Structure

Physi-Chem Properties

Molecular Weight:  355.14
Volume:  356.743
LogP:  2.18
LogD:  2.507
LogS:  -3.535
# Rotatable Bonds:  2
TPSA:  66.02
# H-Bond Aceptor:  6
# H-Bond Donor:  1
# Rings:  4
# Heavy Atoms:  6

MedChem Properties

QED Drug-Likeness Score:  0.893
Synthetic Accessibility Score:  3.112
Fsp3:  0.35
Lipinski Rule-of-5:  Accepted
Pfizer Rule:  Accepted
GSK Rule:  Accepted
BMS Rule:  0
Golden Triangle Rule:  Accepted
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -4.951
MDCK Permeability:  2.2409314624383114e-05
Pgp-inhibitor:  0.028
Pgp-substrate:  0.228
Human Intestinal Absorption (HIA):  0.002
20% Bioavailability (F20%):  0.002
30% Bioavailability (F30%):  0.004

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.964
Plasma Protein Binding (PPB):  61.36556625366211%
Volume Distribution (VD):  2.062
Pgp-substrate:  9.245800971984863%

ADMET: Metabolism

CYP1A2-inhibitor:  0.928
CYP1A2-substrate:  0.748
CYP2C19-inhibitor:  0.719
CYP2C19-substrate:  0.843
CYP2C9-inhibitor:  0.034
CYP2C9-substrate:  0.802
CYP2D6-inhibitor:  0.969
CYP2D6-substrate:  0.916
CYP3A4-inhibitor:  0.933
CYP3A4-substrate:  0.701

ADMET: Excretion

Clearance (CL):  10.189
Half-life (T1/2):  0.468

ADMET: Toxicity

hERG Blockers:  0.496
Human Hepatotoxicity (H-HT):  0.69
Drug-inuced Liver Injury (DILI):  0.847
AMES Toxicity:  0.133
Rat Oral Acute Toxicity:  0.413
Maximum Recommended Daily Dose:  0.848
Skin Sensitization:  0.268
Carcinogencity:  0.156
Eye Corrosion:  0.003
Eye Irritation:  0.007
Respiratory Toxicity:  0.776

Download Data

Data Type Select
General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs  

  Natural Product: NPC121400

Natural Product ID:  NPC121400
Common Name*:   WIILRXFCYJMJTC-UHFFFAOYSA-N
IUPAC Name:   n.a.
Synonyms:  
Standard InCHIKey:  WIILRXFCYJMJTC-UHFFFAOYSA-N
Standard InCHI:  InChI=1S/C20H21NO5/c1-23-18-8-13-5-6-21-10-15-12(3-4-17-20(15)26-11-25-17)7-16(22)14(13)9-19(18)24-2/h3-4,8-9,21H,5-7,10-11H2,1-2H3
SMILES:  COc1cc2CCNCc3c(ccc4c3OCO4)CC(=O)c2cc1OC
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL2000522
PubChem CID:   371229
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000002] Organoheterocyclic compounds
      • [CHEMONTID:0000296] Benzodioxoles

