Structure

Physi-Chem Properties

Molecular Weight:  798.48
Volume:  801.439
LogP:  2.676
LogD:  2.719
LogS:  -3.176
# Rotatable Bonds:  10
TPSA:  236.06
# H-Bond Aceptor:  14
# H-Bond Donor:  9
# Rings:  6
# Heavy Atoms:  14

MedChem Properties

QED Drug-Likeness Score:  0.142
Synthetic Accessibility Score:  6.107
Fsp3:  0.929
Lipinski Rule-of-5:  Rejected
Pfizer Rule:  Accepted
GSK Rule:  Rejected
BMS Rule:  3
Golden Triangle Rule:  Rejected
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -5.552
MDCK Permeability:  2.566598959674593e-05
Pgp-inhibitor:  0.793
Pgp-substrate:  0.005
Human Intestinal Absorption (HIA):  0.406
20% Bioavailability (F20%):  0.127
30% Bioavailability (F30%):  0.99

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.002
Plasma Protein Binding (PPB):  79.78771209716797%
Volume Distribution (VD):  0.434
Pgp-substrate:  10.807510375976562%

ADMET: Metabolism

CYP1A2-inhibitor:  0.002
CYP1A2-substrate:  0.139
CYP2C19-inhibitor:  0.002
CYP2C19-substrate:  0.464
CYP2C9-inhibitor:  0.005
CYP2C9-substrate:  0.045
CYP2D6-inhibitor:  0.003
CYP2D6-substrate:  0.096
CYP3A4-inhibitor:  0.014
CYP3A4-substrate:  0.029

ADMET: Excretion

Clearance (CL):  0.745
Half-life (T1/2):  0.576

ADMET: Toxicity

hERG Blockers:  0.415
Human Hepatotoxicity (H-HT):  0.186
Drug-inuced Liver Injury (DILI):  0.02
AMES Toxicity:  0.079
Rat Oral Acute Toxicity:  0.18
Maximum Recommended Daily Dose:  0.024
Skin Sensitization:  0.923
Carcinogencity:  0.005
Eye Corrosion:  0.003
Eye Irritation:  0.018
Respiratory Toxicity:  0.748

Download Data

Data Type Select
General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs  

  Natural Product: NPC207824

Natural Product ID:  NPC207824
Common Name*:   Norarmepavine
IUPAC Name:   4-[[(1S)-6,7-dimethoxy-1,2,3,4-tetrahydroisoquinolin-1-yl]methyl]phenol
Synonyms:   Norarmepavine
Standard InCHIKey:  NKBBUUNAVOMVER-INIZCTEOSA-N
Standard InCHI:  InChI=1S/C18H21NO3/c1-21-17-10-13-7-8-19-16(15(13)11-18(17)22-2)9-12-3-5-14(20)6-4-12/h3-6,10-11,16,19-20H,7-9H2,1-2H3/t16-/m0/s1
SMILES:  COc1cc2[C@@H](NCCc2cc1OC)Cc1ccc(cc1)O
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL453038
PubChem CID:   6999736
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000002] Organoheterocyclic compounds
      • [CHEMONTID:0002566] Isoquinolines and derivatives
        • [CHEMONTID:0000054] Benzylisoquinolines

