NPASS Compound

Natural Product: NPC64449

Natural Product ID	NPC64449
Common Name ? The InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.	AVKVSPVJSULWPS-JNFWLDLMSA-N
IUPAC Name	n.a.
Synonyms
Synthetic Gene Cluster	n.a.
ChEMBL Identifier	n.a.
PubChem CID	16082069
Chemical Classification	CHEMONTID:0000000 [Organic compounds] [CHEMONTID:0000012] Lipids and lipid-like molecules [CHEMONTID:0000258] Steroids and steroid derivatives [CHEMONTID:0001125] Steroid lactones [CHEMONTID:0001560] Withanolides and derivatives

The Chemical Classification was calculated by Classyfire, a software for chemical taxonomy calculation. Reference: DOI:10.1186/s13321-016-0174-y.

Chemical Representations

RDKit 3D 81 86 0 0 0 0 0 0 0 0999 V2000 -6.5301 3.3721 -0.8493 C 0 0 0 0 0 0 0 0 0 0 0 0 -5.4542 2.4277 -0.3343 C 0 0 0 0 0 0 0 0 0 0 0 0 -5.0629 2.5456 0.9124 C 0 0 0 0 0 0 0 0 0 0 0 0 -5.6997 3.6042 1.7596 C 0 0 0 0 0 0 0 0 0 0 0 0 -4.0361 1.6806 1.4453 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.6946 1.8302 2.6460 O 0 0 0 0 0 0 0 0 0 0 0 0 -3.4681 0.7189 0.6097 O 0 0 0 0 0 0 0 0 0 0 0 0 -3.5115 0.9164 -0.8173 C 0 0 2 0 0 0 0 0 0 0 0 0 -4.8821 1.4102 -1.2135 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.3601 -0.4701 -1.4122 C 0 0 1 0 0 0 0 0 0 0 0 0 -3.3845 -0.4429 -2.9252 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.1319 -1.1705 -0.9352 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.2090 -2.2651 -0.1770 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.8151 -2.7536 0.1545 C 0 0 1 0 0 0 0 0 0 0 0 0 -0.1099 -1.4136 0.1273 C 0 0 1 0 0 0 0 0 0 0 0 0 1.3572 -1.4599 0.0942 C 0 0 2 0 0 0 0 0 0 0 0 0 1.9020 -1.7143 1.4779 C 0 0 0 0 0 0 0 0 0 0 0 0 2.9493 -0.7930 1.9482 C 0 0 2 0 0 0 0 0 0 0 0 0 3.8423 -0.1347 1.0450 C 0 0 2 0 0 0 0 0 0 0 0 0 4.2356 1.2714 1.4179 C 0 0 0 0 0 0 0 0 0 0 0 0 5.2111 1.9307 0.5157 C 0 0 2 0 0 0 0 0 0 0 0 0 5.2519 1.3979 -0.8894 C 0 0 0 0 0 0 0 0 0 0 0 0 4.0085 0.7233 -1.2969 C 0 0 0 0 0 0 0 0 0 0 0 0 3.5206 0.9606 -2.3723 O 0 0 0 0 0 0 0 0 0 0 0 0 3.3658 -0.2405 -0.3914 C 0 0 1 0 0 0 0 0 0 0 0 0 3.7490 -1.6259 -0.9530 C 0 0 0 0 0 0 0 0 0 0 0 0 1.8714 -0.0887 -0.3306 C 0 0 1 0 0 0 0 0 0 0 0 0 1.2271 0.4833 -1.5302 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.2955 0.5129 -1.3041 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.7230 -0.8905 -1.1560 C 0 0 2 0 0 0 0 0 0 0 0 0 -0.2681 -1.6756 -2.3610 C 0 0 0 0 0 0 0 0 0 0 0 0 6.4999 1.9666 1.0122 O 0 0 0 0 0 0 0 0 0 0 0 0 6.8866 3.2864 1.2039 C 0 0 0 0 0 0 0 0 0 0 0 0 4.3451 -1.2335 1.6823 O 0 0 0 0 0 0 0 0 0 0 0 0 -0.5958 -0.6595 1.1793 O 0 0 0 0 0 0 0 0 0 0 0 0 -0.7731 -3.3826 1.3953 O 0 0 0 0 0 0 0 0 0 0 0 0 -0.2571 -4.6569 1.5812 C 0 0 0 0 0 0 0 0 0 0 0 0 0.2044 -5.3091 0.6107 O 0 0 0 0 0 0 0 0 0 0 0 0 -0.2421 -5.2794 2.9515 C 0 0 0 0 0 0 0 0 0 0 0 0 -6.4437 3.4057 -1.9474 H 0 0 0 0 0 0 0 0 0 0 0 0 -7.5398 2.9935 -0.5299 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.3109 4.3434 -0.3636 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.5044 3.3242 2.8149 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.7702 