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO9498 Papaver somniferum Species Papaveraceae Eukaryota n.a. n.a. n.a. PMID[15019787]
NPO21435 Thalictrum faberi Species Ranunculaceae Eukaryota Roots n.a. n.a. PMID[19299148]
NPO3504 Argemone mexicana Species Papaveraceae Eukaryota n.a. n.a. n.a. PMID[21094631]
NPO9498 Papaver somniferum Species Papaveraceae Eukaryota n.a. n.a. n.a. PMID[22029392]
NPO14103 Fumaria parviflora Species Papaveraceae Eukaryota n.a. n.a. n.a. PMID[22029392]
NPO9498 Papaver somniferum Species Papaveraceae Eukaryota n.a. n.a. n.a. PMID[23517479]
NPO21435 Thalictrum faberi Species Ranunculaceae Eukaryota n.a. n.a. n.a. PMID[7528786]
NPO9498 Papaver somniferum Species Papaveraceae Eukaryota Latex Exudate n.a. n.a. Database[FooDB]
NPO9498 Papaver somniferum Species Papaveraceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO9498 Papaver somniferum Species Papaveraceae Eukaryota n.a. n.a. Database[FooDB]
NPO9498 Papaver somniferum Species Papaveraceae Eukaryota n.a. n.a. Database[FooDB]
NPO13297 Thalictrum atriplex Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO29868 Dicentra spectabilis Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO21435 Thalictrum faberi Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO15847 Thalictrum glandulosissimum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO2114.1 Thalictrum minus var. hypoleucum Varieties Ranunculaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO11457 Chelidonium majus Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO30288 Thalictrum thunbergii Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO28372 Corydalis pallida Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO3504 Argemone mexicana Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO16640 Thalictrum petaloideum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO25761 Thalictrum microgynum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO22043 Hylomecon japonica Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO14103 Fumaria parviflora Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO13637 Thalictrum foliolosum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO21451 Thalictrum simplex Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO9498 Papaver somniferum Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO10246 Fumaria officinalis Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO22043 Hylomecon japonica Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO17796 Lamprocapnos spectabilis Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO10246 Fumaria officinalis Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO9498 Papaver somniferum Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO21435 Thalictrum faberi Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO21451 Thalictrum simplex Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO3504 Argemone mexicana Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO14103 Fumaria parviflora Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO11457 Chelidonium majus Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28372 Corydalis pallida Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO15847 Thalictrum glandulosissimum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO2114.1 Thalictrum minus var. hypoleucum Varieties Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO13297 Thalictrum atriplex Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO13637 Thalictrum foliolosum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO16640 Thalictrum petaloideum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO25761 Thalictrum microgynum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO14103 Fumaria parviflora Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO3504 Argemone mexicana Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO9498 Papaver somniferum Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO13637 Thalictrum foliolosum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO29868 Dicentra spectabilis Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO22043 Hylomecon japonica Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO28372 Corydalis pallida Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO11457 Chelidonium majus Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO30288 