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO11043 Pisum sativum Species Fabaceae Eukaryota n.a. n.a. n.a. DOI[10.1016/j.jfca.2005.08.001]
NPO4562 Lonchocarpus urucu Species Fabaceae Eukaryota n.a. root n.a. PMID[10075742]
NPO12181 Albizia julibrissin Species Fabaceae Eukaryota n.a. bark n.a. PMID[15283458]
NPO11043 Pisum sativum Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[15286289]
NPO12181 Albizia julibrissin Species Fabaceae Eukaryota n.a. stem n.a. PMID[15577257]
NPO11043 Pisum sativum Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[18460139]
NPO11043 Pisum sativum Species Fabaceae Eukaryota n.a. seed n.a. PMID[20947202]
NPO12323 Bos taurus Species Bovidae Eukaryota n.a. n.a. n.a. PMID[24211545]
NPO11043 Pisum sativum Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[24253552]
NPO4640 Portulaca oleracea Species Portulacaceae Eukaryota n.a. n.a. n.a. PMID[26562741]
NPO7191 Mimosa pudica Species Fabaceae Eukaryota n.a. root n.a. PMID[26661932]
NPO4640 Portulaca oleracea Species Portulacaceae Eukaryota n.a. n.a. n.a. PMID[29517238]
NPO4640 Portulaca oleracea Species Portulacaceae Eukaryota n.a. n.a. n.a. PMID[31625751]
NPO9740 Dacrycarpus imbricatus Species Podocarpaceae Eukaryota Twigs n.a. n.a. PMID[32786878]
NPO4640 Portulaca oleracea Species Portulacaceae Eukaryota n.a. Along the Valencian coast, Spain 2020-Jun&Jul PMID[35161358]
NPO12323 Bos taurus Species Bovidae Eukaryota Urine n.a. n.a. PMID[6330305]
NPO18650 Carassius auratus Species Cyprinidae Eukaryota n.a. n.a. n.a. PMID[6880243]
NPO32838 artabottys maingayi Species n.a. n.a. n.a. n.a. n.a. PMID[8676127]
NPO11043 Pisum sativum Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[8987503]
NPO12181 Albizia julibrissin Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[9051910]
NPO12323 Bos taurus Species Bovidae Eukaryota n.a. n.a. n.a. PMID[932730]
NPO993 Phaseolus coccineus Species Fabaceae Eukaryota Fruit n.a. n.a. Database[FooDB]
NPO993 Phaseolus coccineus Species Fabaceae Eukaryota n.a. n.a. Database[FooDB]
NPO11043 Pisum sativum Species Fabaceae Eukaryota Fruit n.a. n.a. Database[FooDB]
NPO4640 Portulaca oleracea Species Portulacaceae Eukaryota Herb n.a. n.a. Database[FooDB]
NPO11043 Pisum sativum Species Fabaceae Eukaryota Leaf n.a. n.a. Database[FooDB]
NPO11043 Pisum sativum Species Fabaceae Eukaryota n.a. n.a. Database[FooDB]
NPO993 Phaseolus coccineus Species Fabaceae Eukaryota Leaf Diffusate n.a. n.a. Database[FooDB]
NPO12323 Bos taurus Species Bovidae Eukaryota n.a. n.a. Database[FooDB]
NPO4640 Portulaca oleracea Species Portulacaceae Eukaryota Plant n.a. n.a. Database[FooDB]
NPO11043 Pisum sativum Species Fabaceae Eukaryota Root n.a. n.a. Database[FooDB]
NPO4640 Portulaca oleracea Species Portulacaceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO993 Phaseolus coccineus Species Fabaceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO11043 Pisum sativum Species Fabaceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO11043 Pisum sativum Species Fabaceae Eukaryota Shoot n.a. n.a. Database[FooDB]
NPO11043 Pisum sativum Species Fabaceae Eukaryota Sprout Seedling n.a. n.a. Database[FooDB]
NPO11043 Pisum sativum Species Fabaceae Eukaryota Stem n.a. n.a. Database[FooDB]
NPO11043 Pisum sativum Species Fabaceae Eukaryota Tissue Culture n.a. n.a. Database[FooDB]
NPO12323 Bos taurus Species Bovidae Eukaryota n.a. n.a. Database[FooDB]
NPO11043 Pisum sativum Species Fabaceae Eukaryota Wax n.a. n.a. Database[FooDB]
NPO11043 Pisum sativum Species Fabaceae Eukaryota n.a. n.a. Database[FooDB]
NPO4640 Portulaca oleracea Species Portulacaceae Eukaryota n.a. n.a. Database[FooDB]
NPO4640 Portulaca oleracea Species Portulacaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO30660 Phaseolus multiflorus Species Fabaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO7191 Mimosa pudica Species Fabaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO31171 Albizzia julibrissin n.a. n.a. n.a. n.a. n.a. n.a. Database[HerDing]
NPO12323 Bos taurus Species Bovidae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO11043 Pisum sativum Species Fabaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO18650 Carassius auratus Species Cyprinidae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO29892.2 Musa paradisiaca var. sapientum Varieties Musaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO23714 Hemiechinus auritus Species Erinaceidae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO6017 Artemisia arbuscula Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO15859 Passiflora quadrangularis Species Passifloraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO3248 Hemiechinus dauuricus Species Erinaceidae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO17393 Bubalus bubalis Species Bovidae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO11043 Pisum sativum Species Fabaceae Eukaryota Seeds n.a. Database[Phenol-Explorer]
