lamiaceae Eukaryota n.a. n.a. Database[FooDB]
NPO13879 Humulus lupulus Species Cannabaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO3499 Macaranga conifera Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO2398 Millettia erythrocalyx Species Fabaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO28169 Aleurites cordata Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO2398 Millettia erythrocalyx Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28169 Aleurites cordata Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO3499 Macaranga conifera Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO13879 Humulus lupulus Species Cannabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO24390.1 Juniperus rigida var. conferta Varieties Cupressaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO1834 Atalantia racemosa Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO9313 Fritillaria ningguoensis Species Liliaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO7715 Sophora tonkinensis Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO9313 Fritillaria ningguoensis Species Liliaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO13879 Humulus lupulus Species Cannabaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO28169 Aleurites cordata Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO13879 Humulus lupulus Species Cannabaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO7715 Sophora tonkinensis Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO24248.1 Lactarius deliciosus var. deterrimus Varieties Russulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28857 Ixanthus viscosus Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8928 Pteris semipinnata Species Pteridaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27514 Glyphotaelius pellucidus Species Limnephilidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28169 Aleurites cordata Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9934 Mycobacterium leprae Species Mycobacteriaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO13671 Ononis vaginalis Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13478 Scorzonera pseudodivaricata Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10783 Syncarpia hillii Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13585 Rapanea lancifolia Species Primulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO252 Hoffmannia strigillosa Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2629 Cystoseira caespitosa Species Sargassaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1117 Hypholoma capnoides Species Strophariaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13030 Artemisia dentata Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14578 Prorocentrum micans Species Prorocentraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21830 Buddleja cordata Species Scrophulariaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13281 Salvia hispanica Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12855 Alkanna cappadocica Species Boraginaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5930 Crambe tatarica Species Brassicaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12700 Diospyros eriantha Species Ebenaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12196 Buphane fischeri n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO3499 Macaranga conifera Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13879 Humulus lupulus Species Cannabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1834 Atalantia racemosa Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6360 Xenoacremonium recifei Species Nectriaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11848 Lemaireocereus griseus Species Cactaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2398 Millettia