3.7231 1.5413 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.1451 4.5427 1.5590 H 0 0 0 0 0 0 0 0 0 0 0 0 -2.7289 1.6176 -1.1381 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.8474 1.8500 -2.2445 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.5962 0.5389 -1.2864 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.2803 -1.0141 -1.1128 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.4261 -0.5010 -3.3044 H 0 0 0 0 0 0 0 0 0 0 0 0 -2.8196 -1.2561 -3.3849 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.0160 0.5745 -3.2190 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.0855 -2.7872 0.1885 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.4019 -3.3507 -0.6837 H 0 0 0 0 0 0 0 0 0 0 0 0 1.7339 -2.2714 -0.5491 H 0 0 0 0 0 0 0 0 0 0 0 0 1.0418 -1.6443 2.2140 H 0 0 0 0 0 0 0 0 0 0 0 0 2.2449 -2.7716 1.6118 H 0 0 0 0 0 0 0 0 0 0 0 0 2.8656 -0.3854 3.0013 H 0 0 0 0 0 0 0 0 0 0 0 0 4.6587 1.2169 2.4498 H 0 0 0 0 0 0 0 0 0 0 0 0 3.2792 1.8513 1.5040 H 0 0 0 0 0 0 0 0 0 0 0 0 4.8676 3.0033 0.4182 H 0 0 0 0 0 0 0 0 0 0 0 0 5.4434 2.2456 -1.6107 H 0 0 0 0 0 0 0 0 0 0 0 0 6.1492 0.7426 -1.0230 H 0 0 0 0 0 0 0 0 0 0 0 0 3.1996 -1.8476 -1.8804 H 0 0 0 0 0 0 0 0 0 0 0 0 3.7364 -2.4054 -0.1964 H 0 0 0 0 0 0 0 0 0 0 0 0 4.8275 -1.5369 -1.2858 H 0 0 0 0 0 0 0 0 0 0 0 0 1.6272 0.6045 0.5289 H 0 0 0 0 0 0 0 0 0 0 0 0 1.4312 -0.0660 -2.4491 H 0 0 0 0 0 0 0 0 0 0 0 0 1.4919 1.5676 -1.5612 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.4696 1.1783 -0.4611 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.6843 1.0175 -2.2209 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.8985 -2.5733 -2.5025 H 0 0 0 0 0 0 0 0 0 0 0 0 0.7722 -1.9928 -2.3261 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.3570 -0.9740 -3.2411 H 0 0 0 0 0 0 0 0 0 0 0 0 6.2423 3.8267 1.9125 H 0 0 0 0 0 0 0 0 0 0 0 0 7.9201 3.3216 1.6458 H 0 0 0 0 0 0 0 0 0 0 0 0 6.9428 3.8552 0.2511 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.4397 -1.0240 1.5503 H 0 0 0 0 0 0 0 0 0 0 0 0 0.7529 -5.7258 3.1481 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.9903 -6.0870 3.0227 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.3961 -4.5097 3.7314 H 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 2 3 2 0 3 4 1 0 3 5 1 0 5 6 2 0 5 7 1 0 7 8 1 0 8 9 1 0 8 10 1 0 10 11 1 0 10 12 1 0 12 13 2 0 13 14 1 0 14 15 1 0 15 16 1 0 16 17 1 0 17 18 1 0 18 19 1 0 19 20 1 0 20 21 1 0 21 22 1 0 22 23 1 0 23 24 2 0 23 25 1 0 25 26 1 6 25 27 1 0 27 28 1 0 28 29 1 0 29 30 1 0 30 31 1 6 21 32 1 0 32 33 1 0 19 34 1 6 15 35 1 1 14 36 1 0 36 37 1 0 37 38 2 0 37 39 1 0 9 2 1 0 30 12 1 0 30 15 1 0 27 16 1 0 34 18 1 0 25 19 1 0 1 40 1 0 1 41 1 0 1 42 1 0 4 43 1 0 4 44 1 0 4 45 1 0 8 46 1 6 9 47 1 0 9 48 1 0 10 49 1 1 11 50 1 0 11 51 1 0 11 52 1 0 13 53 1 0 14 54 1 6 16 55 1 6 17 56 1 0 17 57 1 0 18 58 1 1 20 59 1 0 20 60 1 0 21 61 1 6 22 62 1 0 22 63 1 0 26 64 1 0 26 65 1 0 26 66 1 0 27 67 1 1 28 68 1 0 28 69 1 0 29 70 1 0 29 71 1 0 31 72 1 0 31 73 1 0 31 74 1 0 33 75 1 0 33 76 1 0 33 77 1 0 35 78 1 0 39 79 1 0 39 80 1 0 39 81 1 0 M END