NPO11043 Pisum sativum Species Fabaceae Eukaryota n.a. n.a. Database[Phenol-Explorer]
NPO29595 Erinaceus europaeus Species Erinaceidae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO17393 Bubalus bubalis Species Bovidae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO3248 Hemiechinus dauuricus Species Erinaceidae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO6017 Artemisia arbuscula Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO549.1 Musa paradisiaca var. sapientum Varieties Musaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO9740 Dacrycarpus imbricatus Species Podocarpaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO15859 Passiflora quadrangularis Species Passifloraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO993 Phaseolus coccineus Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO7191 Mimosa pudica Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO12323 Bos taurus Species Bovidae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO11043 Pisum sativum Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO4640 Portulaca oleracea Species Portulacaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO18650 Carassius auratus Species Cyprinidae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO12181 Albizia julibrissin Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO23714 Hemiechinus auritus Species Erinaceidae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO18650 Carassius auratus Species Cyprinidae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO17393 Bubalus bubalis Species Bovidae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO23714 Hemiechinus auritus Species Erinaceidae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO12323 Bos taurus Species Bovidae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO12181 Albizia julibrissin Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO3248 Hemiechinus dauuricus Species Erinaceidae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO4640 Portulaca oleracea Species Portulacaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO4640 Portulaca oleracea Species Portulacaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO12181 Albizia julibrissin Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO2622 Cheilanthes mysurensis Species Pteridaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18650 Carassius auratus Species Cyprinidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1477 Egregia menziesii Species Lessoniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23714 Hemiechinus auritus Species Erinaceidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9234 Cynoctonum wilfordii n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO9740 Dacrycarpus imbricatus Species Podocarpaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO993 Phaseolus coccineus Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4562 Lonchocarpus urucu Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15859 Passiflora quadrangularis Species Passifloraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6017 Artemisia arbuscula Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13443 Doris montereyensis Species Dorididae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7191 Mimosa pudica Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9094 Citrus reshni Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12181 Albizia julibrissin Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6559 Duddingtonia flagrans Species n.a. Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11043 Pisum sativum Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12323 Bos taurus Species Bovidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8794 Aconitum fauriei Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO378 Myristica argentea Species Myristicaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO182 Cylas formicarius Species Brentidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO790 Cybister confusus Species Dytiscidae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT1073 Individual Protein Dopamine transporter Rattus norvegicus IC50 = 37000.0 nM PMID[480255]
NPT56 Individual Protein Beta-lactamase AmpC Escherichia coli K-12 Potency = 631.0 nM PMID[480256]
NPT5 Individual Protein Histone-lysine N-methyltransferase, H3 lysine-9 specific 3 Homo sapiens Potency n.a. 100000.0 nM PMID[480256]
NPT198 Individual Protein Vitamin D receptor Homo sapiens Potency n.a. 70794.6 nM PMID[480256]
NPT135 Individual Protein Chromobox protein homolog 1 Homo sapiens Potency n.a. 112201.8 nM PMID[480256]