erythrocalyx Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7715 Sophora tonkinensis Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3492 Negombata magnifica Species Latrunculiidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28367 Talauma arcabucoana Species Magnoliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24390.1 Juniperus rigida var. conferta Varieties Cupressaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9313 Fritillaria ningguoensis Species Liliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9366 Rosa transmorrisonensis Species Rosaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT137 Cell Line L1210 Mus musculus IC50 > 10.0 ug.mL-1 PMID[487873]
NPT137 Cell Line L1210 Mus musculus IC50 = 10.0 ug.mL-1 PMID[487873]
NPT113 Cell Line RAW264.7 Mus musculus Inhibition = 67.2 % PMID[487874]
NPT1114 Organism Human immunodeficiency virus Human immunodeficiency virus EC50 = 1.3 ug.mL-1 PMID[487872]
NPT1114 Organism Human immunodeficiency virus Human immunodeficiency virus IC50 = 2.7 ug.mL-1 PMID[487872]
NPT602 Organism Mycobacterium smegmatis Mycobacterium smegmatis MIC > 100.0 ug.mL-1 PMID[487873]
NPT1531 Organism Enterococcus faecium Enterococcus faecium MIC = 0.78 ug.mL-1 PMID[487873]
NPT16 Organism Staphylococcus aureus Staphylococcus aureus MIC = 0.78 ug.mL-1 PMID[487873]
NPT1230 Organism Bacillus megaterium Bacillus megaterium MIC = 1.0 ug.mL-1 PMID[487873]
NPT16 Organism Staphylococcus aureus Staphylococcus aureus MIC >= 100.0 ug.mL-1 PMID[487873]
NPT1531 Organism Enterococcus faecium Enterococcus faecium MIC >= 100.0 ug.mL-1 PMID[487873]
NPT602 Organism Mycobacterium smegmatis Mycobacterium smegmatis MIC >= 100.0 ug.mL-1 PMID[487873]
NPT27 Others Unspecified Activity >= 100.0 ug ml-1 PMID[487873]
NPT1230 Organism Bacillus megaterium Bacillus megaterium IC50 = 1.9 ug.mL-1 PMID[487873]
NPT1230 Organism Bacillus megaterium Bacillus megaterium IC50 = 3.9 ug.mL-1 PMID[487873]
NPT1230 Organism Bacillus megaterium Bacillus megaterium IC50 = 2.5 ug.mL-1 PMID[487873]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC265040 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC228504
1.0 High Similarity NPC161506
1.0 High Similarity NPC177354
1.0 High Similarity NPC32739
1.0 High Similarity NPC194432
1.0 High Similarity NPC227579
1.0 High Similarity NPC328164
1.0 High Similarity NPC223500
1.0 High Similarity NPC125855
1.0 High Similarity NPC40833
1.0 High Similarity NPC324436
1.0 High Similarity NPC166482
1.0 High Similarity NPC76372
1.0 High Similarity NPC10937
1.0 High Similarity NPC37496
1.0 High Similarity NPC1089
1.0 High Similarity NPC167624
1.0 High Similarity NPC182852
1.0 High Similarity NPC324134
1.0 High Similarity NPC220998
1.0 High Similarity NPC107572
1.0 High Similarity NPC296917
1.0 High Similarity NPC76338
1.0 High Similarity NPC148757
1.0 High Similarity NPC166934
1.0 High Similarity NPC78
1.0 High Similarity NPC306829
1.0 High Similarity NPC64915
1.0 High Similarity NPC66515
0.9927 High Similarity NPC316816
0.9927 High Similarity NPC221432
0.9927 High Similarity NPC478086
0.9927 High Similarity NPC175504
0.9927 High Similarity NPC77794
0.9927 High Similarity NPC68104
0.9927 High Similarity NPC223812
0.9927 High Similarity NPC257097
0.9927 High Similarity NPC278249
0.9927 High Similarity NPC91560
0.9927 High Similarity NPC107177
0.9927 High Similarity NPC85162
0.9927 High Similarity NPC75049
0.9927 High Similarity NPC164980
0.9927 High Similarity NPC149026
0.9927 High Similarity NPC214166
0.9927 High Similarity NPC150408
0.9927 High Similarity NPC39329
0.9927 High Similarity NPC169591
0.9927 High Similarity NPC185276
0.9927 High Similarity NPC143896
0.9927 High Similarity NPC125894
0.9927 High Similarity NPC310130
0.9927 High Similarity NPC81697
0.9926 High Similarity NPC258630