Standard InCHIKey	AVKVSPVJSULWPS-JNFWLDLMSA-N
Standard InCHI	InChI=1S/C31H42O8/c1-15-10-23(38-27(34)16(15)2)17(3)21-12-26(37-18(4)32)31(35)22-13-25-30(39-25)14-19(36-7)11-24(33)29(30,6)20(22)8-9-28(21,31)5/h12,17,19-20,22-23,25-26,35H,8-11,13-14H2,1-7H3/t17-,19-,20-,22+,23+,25+,26-,28+,29-,30+,31-/m0/s1
SMILES	CC1=C(C)C(=O)O[C@H](C1)[C@@H](C)C1=C[C@@H]([C@]2([C@@H]3C[C@@H]4[C@@]5(C[C@H](CC(=O)[C@]5(C)[C@H]3CC[C@]12C)OC)O4)O)OC(=O)C

Calculated Properties

Physi-Chem Properties

Molecular Weight:	542.29	Volume:	550.533 ? Van der Waals volume.
Dense:	0.985	LogP:	1.227 ? The logarithm of the n-octanol/water distribution coefficients.
logD7.4:	1.709 ? The logarithm of the n-octanol/water distribution coefficient at pH=7.4.	LogS:	-3.279 ? The logarithm of aqueous solubility value.
Rotatable Bonds:	5.0	Rigid Bonds:	31.0
TPSA:	111.66 ? Topological Polar Surface Area.	H-Bond Acceptor:	8.0
H-Bond Donor:	1.0	Rings:	6.0
Heavy Atoms:	8.0

MedChem Properties

QED Drug-Likeness Score:	0.324	GASA:	1.0 ? GASA represents the probability of being difficult to synthesize, ranging from 0 to 1.
Synthetic Accessibility Score:	6.165	Fsp³:	0.774
MCE-18:	154.018 ? MCE-18 stands for medicinal chemistry evolution.MCE-18≥45 is considered a suitable value.	Lipinski Rule-of-5:	Rejected
Pfizer Rule:	Rejected	GSK Rule:	Accepted
Golden Triangle Rule:	Accepted	BMS Rule:	0
Chelating Alert:	0	PAINS Alert:	0
Colloidal aggregators:	0.742	Fluc inhibitor:	0.008 ? The fluc inhibitor value is the probability of being fLuc inhibitors, within the range of 0 to 1.
Blue fluorescence:	0.01 ? The blue fluorescence value is the probability of being blue fluorescence, within the range of 0 to 1	Green fluorescence:	0.002 ? The green fluorescence value is the probability of being green fluorescence, within the range of 0 to 1
Reactive compounds:	0.253	Promiscuous compounds:	0.696

ADMET Properties (ADMETlab3.0)

ADMET: Absorption

Caco-2 Permeability:	-4.998	MDCK Permeability:	-4.677
Pgp-inhibitor:	0.997	Pgp-substrate:	0.291
PAMPA:	0.655 ? The experimental data for Peff was logarithmically transformed (logPeff). Molecules with log Peff values below 2.0 were classified as low-permeability (Category 0), while those with log Peff values exceeding 2.5 were classified as high-permeability (Category 1).	Human Intestinal Absorption (HIA):	0.004
20% Bioavailability (F20%):	0.948	30% Bioavailability (F30%):	0.993
50% Bioavailability (F50%):	1.0

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):	0.015	MRP1:	0.973
Plasma Protein Binding (PPB):	80.575%	Volume Distribution (VD):	0.241
Fu:	20.411% ? The fraction unbound in plasms.	OATP1B1 inhibitor:	1.0
OATP1B3 inhibitor:	1.0	BCRP inhibitor:	0.951
BSEP inhibitor:	1.0

ADMET: Metabolism

CYP1A2-inhibitor:	0.318	CYP1A2-substrate:	0.068
CYP2C19-inhibitor:	0.648	CYP2C19-substrate:	0.005
CYP2C9-inhibitor:	0.001	CYP2C9-substrate:	0.0
CYP2D6-inhibitor:	0.023	CYP2D6-substrate:	0.009
CYP3A4-inhibitor:	0.998	CYP3A4-substrate:	0.986
CYP2B6-substrate:	0.0	CYP2C8-inhibitor:	0.158
HLM stability:	0.177 ? Human liver microsomal (HLM) stability. Category 0: stable+ (HLM > 30 min); Category 1: unstable- (HLM ≤ 30 min). The output value is the probability of human liver microsomal instability, where a value closer to 1 indicates a higher likelihood of instability.