NPT154 Individual Protein Mothers against decapentaplegic homolog 3 Homo sapiens Potency n.a. 22387.2 nM PMID[480256]
NPT10 Individual Protein Geminin Homo sapiens Potency n.a. 16360.1 nM PMID[480256]
NPT10 Individual Protein Geminin Homo sapiens Potency n.a. 4.6 nM PMID[480256]
NPT478 Individual Protein Ataxin-2 Homo sapiens Potency n.a. 44668.4 nM PMID[480256]
NPT101 Individual Protein Glucagon-like peptide 1 receptor Homo sapiens Potency n.a. 28183.8 nM PMID[480256]
NPT11 Individual Protein Guanine nucleotide-binding protein G(s), subunit alpha Homo sapiens Potency n.a. 3548.1 nM PMID[480256]
NPT50 Individual Protein Tyrosyl-DNA phosphodiesterase 1 Homo sapiens Potency n.a. 14581.0 nM PMID[480256]
NPT50 Individual Protein Tyrosyl-DNA phosphodiesterase 1 Homo sapiens Potency n.a. 16360.1 nM PMID[480256]
NPT535 Individual Protein Parathyroid hormone receptor Homo sapiens Potency n.a. 44668.4 nM PMID[480256]
NPT49 Individual Protein DNA-(apurinic or apyrimidinic site) lyase Homo sapiens Potency n.a. 8912.5 nM PMID[480256]
NPT20967 CELL-LINE Platelet n.a. Activity = 69.7 % PMID[480254]
NPT20967 CELL-LINE Platelet n.a. Activity = 75.5 % PMID[480254]
NPT20967 CELL-LINE Platelet n.a. Activity = 83.4 % PMID[480254]
NPT20967 CELL-LINE Platelet n.a. Activity = 57.8 % PMID[480254]
NPT177 Tissue Aorta Rattus norvegicus Activity = 71.2 % PMID[480254]
NPT177 Tissue Aorta Rattus norvegicus Activity = 121.9 % PMID[480254]
NPT177 Tissue Aorta Rattus norvegicus Activity = 105.7 % PMID[480254]
NPT2 Others Unspecified Ratio IC50 = 0.6 n.a. PMID[480255]
NPT2 Others Unspecified Ratio IC50 = 0.3 n.a. PMID[480255]
NPT2 Others Unspecified Potency = 31622.8 nM PMID[480256]
NPT2 Others Unspecified EC50 = 23380.0 nM PMID[480256]
NPT2 Others Unspecified IC50 = 87029.0 nM PMID[480256]
NPT21702 PROTEIN-PROTEIN INTERACTION Importin subunit beta-1/Snurportin-1 Homo sapiens Potency n.a. 125892.5 nM PMID[480256]
NPT7 Individual Protein Thioredoxin reductase 1, cytoplasmic Rattus norvegicus Potency n.a. 25118.9 nM PMID[480256]
NPT698 Individual Protein Regulator of G-protein signaling 4 Homo sapiens Potency n.a. 50118.7 nM PMID[480256]
NPT2 Others Unspecified Potency n.a. 12589.3 nM PMID[480256]
NPT2 Others Unspecified Potency n.a. 4466.8 nM PMID[480256]
NPT2 Others Unspecified Potency n.a. 31622.8 nM PMID[480256]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC207824 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC60538
0.9859 High Similarity NPC277669
0.9859 High Similarity NPC76213
0.9586 High Similarity NPC477564
0.9586 High Similarity NPC2295
0.9574 High Similarity NPC185838
0.9441 High Similarity NPC191376
0.9441 High Similarity NPC179825
0.9441 High Similarity NPC321505
0.9375 High Similarity NPC147390
0.9375 High Similarity NPC246587
0.9375 High Similarity NPC428
0.9375 High Similarity NPC24233
0.9375 High Similarity NPC135538
0.9375 High Similarity NPC476571
0.9366 High Similarity NPC294249
0.9306 High Similarity NPC476151
0.922 High Similarity NPC314682
0.9214 High Similarity NPC253429
0.9178 High Similarity NPC103379
0.9178 High Similarity NPC477565
0.9155 High Similarity NPC213206
0.9155 High Similarity NPC188163
0.9155 High Similarity NPC328750
0.9155 High Similarity NPC474915
0.915 High Similarity NPC35627
0.915 High Similarity NPC476573
0.915 High Similarity NPC81247
0.9116 High Similarity NPC192768
0.9116 High Similarity NPC97221
0.9116 High Similarity NPC151895
0.9116 High Similarity NPC88249
0.9116 High Similarity NPC220858
0.9085 High Similarity NPC121275
0.9085 High Similarity NPC4138
0.9085 High Similarity NPC284183
0.9014 High Similarity NPC211468
0.9014 High Similarity NPC219233
0.9014 High Similarity NPC170170
0.9 High Similarity NPC110416
0.9 High Similarity NPC2413
0.9 High Similarity NPC278799
0.9 High Similarity NPC295691
0.9 High Similarity NPC204828
0.9 High Similarity NPC54379
0.9 High Similarity NPC207757
0.9 High Similarity NPC184026
0.9 High Similarity NPC276588
0.9 High Similarity NPC39701
0.9 High Similarity NPC249797
0.9 High Similarity NPC127674
0.9 High Similarity NPC5238
0.9 High Similarity NPC172765
0.9 High Similarity NPC469817
0.9 High Similarity NPC193949
0.9 High Similarity NPC189266
0.8951 High Similarity NPC323123
0.894 High Similarity NPC126519
0.894 High Similarity NPC203784
0.894 High Similarity NPC170503
0.8929 High Similarity NPC160692
0.8917 High Similarity NPC475215
0.8917 High Similarity NPC108434
0.8897 High Similarity NPC476567
0.8897 High Similarity NPC136860
0.8897 High Similarity NPC128019
0.8874 High Similarity NPC80129
0.8874 High Similarity NPC187022
0.8861 High Similarity NPC192135
0.8861 High Similarity NPC66341
0.8861 High Similarity NPC477020
0.8854 High Similarity NPC69712
0.8854 High Similarity NPC26240
0.8854 High Similarity NPC109925