0.9926 High Similarity NPC312391
0.9926 High Similarity NPC324386
0.9926 High Similarity NPC17170
0.9926 High Similarity NPC248372
0.9926 High Similarity NPC110038
0.9926 High Similarity NPC96408
0.9926 High Similarity NPC213322
0.9926 High Similarity NPC166689
0.9926 High Similarity NPC156190
0.9926 High Similarity NPC4743
0.9926 High Similarity NPC279650
0.9855 High Similarity NPC197252
0.9855 High Similarity NPC235217
0.9855 High Similarity NPC473014
0.9855 High Similarity NPC473015
0.9855 High Similarity NPC236766
0.9855 High Similarity NPC473013
0.9855 High Similarity NPC209040
0.9855 High Similarity NPC131568
0.9855 High Similarity NPC131579
0.9853 High Similarity NPC188243
0.9853 High Similarity NPC110228
0.9853 High Similarity NPC6407
0.9784 High Similarity NPC127059
0.9784 High Similarity NPC285630
0.9784 High Similarity NPC142405
0.9784 High Similarity NPC20488
0.9784 High Similarity NPC67805
0.9784 High Similarity NPC301276
0.9784 High Similarity NPC176229
0.9784 High Similarity NPC109183
0.9784 High Similarity NPC88964
0.9784 High Similarity NPC83357
0.9784 High Similarity NPC470647
0.9784 High Similarity NPC473078
0.9784 High Similarity NPC54577
0.9784 High Similarity NPC470133
0.9784 High Similarity NPC111786
0.9784 High Similarity NPC470131
0.9784 High Similarity NPC214774
0.9784 High Similarity NPC246948
0.9784 High Similarity NPC470132
0.9784 High Similarity NPC312973
0.9784 High Similarity NPC267375
0.9784 High Similarity NPC195621
0.9784 High Similarity NPC475052
0.9784 High Similarity NPC472629
0.9784 High Similarity NPC470134
0.9781 High Similarity NPC3188
0.9779 High Similarity NPC225153
0.9779 High Similarity NPC20709
0.9779 High Similarity NPC140890
0.9779 High Similarity NPC265871
0.9779 High Similarity NPC310135
0.9779 High Similarity NPC150648
0.9779 High Similarity NPC329203
0.9779 High Similarity NPC274784
0.9779 High Similarity NPC222342
0.9714 High Similarity NPC300988
0.9714 High Similarity NPC10990
0.9714 High Similarity NPC23728
0.9714 High Similarity NPC283234
0.9714 High Similarity NPC472627
0.9714 High Similarity NPC110303
0.9714 High Similarity NPC296998
0.9714 High Similarity NPC473077
0.9712 High Similarity NPC319752
0.9712 High Similarity NPC124780
0.9712 High Similarity NPC271288
0.9712 High Similarity NPC87486
0.9712 High Similarity NPC470890
0.9712 High Similarity NPC470136
0.9712 High Similarity NPC470135
0.9712 High Similarity NPC39045
0.971 High Similarity NPC147145
0.9708 High Similarity NPC159275
0.9708 High Similarity NPC241100
0.9708 High Similarity NPC69769
0.9708 High Similarity NPC129853
0.9708 High Similarity NPC76445
0.9708 High Similarity NPC284550
0.9645 High Similarity NPC132592
0.9645 High Similarity NPC161191
0.9645 High Similarity NPC160821
0.9643 High Similarity NPC215885
0.9643 High Similarity NPC187282
0.9643 High Similarity NPC474161
0.9643 High Similarity NPC476088
0.9643 High Similarity NPC2416
0.9643 High Similarity NPC476153
0.9643 High Similarity NPC290133
0.9643 High Similarity NPC228779
0.9643 High Similarity NPC24136
0.964 High Similarity NPC18585
0.964 High Similarity NPC106985
0.964 High Similarity NPC166138
0.964 High Similarity NPC471621
0.9638 High Similarity NPC110969
0.9638 High Similarity NPC282300
0.9635 High Similarity NPC18260
0.9635 High Similarity NPC78913
0.9635 High Similarity NPC220062
0.9635 High Similarity NPC217186
0.9635 High Similarity NPC55018
0.9635 High Similarity NPC301217
0.9635 High Similarity NPC303633
0.9635 High Similarity NPC53181
0.9635 High Similarity NPC96565
0.9635 High Similarity NPC216978
0.9632 High Similarity NPC12296
0.9632 High Similarity NPC295261
0.9632 High Similarity NPC287246
0.9632 High Similarity NPC107586
0.9632 High Similarity NPC296490
0.9632 High Similarity NPC13768
0.9632 High Similarity NPC32441
0.9632 High Similarity NPC79943