Thalictrum thunbergii Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO11457 Chelidonium majus Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO9498 Papaver somniferum Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO25761 Thalictrum microgynum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14103 Fumaria parviflora Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10246 Fumaria officinalis Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21451 Thalictrum simplex Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13637 Thalictrum foliolosum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3504 Argemone mexicana Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17796 Lamprocapnos spectabilis Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22043 Hylomecon japonica Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2114.1 Thalictrum minus var. hypoleucum Varieties Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9498 Papaver somniferum Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28372 Corydalis pallida Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT368 Cell Line SN12C Homo sapiens GI50 n.a. 100000.0 nM PMID[458930]
NPT370 Cell Line NCI-H23 Homo sapiens GI50 n.a. 100000.0 nM PMID[458930]
NPT369 Cell Line ACHN Homo sapiens GI50 n.a. 100000.0 nM PMID[458930]
NPT371 Cell Line UO-31 Homo sapiens GI50 n.a. 100000.0 nM PMID[458930]
NPT374 Cell Line SF-539 Homo sapiens GI50 n.a. 100000.0 nM PMID[458930]
NPT373 Cell Line SK-MEL-5 Homo sapiens GI50 n.a. 100000.0 nM PMID[458930]
NPT375 Cell Line Malme-3M Homo sapiens GI50 n.a. 100000.0 nM PMID[458930]
NPT111 Cell Line K562 Homo sapiens GI50 n.a. 100000.0 nM PMID[458930]
NPT376 Cell Line A498 Homo sapiens GI50 n.a. 100000.0 nM PMID[458930]
NPT377 Cell Line OVCAR-3 Homo sapiens GI50 n.a. 100000.0 nM PMID[458930]
NPT112 Cell Line MOLT-4 Homo sapiens GI50 n.a. 100000.0 nM PMID[458930]
NPT379 Cell Line HOP-62 Homo sapiens GI50 n.a. 100000.0 nM PMID[458930]
NPT380 Cell Line U-251 Homo sapiens GI50 n.a. 100000.0 nM PMID[458930]
NPT382 Cell Line OVCAR-5 Homo sapiens GI50 n.a. 100000.0 nM PMID[458930]
NPT381 Cell Line OVCAR-8 Homo sapiens GI50 n.a. 100000.0 nM PMID[458930]
NPT383 Cell Line SNB-19 Homo sapiens GI50 n.a. 100000.0 nM PMID[458930]
NPT384 Cell Line TK-10 Homo sapiens GI50 n.a. 100000.0 nM PMID[458930]
NPT573 Cell Line M19-MEL Homo sapiens GI50 n.a. 100000.0 nM PMID[458930]
NPT323 Cell Line SW-620 Homo sapiens GI50 n.a. 100000.0 nM PMID[458930]
NPT386 Cell Line KM12 Homo sapiens GI50 n.a. 100000.0 nM PMID[458930]
NPT455 Cell Line NCI-H522 Homo sapiens GI50 n.a. 100000.0 nM PMID[458930]
NPT574 Cell Line XF498 Homo sapiens GI50 n.a. 100000.0 nM PMID[458930]
NPT387 Cell Line M14 Homo sapiens GI50 n.a. 100000.0 nM PMID[458930]
NPT389 Cell Line RPMI-8226 Homo sapiens GI50 n.a. 100000.0 nM PMID[458930]
NPT456 Cell Line OVCAR-4 Homo sapiens GI50 n.a. 100000.0 nM PMID[458930]
NPT147 Cell Line SK-MEL-2 Homo sapiens GI50 n.a. 100000.0 nM PMID[458930]
NPT575 Cell Line KM-20L2 Homo sapiens GI50 n.a. 100000.0 nM PMID[458930]
NPT81 Cell Line A549 Homo sapiens GI50 n.a. 100000.0 nM PMID[458930]
NPT392 Cell Line SNB-75 Homo sapiens GI50 n.a. 100000.0 nM PMID[458930]
NPT391 Cell Line HCC 2998 Homo sapiens GI50 n.a. 100000.0 nM PMID[458930]
NPT148 Cell Line HCT-15 Homo sapiens GI50 n.a. 100000.0 nM PMID[458930]
NPT393 Cell Line HCT-116 Homo sapiens GI50 n.a. 100000.0 nM PMID[458930]
NPT395 Cell Line SF-268 Homo sapiens GI50 n.a. 100000.0 nM PMID[458930]
NPT394 Cell Line EKVX Homo sapiens GI50 n.a. 100000.0 nM PMID[458930]
NPT731 Cell Line LXFL 529 Homo sapiens GI50 n.a. 100000.0 nM PMID[458930]
NPT576 Cell Line DMS-114 Homo sapiens GI50 n.a. 100000.0 nM PMID[458930]
NPT146 Cell Line SK-OV-3 Homo sapiens GI50 n.a. 100000.0 nM PMID[458930]
NPT397 Cell Line NCI-H460 Homo sapiens GI50 n.a. 100000.0 nM PMID[458930]
NPT398 Cell Line UACC-62 Homo sapiens GI50 n.a. 100000.0 nM PMID[458930]
NPT308 Cell Line CAKI-1 Homo sapiens GI50 n.a. 100000.0 nM PMID[458930]
NPT399 Cell Line SF-295 Homo sapiens GI50 n.a. 100000.0 nM PMID[458930]
NPT458 Cell Line IGROV-1 Homo sapiens GI50 n.a. 100000.0 nM PMID[458930]
NPT578 Cell Line SNB-78 Homo sapiens GI50 n.a. 100000.0 nM PMID[458930]
NPT403 Cell Line UACC-257 Homo sapiens GI50 n.a. 100000.0 nM PMID[458930]