0.8854 High Similarity NPC477562
0.8784 High Similarity NPC476144
0.8784 High Similarity NPC51957
0.8784 High Similarity NPC106295
0.8784 High Similarity NPC16107
0.8784 High Similarity NPC210437
0.8766 High Similarity NPC27410
0.8766 High Similarity NPC166014
0.8742 High Similarity NPC82285
0.8742 High Similarity NPC133011
0.8741 High Similarity NPC131204
0.8741 High Similarity NPC301050
0.8734 High Similarity NPC152212
0.8733 High Similarity NPC274026
0.8725 High Similarity NPC475959
0.8725 High Similarity NPC7467
0.8701 High Similarity NPC111485
0.8693 High Similarity NPC147091
0.8654 High Similarity NPC475393
0.8642 High Similarity NPC474507
0.8636 High Similarity NPC79328
0.8634 High Similarity NPC173416
0.8634 High Similarity NPC148709
0.8634 High Similarity NPC476577
0.8618 High Similarity NPC26601
0.8599 High Similarity NPC232514
0.8599 High Similarity NPC276944
0.8599 High Similarity NPC238530
0.8592 High Similarity NPC302171
0.8592 High Similarity NPC300020
0.8592 High Similarity NPC33338
0.8582 High Similarity NPC160193
0.8571 High Similarity NPC477558
0.8553 High Similarity NPC81733
0.8553 High Similarity NPC326316
0.8544 High Similarity NPC86144
0.8544 High Similarity NPC13916
0.8544 High Similarity NPC304659
0.8544 High Similarity NPC240841
0.8544 High Similarity NPC42549
0.8544 High Similarity NPC317272
0.8544 High Similarity NPC256012
0.8544 High Similarity NPC250846
0.8544 High Similarity NPC264850
0.8544 High Similarity NPC268503
0.8535 High Similarity NPC324144
0.8523 High Similarity NPC130926
0.8497 Intermediate Similarity NPC37272
0.8491 Intermediate Similarity NPC12053
0.8491 Intermediate Similarity NPC474931
0.8491 Intermediate Similarity NPC306555
0.8491 Intermediate Similarity NPC145832
0.8491 Intermediate Similarity NPC158376
0.8491 Intermediate Similarity NPC298979
0.8491 Intermediate Similarity NPC81218
0.8491 Intermediate Similarity NPC117188
0.8491 Intermediate Similarity NPC205421
0.8485 Intermediate Similarity NPC135772
0.8481 Intermediate Similarity NPC13504
0.8481 Intermediate Similarity NPC306843
0.8481 Intermediate Similarity NPC136508
0.8481 Intermediate Similarity NPC196447
0.8481 Intermediate Similarity NPC253043
0.8481 Intermediate Similarity NPC96603
0.8481 Intermediate Similarity NPC134858
0.8481 Intermediate Similarity NPC24465
0.8481 Intermediate Similarity NPC477563
0.8481 Intermediate Similarity NPC78222
0.8481 Intermediate Similarity NPC212794
0.8476 Intermediate Similarity NPC155442
0.8476 Intermediate Similarity NPC477561
0.8476 Intermediate Similarity NPC312918
0.8476 Intermediate Similarity NPC476574
0.8452 Intermediate Similarity NPC29647
0.8452 Intermediate Similarity NPC186063
0.844 Intermediate Similarity NPC172403
0.8438 Intermediate Similarity NPC83198
0.8438 Intermediate Similarity NPC204908
0.8431 Intermediate Similarity NPC476568
0.8425 Intermediate Similarity NPC193528
0.8421 Intermediate Similarity NPC219162
0.8421 Intermediate Similarity NPC92541
0.8418 Intermediate Similarity NPC233650
0.8418 Intermediate Similarity NPC189470
0.8418 Intermediate Similarity NPC1229
0.8408 Intermediate Similarity NPC249274
0.8408 Intermediate Similarity NPC205167
0.8387 Intermediate Similarity NPC41178
0.8387 Intermediate Similarity NPC216459
0.8387 Intermediate Similarity NPC138487
0.8377 Intermediate Similarity NPC210148
0.8377 Intermediate Similarity NPC233029
0.8375 Intermediate Similarity NPC204947
0.8375 Intermediate Similarity NPC210140
0.8365 Intermediate Similarity NPC209377
0.8365 Intermediate Similarity NPC2770
0.8365 Intermediate Similarity NPC39103
0.8354 Intermediate Similarity NPC60186
0.8344 Intermediate Similarity NPC59028
0.8344 Intermediate Similarity NPC92191
0.8333 Intermediate Similarity NPC37205
0.8333 Intermediate Similarity NPC247639
0.8333 Intermediate Similarity NPC25084
0.8333 Intermediate Similarity NPC146288
0.8333 Intermediate Similarity NPC160931
0.8323 Intermediate Similarity NPC66573
0.8313 Intermediate Similarity NPC195392
0.8313 Intermediate Similarity NPC56887
0.8313 Intermediate Similarity NPC223077
0.8313 Intermediate Similarity NPC193853
0.8291 Intermediate Similarity NPC97072
0.8291 Intermediate Similarity NPC215829
0.8289 Intermediate Similarity NPC95075
0.8289 Intermediate Similarity NPC144863
0.8289 Intermediate Similarity NPC253883
0.8289 Intermediate Similarity NPC90844
0.8286 Intermediate Similarity NPC217277
0.8284 Intermediate Similarity NPC11296
0.8284 Intermediate Similarity NPC48490
0.8284 Intermediate Similarity NPC175890
0.8284 Intermediate Similarity NPC274661
0.8284 Intermediate Similarity NPC82457
0.8282 Intermediate Similarity NPC232386
0.8282 Intermediate Similarity NPC152680
0.8282 Intermediate Similarity NPC190783
0.828 Intermediate Similarity NPC476572