0.9632 High Similarity NPC243083
0.9632 High Similarity NPC259685
0.9577 High Similarity NPC3642
0.9577 High Similarity NPC473016
0.9577 High Similarity NPC472628
0.9574 High Similarity NPC308200
0.9571 High Similarity NPC271590
0.9571 High Similarity NPC110776
0.9571 High Similarity NPC224714
0.9568 High Similarity NPC226636
0.9568 High Similarity NPC11561
0.9568 High Similarity NPC144499
0.9568 High Similarity NPC266725
0.9565 High Similarity NPC172986
0.9565 High Similarity NPC261227
0.9565 High Similarity NPC270883
0.9565 High Similarity NPC150522
0.9562 High Similarity NPC99333
0.9562 High Similarity NPC329225
0.9562 High Similarity NPC472460
0.9562 High Similarity NPC118813
0.9562 High Similarity NPC201395
0.9562 High Similarity NPC188947
0.9562 High Similarity NPC280284
0.9562 High Similarity NPC124269
0.9562 High Similarity NPC147686
0.951 High Similarity NPC472633
0.9507 High Similarity NPC145467
0.9507 High Similarity NPC122894

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC265040 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.9632 High Similarity NPD1552 Clinical (unspecified phase)
0.9632 High Similarity NPD1550 Clinical (unspecified phase)
0.9562 High Similarity NPD1549 Phase 2
0.9433 High Similarity NPD4378 Clinical (unspecified phase)
0.9315 High Similarity NPD2393 Clinical (unspecified phase)
0.9252 High Similarity NPD8443 Clinical (unspecified phase)
0.9178 High Similarity NPD7411 Suspended
0.9161 High Similarity NPD7410 Clinical (unspecified phase)
0.9137 High Similarity NPD2796 Approved
0.9128 High Similarity NPD7075 Discontinued
0.911 High Similarity NPD4380 Phase 2
0.9065 High Similarity NPD1510 Phase 2
0.9054 High Similarity NPD7096 Clinical (unspecified phase)
0.9051 High Similarity NPD1240 Approved
0.8986 High Similarity NPD1934 Approved
0.8926 High Similarity NPD7819 Suspended
0.8921 High Similarity NPD1607 Approved
0.8859 High Similarity NPD6801 Discontinued
0.875 High Similarity NPD4381 Clinical (unspecified phase)
0.8701 High Similarity NPD6959 Discontinued
0.8699 High Similarity NPD6799 Approved
0.8681 High Similarity NPD7421 Clinical (unspecified phase)
0.8654 High Similarity NPD7852 Clinical (unspecified phase)
0.8608 High Similarity NPD7804 Clinical (unspecified phase)
0.8571 High Similarity NPD1511 Approved
0.8562 High Similarity NPD7768 Phase 2
0.8553 High Similarity NPD2801 Approved
0.8535 High Similarity NPD6166 Phase 2
0.8535 High Similarity NPD6168 Clinical (unspecified phase)
0.8535 High Similarity NPD6167 Clinical (unspecified phase)
0.85 High Similarity NPD6859 Clinical (unspecified phase)
0.8477 Intermediate Similarity NPD6599 Discontinued
0.8456 Intermediate Similarity NPD1512 Approved
0.8442 Intermediate Similarity NPD3882 Suspended
0.8425 Intermediate Similarity NPD2800 Approved
0.8397 Intermediate Similarity NPD5494 Approved
0.8392 Intermediate Similarity NPD6651 Approved
0.8367 Intermediate Similarity NPD3750 Approved
0.8345 Intermediate Similarity NPD1551 Phase 2
0.8323 Intermediate Similarity NPD7074 Phase 3
0.8278 Intermediate Similarity NPD5403 Approved
0.8269 Intermediate Similarity NPD3749 Approved
0.8261 Intermediate Similarity NPD7054 Approved
0.8258 Intermediate Similarity NPD3817 Phase 2
0.8248 Intermediate Similarity NPD1547 Clinical (unspecified phase)
0.8239 Intermediate Similarity NPD4907 Clinical (unspecified phase)
0.8231 Intermediate Similarity NPD970 Clinical (unspecified phase)
0.8221 Intermediate Similarity NPD6559 Discontinued
0.8219 Intermediate Similarity NPD2935 Discontinued
0.821 Intermediate Similarity NPD7472 Approved
0.8205 Intermediate Similarity NPD4868 Clinical (unspecified phase)
0.8199 Intermediate Similarity NPD3818 Discontinued
0.8176 Intermediate Similarity NPD1243 Approved
0.8171 Intermediate Similarity NPD4419 Clinical (unspecified phase)