NPT401 Cell Line 786-0 Homo sapiens GI50 n.a. 100000.0 nM PMID[458930]
NPT579 Cell Line DLD-1 Homo sapiens GI50 n.a. 100000.0 nM PMID[458930]
NPT404 Cell Line CCRF-CEM Homo sapiens GI50 n.a. 100000.0 nM PMID[458930]
NPT139 Cell Line HT-29 Homo sapiens GI50 n.a. 100000.0 nM PMID[458930]
NPT170 Cell Line SK-MEL-28 Homo sapiens GI50 n.a. 100000.0 nM PMID[458930]
NPT407 Cell Line COLO 205 Homo sapiens GI50 n.a. 100000.0 nM PMID[458930]
NPT732 Cell Line HOP-18 Homo sapiens GI50 n.a. 100000.0 nM PMID[458930]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC121400 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.963 High Similarity NPC67978
0.963 High Similarity NPC303581
0.9512 High Similarity NPC308267
0.9268 High Similarity NPC86469
0.9198 High Similarity NPC153631
0.85 High Similarity NPC469816
0.85 High Similarity NPC469815
0.8457 Intermediate Similarity NPC27887
0.8352 Intermediate Similarity NPC125924
0.8324 Intermediate Similarity NPC477259
0.8324 Intermediate Similarity NPC169387
0.8212 Intermediate Similarity NPC116007
0.8133 Intermediate Similarity NPC470088
0.8118 Intermediate Similarity NPC207239
0.8087 Intermediate Similarity NPC226708
0.8054 Intermediate Similarity NPC477258
0.8047 Intermediate Similarity NPC470708
0.8036 Intermediate Similarity NPC119669
0.8011 Intermediate Similarity NPC83511
0.8011 Intermediate Similarity NPC24228
0.8 Intermediate Similarity NPC469978
0.7978 Intermediate Similarity NPC207721
0.7967 Intermediate Similarity NPC18306
0.7933 Intermediate Similarity NPC222524
0.7927 Intermediate Similarity NPC46990
0.7921 Intermediate Similarity NPC4669
0.7895 Intermediate Similarity NPC138487
0.7895 Intermediate Similarity NPC216459
0.7895 Intermediate Similarity NPC41178
0.7892 Intermediate Similarity NPC63152
0.7872 Intermediate Similarity NPC73020
0.7872 Intermediate Similarity NPC71124
0.7872 Intermediate Similarity NPC124302
0.7872 Intermediate Similarity NPC14622
0.7872 Intermediate Similarity NPC46744
0.7872 Intermediate Similarity NPC215098
0.7872 Intermediate Similarity NPC70290
0.7857 Intermediate Similarity NPC475959
0.7849 Intermediate Similarity NPC146288
0.7841 Intermediate Similarity NPC304659
0.7841 Intermediate Similarity NPC86144
0.7831 Intermediate Similarity NPC125134
0.7831 Intermediate Similarity NPC137920
0.7831 Intermediate Similarity NPC86455
0.7812 Intermediate Similarity NPC268077
0.7801 Intermediate Similarity NPC119818
0.7801 Intermediate Similarity NPC328700
0.7801 Intermediate Similarity NPC202771
0.7801 Intermediate Similarity NPC2173
0.7791 Intermediate Similarity NPC93593
0.7789 Intermediate Similarity NPC120671
0.7789 Intermediate Similarity NPC314100
0.7789 Intermediate Similarity NPC226652
0.7789 Intermediate Similarity NPC72788
0.7765 Intermediate Similarity NPC227683
0.776 Intermediate Similarity NPC207971
0.7759 Intermediate Similarity NPC106786
0.7754 Intermediate Similarity NPC254957
0.7746 Intermediate Similarity NPC31311
0.7746 Intermediate Similarity NPC234392
0.7737 Intermediate Similarity NPC5374
0.7727 Intermediate Similarity NPC59567
0.7727 Intermediate Similarity NPC189470
0.7714 Intermediate Similarity NPC135006
0.7709 Intermediate Similarity NPC6152
0.7697 Intermediate Similarity NPC284842
0.7688 Intermediate Similarity NPC141440
0.7684 Intermediate Similarity NPC39103
0.7684 Intermediate Similarity NPC2770
0.7674 Intermediate Similarity NPC58661
0.7661 Intermediate Similarity NPC223125
0.7637 Intermediate Similarity NPC283810
0.7637 Intermediate Similarity NPC35680
0.7634 Intermediate Similarity NPC474009
0.7633 Intermediate Similarity NPC229787
0.763 Intermediate Similarity NPC477564
0.763 Intermediate Similarity NPC2295
0.7622 Intermediate Similarity NPC7018
0.7605 Intermediate Similarity NPC28398
0.7594 Intermediate Similarity NPC208890
0.7594 Intermediate Similarity NPC166979
0.7592 Intermediate Similarity NPC23080
0.7592 Intermediate Similarity NPC193906
0.7584 Intermediate Similarity NPC306669
0.7584 Intermediate Similarity NPC238530
0.7584 Intermediate Similarity NPC232514
0.7584 Intermediate Similarity NPC276944
0.7584 Intermediate Similarity NPC231198
0.7579 Intermediate Similarity NPC33256
0.7574 Intermediate Similarity NPC46880
0.7572 Intermediate Similarity NPC233029
0.7572 Intermediate Similarity NPC223124
0.7572 Intermediate Similarity NPC210148