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC207824 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.9155 High Similarity NPD4664 Clinical (unspecified phase)
0.8919 High Similarity NPD6031 Approved
0.8919 High Similarity NPD6030 Approved
0.8874 High Similarity NPD7298 Approved
0.8784 High Similarity NPD4584 Approved
0.8649 High Similarity NPD3845 Phase 1
0.8553 High Similarity NPD4017 Approved
0.8523 High Similarity NPD2422 Clinical (unspecified phase)
0.8456 Intermediate Similarity NPD5241 Discontinued
0.8446 Intermediate Similarity NPD3060 Approved
0.8442 Intermediate Similarity NPD4772 Phase 2
0.8442 Intermediate Similarity NPD4773 Phase 2
0.8428 Intermediate Similarity NPD4010 Discontinued
0.8418 Intermediate Similarity NPD7201 Clinical (unspecified phase)
0.8405 Intermediate Similarity NPD6297 Approved
0.8367 Intermediate Similarity NPD1632 Clinical (unspecified phase)
0.8301 Intermediate Similarity NPD3640 Phase 3
0.8301 Intermediate Similarity NPD3641 Approved
0.8301 Intermediate Similarity NPD3639 Approved
0.8217 Intermediate Similarity NPD6818 Clinical (unspecified phase)
0.821 Intermediate Similarity NPD2898 Approved
0.8204 Intermediate Similarity NPD6853 Approved
0.8204 Intermediate Similarity NPD6851 Approved
0.8176 Intermediate Similarity NPD7833 Phase 2
0.8176 Intermediate Similarity NPD7831 Phase 2
0.8176 Intermediate Similarity NPD7832 Clinical (unspecified phase)
0.8169 Intermediate Similarity NPD3055 Approved
0.8169 Intermediate Similarity NPD3053 Approved
0.8138 Intermediate Similarity NPD5718 Phase 2
0.8137 Intermediate Similarity NPD6107 Approved
0.8101 Intermediate Similarity NPD2977 Approved
0.8101 Intermediate Similarity NPD2978 Approved
0.8086 Intermediate Similarity NPD4166 Phase 2
0.8079 Intermediate Similarity NPD4162 Approved
0.8069 Intermediate Similarity NPD2669 Clinical (unspecified phase)
0.8052 Intermediate Similarity NPD1754 Clinical (unspecified phase)
0.8014 Intermediate Similarity NPD2028 Clinical (unspecified phase)
0.8 Intermediate Similarity NPD4581 Clinical (unspecified phase)
0.7988 Intermediate Similarity NPD8054 Approved
0.7988 Intermediate Similarity NPD8053 Approved
0.7987 Intermediate Similarity NPD2420 Approved
0.7987 Intermediate Similarity NPD2421 Approved
0.7959 Intermediate Similarity NPD554 Clinical (unspecified phase)
0.7959 Intermediate Similarity NPD2674 Phase 3
0.7935 Intermediate Similarity NPD1424 Approved
0.7933 Intermediate Similarity NPD6029 Clinical (unspecified phase)
0.7933 Intermediate Similarity NPD6028 Clinical (unspecified phase)
0.7908 Intermediate Similarity NPD3977 Clinical (unspecified phase)
0.7885 Intermediate Similarity NPD3647 Clinical (unspecified phase)
0.7879 Intermediate Similarity NPD27 Approved
0.7879 Intermediate Similarity NPD2489 Approved
0.7877 Intermediate Similarity NPD5752 Clinical (unspecified phase)
0.7866 Intermediate Similarity NPD6071 Discontinued
0.7847 Intermediate Similarity NPD5310 Approved
0.7847 Intermediate Similarity NPD5311 Approved
0.7843 Intermediate Similarity NPD5177 Phase 3
0.7831 Intermediate Similarity NPD5602 Clinical (unspecified phase)
0.7826 Intermediate Similarity NPD2563 Approved
0.7826 Intermediate Similarity NPD2560 Approved
0.7818 Intermediate Similarity NPD2970 Approved
0.7818 Intermediate Similarity NPD2969 Approved
0.7818 Intermediate Similarity NPD4083 Discontinued
0.78 Intermediate Similarity NPD823 Approved
0.78 Intermediate Similarity NPD817 Approved
0.7784 Intermediate Similarity NPD8251 Approved