0.816 Intermediate Similarity NPD6797 Phase 2
0.816 Intermediate Similarity NPD5953 Discontinued
0.8158 Intermediate Similarity NPD920 Approved
0.8151 Intermediate Similarity NPD2799 Discontinued
0.8148 Intermediate Similarity NPD7286 Phase 2
0.8146 Intermediate Similarity NPD2532 Approved
0.8146 Intermediate Similarity NPD5401 Approved
0.8146 Intermediate Similarity NPD2534 Approved
0.8146 Intermediate Similarity NPD2533 Approved
0.8133 Intermediate Similarity NPD643 Clinical (unspecified phase)
0.811 Intermediate Similarity NPD7251 Discontinued
0.8099 Intermediate Similarity NPD4908 Phase 1
0.8063 Intermediate Similarity NPD6232 Discontinued
0.8061 Intermediate Similarity NPD7808 Phase 3
0.8041 Intermediate Similarity NPD2344 Approved
0.8037 Intermediate Similarity NPD5844 Phase 1
0.8027 Intermediate Similarity NPD7033 Discontinued
0.8027 Intermediate Similarity NPD3748 Approved
0.8026 Intermediate Similarity NPD642 Clinical (unspecified phase)
0.8025 Intermediate Similarity NPD7473 Discontinued
0.8014 Intermediate Similarity NPD1203 Approved
0.8 Intermediate Similarity NPD1878 Clinical (unspecified phase)
0.8 Intermediate Similarity NPD4628 Phase 3
0.7986 Intermediate Similarity NPD1610 Phase 2
0.7986 Intermediate Similarity NPD2313 Discontinued
0.7973 Intermediate Similarity NPD6100 Approved
0.7973 Intermediate Similarity NPD6099 Approved
0.7972 Intermediate Similarity NPD6832 Phase 2
0.7956 Intermediate Similarity NPD1548 Phase 1
0.7952 Intermediate Similarity NPD4338 Clinical (unspecified phase)
0.7949 Intermediate Similarity NPD7615 Clinical (unspecified phase)
0.7945 Intermediate Similarity NPD5124 Phase 1
0.7945 Intermediate Similarity NPD5123 Clinical (unspecified phase)
0.7911 Intermediate Similarity NPD5402 Approved
0.7907 Intermediate Similarity NPD4363 Phase 3
0.7907 Intermediate Similarity NPD4360 Phase 2
0.7905 Intermediate Similarity NPD1509 Clinical (unspecified phase)
0.7862 Intermediate Similarity NPD3268 Approved
0.7829 Intermediate Similarity NPD2309 Approved
0.7821 Intermediate Similarity NPD3226 Approved
0.7801 Intermediate Similarity NPD9717 Approved
0.78 Intermediate Similarity NPD2346 Discontinued
0.7764 Intermediate Similarity NPD919 Approved
0.7763 Intermediate Similarity NPD6398 Clinical (unspecified phase)
0.7762 Intermediate Similarity NPD2797 Approved
0.7755 Intermediate Similarity NPD943 Approved
0.773 Intermediate Similarity NPD422 Phase 1
0.7727 Intermediate Similarity NPD7390 Discontinued
0.7725 Intermediate Similarity NPD7993 Clinical (unspecified phase)
0.7714 Intermediate Similarity NPD8090 Clinical (unspecified phase)
0.7708 Intermediate Similarity NPD2798 Approved
0.7697 Intermediate Similarity NPD2654 Approved
0.7677 Intermediate Similarity NPD7004 Clinical (unspecified phase)
0.7671 Intermediate Similarity NPD4625 Phase 3
0.7669 Intermediate Similarity NPD1247 Approved
0.7665 Intermediate Similarity NPD1729 Discontinued
0.7657 Intermediate Similarity NPD4361 Phase 2
0.7657 Intermediate Similarity NPD4362 Clinical (unspecified phase)
0.7635 Intermediate Similarity NPD1612 Clinical (unspecified phase)
0.7635 Intermediate Similarity NPD1613 Approved
0.7622 Intermediate Similarity NPD5711 Approved
0.7622 Intermediate Similarity NPD5710 Approved
0.7619 Intermediate Similarity NPD6798 Discontinued
0.7595 Intermediate Similarity NPD5808 Clinical (unspecified phase)
0.7584 Intermediate Similarity NPD1933 Approved
0.7576 Intermediate Similarity NPD3926 Phase 2
0.7571 Intermediate Similarity NPD9545 Approved
0.7569 Intermediate Similarity NPD3225 Approved
0.7552 Intermediate Similarity NPD3972 Approved
0.755 Intermediate Similarity NPD4308 Phase 3
0.7517 Intermediate Similarity NPD3267 Approved
0.7517 Intermediate Similarity NPD3266 Approved
0.7516 Intermediate Similarity NPD1465 Phase 2
0.75 Intermediate Similarity NPD5890 Approved