0.7546 Intermediate Similarity NPC160692
0.7541 Intermediate Similarity NPC5167
0.7541 Intermediate Similarity NPC85613
0.7529 Intermediate Similarity NPC220577
0.7528 Intermediate Similarity NPC476569
0.7514 Intermediate Similarity NPC477559
0.7514 Intermediate Similarity NPC160298
0.7514 Intermediate Similarity NPC266753
0.7514 Intermediate Similarity NPC474506
0.7514 Intermediate Similarity NPC232924
0.7514 Intermediate Similarity NPC32413
0.7514 Intermediate Similarity NPC306902
0.7514 Intermediate Similarity NPC152212
0.75 Intermediate Similarity NPC23219
0.75 Intermediate Similarity NPC60538
0.75 Intermediate Similarity NPC207824
0.7485 Intermediate Similarity NPC16107
0.7485 Intermediate Similarity NPC51957
0.7485 Intermediate Similarity NPC210437
0.7485 Intermediate Similarity NPC476144
0.7485 Intermediate Similarity NPC106295
0.7473 Intermediate Similarity NPC275132
0.7471 Intermediate Similarity NPC148898
0.7471 Intermediate Similarity NPC145304
0.747 Intermediate Similarity NPC253429
0.7463 Intermediate Similarity NPC55470
0.7459 Intermediate Similarity NPC241055
0.7459 Intermediate Similarity NPC149285
0.7459 Intermediate Similarity NPC470879
0.7459 Intermediate Similarity NPC267408
0.7459 Intermediate Similarity NPC258695
0.7453 Intermediate Similarity NPC286683
0.7446 Intermediate Similarity NPC112575
0.7444 Intermediate Similarity NPC476432
0.7444 Intermediate Similarity NPC24264
0.7443 Intermediate Similarity NPC203784
0.7443 Intermediate Similarity NPC126519
0.7443 Intermediate Similarity NPC170503
0.7442 Intermediate Similarity NPC37144
0.7442 Intermediate Similarity NPC59907
0.7442 Intermediate Similarity NPC7467
0.744 Intermediate Similarity NPC188163
0.744 Intermediate Similarity NPC328750
0.744 Intermediate Similarity NPC474915
0.744 Intermediate Similarity NPC213206
0.7433 Intermediate Similarity NPC135772
0.7429 Intermediate Similarity NPC118332
0.7427 Intermediate Similarity NPC290404
0.7419 Intermediate Similarity NPC476574
0.7419 Intermediate Similarity NPC477561
0.7419 Intermediate Similarity NPC312918
0.7419 Intermediate Similarity NPC155442
0.7414 Intermediate Similarity NPC476579
0.7414 Intermediate Similarity NPC76213
0.7414 Intermediate Similarity NPC37220
0.7414 Intermediate Similarity NPC277669
0.741 Intermediate Similarity NPC89504
0.741 Intermediate Similarity NPC88065
0.741 Intermediate Similarity NPC95485
0.7403 Intermediate Similarity NPC247389
0.7399 Intermediate Similarity NPC211296
0.7399 Intermediate Similarity NPC469540
0.7399 Intermediate Similarity NPC469539
0.7396 Intermediate Similarity NPC908
0.7396 Intermediate Similarity NPC138438
0.7391 Intermediate Similarity NPC477558
0.7389 Intermediate Similarity NPC225774
0.7389 Intermediate Similarity NPC167546
0.7389 Intermediate Similarity NPC16805
0.7389 Intermediate Similarity NPC302527
0.7386 Intermediate Similarity NPC78733
0.7384 Intermediate Similarity NPC476151
0.7384 Intermediate Similarity NPC296575
0.7384 Intermediate Similarity NPC224687
0.7381 Intermediate Similarity NPC314682
0.738 Intermediate Similarity NPC102760
0.7368 Intermediate Similarity NPC281581
0.7366 Intermediate Similarity NPC99723
0.736 Intermediate Similarity NPC118804
0.736 Intermediate Similarity NPC111485
0.7356 Intermediate Similarity NPC478189
0.7354 Intermediate Similarity NPC471650
0.7354 Intermediate Similarity NPC162694
0.7348 Intermediate Similarity NPC219341
0.7346 Intermediate Similarity NPC172403
0.7341 Intermediate Similarity NPC153620
0.7341 Intermediate Similarity NPC24257
0.7337 Intermediate Similarity NPC223336
0.7337 Intermediate Similarity NPC2314
0.733 Intermediate Similarity NPC104353
0.7326 Intermediate Similarity NPC327052
0.7323 Intermediate Similarity NPC80472
0.7322 Intermediate Similarity NPC474708
0.7308 Intermediate Similarity NPC298979
0.7308 Intermediate Similarity NPC210918
0.7306 Intermediate Similarity NPC470646
0.7299 Intermediate Similarity NPC103379
0.7299 Intermediate Similarity NPC477565
0.7293 Intermediate Similarity NPC168409
0.7292 Intermediate Similarity NPC94499
0.7288 Intermediate Similarity NPC187022
0.7288 Intermediate Similarity NPC169742
0.7288 Intermediate Similarity NPC80129
0.7286 Intermediate Similarity NPC222561
0.7278 Intermediate Similarity NPC325122
0.7278 Intermediate Similarity NPC125713
0.7278 Intermediate Similarity NPC470962