0.7784 Intermediate Similarity NPD8252 Approved
0.7784 Intermediate Similarity NPD8099 Discontinued
0.7778 Intermediate Similarity NPD7153 Discontinued
0.7778 Intermediate Similarity NPD6788 Approved
0.777 Intermediate Similarity NPD3144 Approved
0.777 Intermediate Similarity NPD3145 Approved
0.7765 Intermediate Similarity NPD8453 Clinical (unspecified phase)
0.7758 Intermediate Similarity NPD3051 Approved
0.7756 Intermediate Similarity NPD3124 Discontinued
0.7748 Intermediate Similarity NPD6895 Approved
0.7748 Intermediate Similarity NPD6896 Approved
0.7742 Intermediate Similarity NPD5160 Discontinued
0.7738 Intermediate Similarity NPD8156 Discontinued
0.7727 Intermediate Similarity NPD2458 Approved
0.7727 Intermediate Similarity NPD2460 Phase 3
0.7727 Intermediate Similarity NPD2459 Approved
0.7718 Intermediate Similarity NPD3531 Approved
0.7718 Intermediate Similarity NPD3532 Approved
0.7718 Intermediate Similarity NPD3530 Approved
0.7712 Intermediate Similarity NPD2029 Clinical (unspecified phase)
0.7707 Intermediate Similarity NPD2874 Phase 2
0.7702 Intermediate Similarity NPD5720 Discontinued
0.7697 Intermediate Similarity NPD7802 Discontinued
0.7697 Intermediate Similarity NPD1753 Discontinued
0.7692 Intermediate Similarity NPD7479 Phase 2
0.7682 Intermediate Similarity NPD2989 Phase 2
0.7682 Intermediate Similarity NPD2986 Phase 2
0.7682 Intermediate Similarity NPD3054 Approved
0.7682 Intermediate Similarity NPD3052 Approved
0.7679 Intermediate Similarity NPD5708 Clinical (unspecified phase)
0.7643 Intermediate Similarity NPD7598 Phase 2
0.763 Intermediate Similarity NPD5087 Clinical (unspecified phase)
0.7628 Intermediate Similarity NPD5084 Clinical (unspecified phase)
0.7625 Intermediate Similarity NPD7261 Clinical (unspecified phase)
0.761 Intermediate Similarity NPD5976 Discontinued
0.7607 Intermediate Similarity NPD5977 Approved
0.7607 Intermediate Similarity NPD5978 Approved
0.76 Intermediate Similarity NPD1130 Approved
0.76 Intermediate Similarity NPD1132 Approved
0.76 Intermediate Similarity NPD1136 Approved
0.7595 Intermediate Similarity NPD1771 Clinical (unspecified phase)
0.7582 Intermediate Similarity NPD2156 Approved
0.7582 Intermediate Similarity NPD2155 Approved
0.7582 Intermediate Similarity NPD2154 Approved
0.758 Intermediate Similarity NPD6783 Clinical (unspecified phase)
0.7576 Intermediate Similarity NPD5709 Phase 3
0.7572 Intermediate Similarity NPD6618 Phase 2
0.7566 Intermediate Similarity NPD2653 Approved
0.755 Intermediate Similarity NPD3059 Approved
0.755 Intermediate Similarity NPD3110 Approved
0.755 Intermediate Similarity NPD3062 Approved
0.755 Intermediate Similarity NPD3061 Approved
0.755 Intermediate Similarity NPD3109 Approved
0.7548 Intermediate Similarity NPD7045 Clinical (unspecified phase)
0.7547 Intermediate Similarity NPD5261 Clinical (unspecified phase)
0.7533 Intermediate Similarity NPD597 Approved
0.7533 Intermediate Similarity NPD601 Approved
0.7533 Intermediate Similarity NPD3056 Clinical (unspecified phase)
0.7533 Intermediate Similarity NPD598 Approved
0.753 Intermediate Similarity NPD4666 Phase 3
0.7516 Intermediate Similarity NPD5307 Clinical (unspecified phase)
0.7516 Intermediate Similarity NPD4005 Discontinued
0.7515 Intermediate Similarity NPD4055 Discovery
0.75 Intermediate Similarity NPD2668 Approved
0.75 Intermediate Similarity NPD4727 Phase 1
0.75 Intermediate Similarity NPD2667 Approved
0.7483 Intermediate Similarity NPD4475 Approved
0.7483 Intermediate Similarity NPD4474 Approved