0.75 Intermediate Similarity NPD5889 Approved
0.7486 Intermediate Similarity NPD7879 Clinical (unspecified phase)
0.7486 Intermediate Similarity NPD7501 Clinical (unspecified phase)
0.7484 Intermediate Similarity NPD7458 Discontinued
0.7483 Intermediate Similarity NPD1529 Clinical (unspecified phase)
0.7471 Intermediate Similarity NPD6104 Discontinued
0.7468 Intermediate Similarity NPD6980 Clinical (unspecified phase)
0.7467 Intermediate Similarity NPD1899 Clinical (unspecified phase)
0.7464 Intermediate Similarity NPD1241 Discontinued
0.7432 Intermediate Similarity NPD7584 Approved
0.7431 Intermediate Similarity NPD1608 Approved
0.7429 Intermediate Similarity NPD9493 Approved
0.7415 Intermediate Similarity NPD2861 Phase 2
0.7415 Intermediate Similarity NPD1530 Clinical (unspecified phase)
0.741 Intermediate Similarity NPD7229 Phase 3
0.7403 Intermediate Similarity NPD2424 Discontinued
0.7389 Intermediate Similarity NPD7212 Phase 2
0.7389 Intermediate Similarity NPD7213 Phase 3
0.7384 Intermediate Similarity NPD8313 Approved
0.7384 Intermediate Similarity NPD8312 Approved
0.7383 Intermediate Similarity NPD1296 Phase 2
0.7383 Intermediate Similarity NPD6410 Clinical (unspecified phase)
0.7379 Intermediate Similarity NPD4749 Approved
0.7362 Intermediate Similarity NPD4288 Approved
0.7361 Intermediate Similarity NPD1201 Approved
0.7355 Intermediate Similarity NPD1652 Phase 2
0.7351 Intermediate Similarity NPD230 Phase 1
0.7351 Intermediate Similarity NPD6355 Discontinued
0.7347 Intermediate Similarity NPD1019 Discontinued
0.7346 Intermediate Similarity NPD6844 Discontinued
0.7342 Intermediate Similarity NPD4661 Approved
0.7342 Intermediate Similarity NPD4662 Approved
0.7338 Intermediate Similarity NPD2343 Clinical (unspecified phase)
0.7337 Intermediate Similarity NPD7893 Clinical (unspecified phase)
0.7337 Intermediate Similarity NPD3751 Discontinued
0.7333 Intermediate Similarity NPD6233 Phase 2
0.7329 Intermediate Similarity NPD6585 Discontinued
0.7321 Intermediate Similarity NPD7784 Clinical (unspecified phase)
0.7315 Intermediate Similarity NPD3027 Phase 3
0.7308 Intermediate Similarity NPD7003 Approved
0.7305 Intermediate Similarity NPD3787 Discontinued
0.7301 Intermediate Similarity NPD8455 Phase 2
0.7285 Intermediate Similarity NPD3142 Approved
0.7285 Intermediate Similarity NPD4307 Phase 2
0.7285 Intermediate Similarity NPD3140 Approved
0.7279 Intermediate Similarity NPD1470 Approved
0.7279 Intermediate Similarity NPD1164 Approved
0.7278 Intermediate Similarity NPD6143 Clinical (unspecified phase)
0.7273 Intermediate Similarity NPD5406 Approved
0.7273 Intermediate Similarity NPD5404 Approved
0.7273 Intermediate Similarity NPD5405 Approved
0.7273 Intermediate Similarity NPD5408 Approved
0.7273 Intermediate Similarity NPD4476 Approved
0.7273 Intermediate Similarity NPD4477 Approved
0.7273 Intermediate Similarity NPD4287 Approved
0.7267 Intermediate Similarity NPD411 Approved
0.7267 Intermediate Similarity NPD3764 Approved
0.7261 Intermediate Similarity NPD3887 Approved
0.7256 Intermediate Similarity NPD2296 Approved
0.7246 Intermediate Similarity NPD7199 Phase 2
0.7239 Intermediate Similarity NPD7577 Discontinued
0.7237 Intermediate Similarity NPD447 Suspended
0.7233 Intermediate Similarity NPD7447 Phase 1
0.7226 Intermediate Similarity NPD6004 Phase 3
0.7226 Intermediate Similarity NPD6002 Phase 3
0.7226 Intermediate Similarity NPD6006 Clinical (unspecified phase)
0.7226 Intermediate Similarity NPD6005 Phase 3
0.7226 Intermediate Similarity NPD6003 Clinical (unspecified phase)
0.7226 Intermediate Similarity NPD1471 Phase 3
0.7222 Intermediate Similarity NPD17 Approved
0.7209 Intermediate Similarity NPD3823 Discontinued
0.7203 Intermediate Similarity NPD1894 Discontinued

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data