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC121400 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.8225 Intermediate Similarity NPD5978 Approved
0.8225 Intermediate Similarity NPD5977 Approved
0.7872 Intermediate Similarity NPD4420 Approved
0.7857 Intermediate Similarity NPD6618 Phase 2
0.7801 Intermediate Similarity NPD5006 Approved
0.7801 Intermediate Similarity NPD5005 Approved
0.7789 Intermediate Similarity NPD5457 Discontinued
0.763 Intermediate Similarity NPD6385 Approved
0.763 Intermediate Similarity NPD6386 Approved
0.7602 Intermediate Similarity NPD4859 Phase 1
0.7594 Intermediate Similarity NPD7235 Clinical (unspecified phase)
0.7553 Intermediate Similarity NPD5525 Clinical (unspecified phase)
0.7515 Intermediate Similarity NPD5084 Clinical (unspecified phase)
0.7514 Intermediate Similarity NPD824 Approved
0.75 Intermediate Similarity NPD5242 Approved
0.75 Intermediate Similarity NPD3639 Approved
0.75 Intermediate Similarity NPD6031 Approved
0.75 Intermediate Similarity NPD3640 Phase 3
0.75 Intermediate Similarity NPD3641 Approved
0.75 Intermediate Similarity NPD6662 Clinical (unspecified phase)
0.75 Intermediate Similarity NPD6030 Approved
0.7485 Intermediate Similarity NPD4584 Approved
0.7471 Intermediate Similarity NPD1337 Clinical (unspecified phase)
0.7446 Intermediate Similarity NPD6297 Approved
0.744 Intermediate Similarity NPD4664 Clinical (unspecified phase)
0.7429 Intermediate Similarity NPD6873 Phase 2
0.7419 Intermediate Similarity NPD7281 Phase 3
0.7419 Intermediate Similarity NPD7280 Phase 3
0.7416 Intermediate Similarity NPD1309 Phase 2
0.7416 Intermediate Similarity NPD1307 Phase 2
0.7414 Intermediate Similarity NPD2649 Approved
0.7414 Intermediate Similarity NPD2651 Approved
0.7394 Intermediate Similarity NPD4084 Clinical (unspecified phase)
0.7378 Intermediate Similarity NPD554 Clinical (unspecified phase)
0.7371 Intermediate Similarity NPD6875 Approved
0.7371 Intermediate Similarity NPD6876 Approved
0.7358 Intermediate Similarity NPD5564 Approved
0.7341 Intermediate Similarity NPD3647 Clinical (unspecified phase)
0.7337 Intermediate Similarity NPD5950 Discontinued
0.733 Intermediate Similarity NPD7110 Phase 1
0.733 Intermediate Similarity NPD7109 Clinical (unspecified phase)
0.7303 Intermediate Similarity NPD5616 Clinical (unspecified phase)
0.7302 Intermediate Similarity NPD3863 Clinical (unspecified phase)
0.7293 Intermediate Similarity NPD6107 Approved
0.7288 Intermediate Similarity NPD7298 Approved
0.7287 Intermediate Similarity NPD6851 Approved
0.7287 Intermediate Similarity NPD6853 Approved
0.7268 Intermediate Similarity NPD4575 Clinical (unspecified phase)
0.7254 Intermediate Similarity NPD4413 Clinical (unspecified phase)
0.7236 Intermediate Similarity NPD7607 Clinical (unspecified phase)
0.7234 Intermediate Similarity NPD6146 Clinical (unspecified phase)
0.7231 Intermediate Similarity NPD5071 Phase 2
0.7219 Intermediate Similarity NPD5192 Clinical (unspecified phase)
0.7219 Intermediate Similarity NPD7039 Approved
0.7219 Intermediate Similarity NPD7038 Approved
0.72 Intermediate Similarity NPD6980 Clinical (unspecified phase)
0.7189 Intermediate Similarity NPD2822 Clinical (unspecified phase)
0.7189 Intermediate Similarity NPD2163 Approved
0.7181 Intermediate Similarity NPD7190 Clinical (unspecified phase)
0.7174 Intermediate Similarity NPD3451 Clinical (unspecified phase)
0.7158 Intermediate Similarity NPD4166 Phase 2