0.7468 Intermediate Similarity NPD2120 Phase 2
0.7466 Intermediate Similarity NPD2232 Approved
0.7466 Intermediate Similarity NPD2230 Approved
0.7466 Intermediate Similarity NPD2233 Approved
0.7457 Intermediate Similarity NPD3936 Clinical (unspecified phase)
0.7453 Intermediate Similarity NPD3687 Approved
0.7453 Intermediate Similarity NPD3686 Approved
0.7452 Intermediate Similarity NPD6331 Phase 2
0.7452 Intermediate Similarity NPD6658 Clinical (unspecified phase)
0.7451 Intermediate Similarity NPD5314 Approved
0.745 Intermediate Similarity NPD3635 Approved
0.745 Intermediate Similarity NPD3636 Approved
0.745 Intermediate Similarity NPD3637 Approved
0.7443 Intermediate Similarity NPD7906 Approved
0.7439 Intermediate Similarity NPD4585 Approved
0.7438 Intermediate Similarity NPD7527 Clinical (unspecified phase)
0.7438 Intermediate Similarity NPD7526 Approved
0.7438 Intermediate Similarity NPD52 Approved
0.7436 Intermediate Similarity NPD4256 Phase 2
0.7436 Intermediate Similarity NPD4257 Approved
0.7431 Intermediate Similarity NPD4093 Discontinued
0.7427 Intermediate Similarity NPD4873 Discontinued
0.7427 Intermediate Similarity NPD5312 Approved
0.7427 Intermediate Similarity NPD5313 Approved
0.7427 Intermediate Similarity NPD5096 Phase 3
0.7427 Intermediate Similarity NPD6042 Phase 2
0.7427 Intermediate Similarity NPD5095 Phase 3
0.7427 Intermediate Similarity NPD42 Phase 2
0.7423 Intermediate Similarity NPD7109 Clinical (unspecified phase)
0.7423 Intermediate Similarity NPD7110 Phase 1
0.7419 Intermediate Similarity NPD3156 Discontinued
0.7415 Intermediate Similarity NPD1669 Approved
0.7414 Intermediate Similarity NPD7313 Approved
0.7414 Intermediate Similarity NPD7310 Approved
0.7414 Intermediate Similarity NPD4578 Approved
0.7414 Intermediate Similarity NPD7312 Approved
0.7414 Intermediate Similarity NPD3534 Clinical (unspecified phase)
0.7414 Intermediate Similarity NPD7311 Approved
0.7414 Intermediate Similarity NPD4577 Approved
0.7405 Intermediate Similarity NPD3692 Discontinued
0.7405 Intermediate Similarity NPD2677 Approved
0.7389 Intermediate Similarity NPD4237 Approved
0.7389 Intermediate Similarity NPD7667 Clinical (unspecified phase)
0.7389 Intermediate Similarity NPD4236 Phase 3
0.7375 Intermediate Similarity NPD4123 Phase 3
0.7375 Intermediate Similarity NPD3536 Discontinued
0.7375 Intermediate Similarity NPD3645 Discontinued
0.7371 Intermediate Similarity NPD7309 Approved
0.736 Intermediate Similarity NPD5525 Clinical (unspecified phase)
0.7358 Intermediate Similarity NPD7124 Phase 2
0.7353 Intermediate Similarity NPD4481 Phase 3
0.7351 Intermediate Similarity NPD5156 Approved
0.7351 Intermediate Similarity NPD5155 Approved
0.7347 Intermediate Similarity NPD2562 Approved
0.7347 Intermediate Similarity NPD2561 Approved
0.7338 Intermediate Similarity NPD2568 Approved
0.7338 Intermediate Similarity NPD4579 Clinical (unspecified phase)
0.7329 Intermediate Similarity NPD2688 Clinical (unspecified phase)
0.7329 Intermediate Similarity NPD6090 Discontinued
0.7326 Intermediate Similarity NPD3933 Discontinued
0.7325 Intermediate Similarity NPD1372 Clinical (unspecified phase)
0.7324 Intermediate Similarity NPD593 Approved
0.7324 Intermediate Similarity NPD595 Approved
0.7322 Intermediate Similarity NPD6612 Phase 2
0.732 Intermediate Similarity NPD2238 Phase 2
0.7314 Intermediate Similarity NPD7281 Phase 3
0.7314 Intermediate Similarity NPD7280 Phase 3

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data