0.7151 Intermediate Similarity NPD4585 Approved
0.7151 Intermediate Similarity NPD2978 Approved
0.7151 Intermediate Similarity NPD2977 Approved
0.7143 Intermediate Similarity NPD2653 Approved
0.7143 Intermediate Similarity NPD3534 Clinical (unspecified phase)
0.7143 Intermediate Similarity NPD2492 Phase 1
0.7135 Intermediate Similarity NPD6377 Clinical (unspecified phase)
0.7102 Intermediate Similarity NPD5976 Discontinued
0.7102 Intermediate Similarity NPD1670 Discontinued
0.7101 Intermediate Similarity NPD743 Approved
0.7093 Intermediate Similarity NPD4162 Approved
0.7086 Intermediate Similarity NPD1424 Approved
0.7086 Intermediate Similarity NPD4662 Approved
0.7086 Intermediate Similarity NPD4661 Approved
0.7085 Intermediate Similarity NPD956 Clinical (unspecified phase)
0.7083 Intermediate Similarity NPD7291 Discontinued
0.7083 Intermediate Similarity NPD7693 Approved
0.7081 Intermediate Similarity NPD2898 Approved
0.7071 Intermediate Similarity NPD4107 Approved
0.7071 Intermediate Similarity NPD7501 Clinical (unspecified phase)
0.707 Intermediate Similarity NPD6625 Approved
0.7069 Intermediate Similarity NPD6783 Clinical (unspecified phase)
0.7059 Intermediate Similarity NPD3050 Clinical (unspecified phase)
0.7059 Intermediate Similarity NPD5312 Approved
0.7059 Intermediate Similarity NPD5313 Approved
0.7053 Intermediate Similarity NPD2968 Approved
0.7053 Intermediate Similarity NPD2971 Approved
0.7041 Intermediate Similarity NPD7667 Clinical (unspecified phase)
0.7033 Intermediate Similarity NPD8005 Clinical (unspecified phase)
0.7026 Intermediate Similarity NPD4466 Phase 1
0.7 Intermediate Similarity NPD8155 Clinical (unspecified phase)
0.6994 Remote Similarity NPD3060 Approved
0.6973 Remote Similarity NPD5183 Approved
0.6973 Remote Similarity NPD5186 Approved
0.695 Remote Similarity NPD4482 Phase 3
0.6942 Remote Similarity NPD7827 Phase 1
0.6936 Remote Similarity NPD1372 Clinical (unspecified phase)
0.6932 Remote Similarity NPD6143 Clinical (unspecified phase)
0.6927 Remote Similarity NPD3455 Phase 2
0.6927 Remote Similarity NPD7090 Clinical (unspecified phase)
0.6927 Remote Similarity NPD4017 Approved
0.6923 Remote Similarity NPD2560 Approved
0.6923 Remote Similarity NPD2563 Approved
0.6923 Remote Similarity NPD3142 Approved
0.6923 Remote Similarity NPD3140 Approved
0.6923 Remote Similarity NPD3808 Clinical (unspecified phase)
0.6919 Remote Similarity NPD1632 Clinical (unspecified phase)
0.6915 Remote Similarity NPD7627 Approved
0.6915 Remote Similarity NPD7626 Approved
0.6907 Remote Similarity NPD3349 Phase 2
0.6901 Remote Similarity NPD6895 Approved
0.6901 Remote Similarity NPD6896 Approved
0.6897 Remote Similarity NPD7999 Approved
0.6886 Remote Similarity NPD5752 Clinical (unspecified phase)
0.6885 Remote Similarity NPD4581 Clinical (unspecified phase)
0.6872 Remote Similarity NPD7858 Clinical (unspecified phase)
0.6863 Remote Similarity NPD6973 Clinical (unspecified phase)
0.686 Remote Similarity NPD6029 Clinical (unspecified phase)
0.686 Remote Similarity NPD6028 Clinical (unspecified phase)
0.6854 Remote Similarity NPD7278 Phase 2
0.6854 Remote Similarity NPD7279 Phase 2
0.6853 Remote Similarity NPD6181 Discontinued
0.6845 Remote Similarity NPD2669 Clinical (unspecified phase)
0.6842 Remote Similarity NPD5441 Clinical (unspecified phase)
0.6842 Remote Similarity NPD2325 Approved
0.6837 Remote Similarity NPD7668 Phase 2
0.6837 Remote Similarity NPD2488 Approved
0.6837 Remote Similarity NPD2490 Approved
0.6834 Remote Similarity NPD2974 Approved
0.6834 Remote Similarity NPD2973 Approved
0.6834 Remote Similarity NPD2975 Approved
0.6832 Remote Similarity NPD3057 Approved
0.6831 Remote Similarity NPD5353 Approved
0.6825 Remote Similarity NPD7893 Clinical (unspecified phase)
0.6821 Remote Similarity NPD6040 Clinical (unspecified phase)
0.6816 Remote Similarity NPD4727 Phase 1
0.6813 Remote Similarity NPD6280 Approved
0.6813 Remote Similarity NPD5720 Discontinued
0.6813 Remote Similarity NPD6279 Approved
0.6812 Remote Similarity NPD683 Approved
0.6811 Remote Similarity NPD6315 Phase 2
0.6809 Remote Similarity NPD6894 Phase 1
0.6805 Remote Similarity NPD5718 Phase 2
0.6804 Remote Similarity NPD5087 Clinical (unspecified phase)
0.6802 Remote Similarity NPD7296 Approved
0.68 Remote Similarity NPD2654 Approved
0.6798 Remote Similarity NPD7597 Clinical (unspecified phase)
0.6794 Remote Similarity NPD7930 Approved
0.6791 Remote Similarity NPD6747 Phase 1
0.6786 Remote Similarity NPD5896 Clinical (unspecified phase)
0.678 Remote Similarity NPD7584 Approved
0.6772 Remote Similarity NPD3366 Approved
0.6763 Remote Similarity NPD5914 Approved
0.6762 Remote Similarity NPD8149 Discontinued
0.6761 Remote Similarity NPD3977 Clinical (unspecified phase)
0.6757 Remote Similarity NPD7831 Phase 2
0.6757 Remote Similarity NPD7832 Clinical (unspecified phase)
0.6757 Remote Similarity NPD7833 Phase 2
0.6749 Remote Similarity NPD3448 Approved
0.6749 Remote Similarity NPD2972 Approved
0.6749 Remote Similarity NPD3533 Approved
0.6749 Remote Similarity NPD2491 Approved
0.6745 Remote Similarity NPD8318 Clinical (unspecified phase)
0.6742 Remote Similarity NPD4846 Phase 2
0.6738 Remote Similarity NPD2821 Approved
0.6737 Remote Similarity NPD6620 Discovery
0.6737 Remote Similarity NPD3818 Discontinued
0.6737 Remote Similarity NPD7177 Discontinued
0.6737 Remote Similarity NPD8099 Discontinued
0.6737 Remote Similarity NPD8251 Approved
0.6737 Remote Similarity NPD8252 Approved
0.6736 Remote Similarity NPD4419 Clinical (unspecified phase)
0.6734 Remote Similarity NPD7669 Phase 3
0.6733 Remote Similarity NPD6780 Approved
0.6733 Remote Similarity NPD6781 Approved
0.6733 Remote Similarity NPD6778 Approved
0.6733 Remote Similarity NPD6779 Approved
0.6733 Remote Similarity NPD6782 Approved
0.6733 Remote Similarity NPD6777 Approved
0.6733 Remote Similarity NPD7255 Clinical (unspecified phase)
0.6733 Remote Similarity NPD4580 Approved
0.6733 Remote Similarity NPD6776 Approved
0.6722 Remote Similarity NPD5586 Clinical (unspecified phase)
0.6721 Remote Similarity NPD7577 Discontinued
0.6721 Remote Similarity NPD3383 Approved
0.6721 Remote Similarity NPD3382 Approved
0.6721 Remote Similarity NPD3384 Approved
0.6721 Remote Similarity NPD6844 Discontinued
0.672 Remote Similarity NPD4481 Phase 3
0.6719 Remote Similarity NPD3823 Discontinued
0.6705 Remote Similarity NPD2976 Clinical (unspecified phase)
0.6703 Remote Similarity NPD5019 Clinical (unspecified phase)
0.6703 Remote Similarity NPD6788 Approved
0.6703 Remote Similarity NPD4947 Clinical (unspecified phase)
0.6702 Remote Similarity NPD6808 Phase 2
0.6702 Remote Similarity NPD6071 Discontinued
0.6702 Remote Similarity NPD4503 Phase 2
0.6702 Remote Similarity NPD8156 Discontinued
0.6701 Remote Similarity NPD5910 Clinical (unspecified phase)

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data