ADMET: Excretion

Clearance (CL):

9.8

Half-life (T1/2):

2.03

ADMET: Toxicity

hERG Blockers:	0.043	hERG Blockers (10um):	0.25
Human Hepatotoxicity (H-HT):	0.792	Drug-induced Liver Injury (DILI):	0.755
AMES Toxicity:	0.665	Rat Oral Acute Toxicity:	0.445
Maximum Recommended Daily Dose:	0.855	Skin Sensitization:	0.991
Carcinogencity:	0.477	Eye Corrosion:	0.001
Eye Irritation:	0.22	Respiratory Toxicity:	0.321
Drug-induced Neurotoxicity:	0.339	Ototoxicity:	0.806
Hematotoxicity:	0.865	Drug-induced Nephrotoxicity:	0.964
Genotoxicity:	0.92	RPMI-8226 Immunitoxicity:	0.263
A549 Cytotoxicity:	0.056	Hek293 Cytotoxicity:	0.093
BCF:	0.506 ? Bioconcentration factors are used for considering secondary poisoning potential and assessing risks to human health via the food chain. The unit is -log10[(mg/L)/(1000*MW)].	IGC50:	3.287 ? 48 hour Tetrahymena pyriformis IGC50. The unit of IGC50 is -log10[(mg/L)/(1000*MW)].
LC50DM:	4.937 ? 48 hour Daphnia magna LC50. The unit of LC50DM is -log10[(mg/L)/(1000*MW)].	LC50FM:	4.25 ? 96 hour fathead minnow LC50. The unit of LC50FM is -log10[(mg/L)/(1000*MW)].

Species Source

Organism ID	Organism Name	Taxonomy Level	Family	SuperKingdom	Isolation Part	Collection Location	Collection Time	Reference
NPO1680	Physalis angulata	Species	Solanaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[17580910]
NPO1680	Physalis angulata	Species	Solanaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[21954931]
NPO1680	Physalis angulata	Species	Solanaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[23270478]
NPO1680	Physalis angulata	Species	Solanaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[25396337]
NPO1680	Physalis angulata	Species	Solanaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[27295506]
NPO1680	Physalis angulata	Species	Solanaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO1680	Physalis angulata	Species	Solanaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]

Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
☉ UNPD: Universal Natural Products Database [PMID: 23638153].
☉ StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
☉ TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
☉ TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
☉ TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
☉ TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
☉ HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
☉ MetaboLights: a metabolomics database [PMID: 27010336].
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

NP Quantity Composition/Concentration

Organism ID	Organism Name	Organism Material Preparation	Organism Part	NP Quantity (Standard)	NP Quantity (Minimum)	NP Quantity (Maximum)	Quantity Unit	Reference

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
☉ DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
☉ PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

Biological Activity

Activity Type	# Activity
IC50	7

Activity Type	# Activity
Non-molecular	7

Molecular-level activity

Target ID	Target Type	Target Name	Target Organism	Activity Type	Activity Relation	Value	Unit	Reference

In vitro activity

Target ID	Target Type	Target Name	Target Organism	Activity Type	Activity Relation	Value	Unit	Reference
NPT20529	Non-molecular	NON-PROTEIN TARGET	n.a.	IC50	=	1150.0	nM	PMID[27295506]
NPT20529	Non-molecular	NON-PROTEIN TARGET	n.a.	IC50	=	2230.0	nM	PMID[27295506]
NPT20529	Non-molecular	NON-PROTEIN TARGET	n.a.	IC50	=	2430.0	nM	PMID[27295506]
NPT20529	Non-molecular	NON-PROTEIN TARGET	n.a.	IC50	=	4700.0	nM	PMID[27295506]
NPT20529	Non-molecular	NON-PROTEIN TARGET	n.a.	IC50	=	7500.0	nM	PMID[27295506]
NPT20529	Non-molecular	NON-PROTEIN TARGET	n.a.	IC50	>	10000.0	nM	PMID[27295506]
NPT20529	Non-molecular	NON-PROTEIN TARGET	n.a.	IC50	=	5560.0	nM	PMID[27295506]

In vivo activity

Target ID	Target Type	Target Name	Target Organism	Activity Type	Activity Relation	Value	Unit	Reference

Experimental ADME

Experiment Model	Experiment Tissue	ADME Type	ADME Relation	ADME Value	ADME Unit	Reference

Experimental Toxicity

Quantitative toxicity

Experiment Model	Experiment Organism	Toxicity Type	Toxicity Relation	Toxicity Value	Toxicity Unit	Reference

Common Abbreviations:
LC: Lethal Concentration; LD: Lethal Dose; LT:Lethal Time; NOAEL: No-observed-adverse-effect Level; BMDL: Benchmark Dose Lower Confidence Limit; BMD: Benchmark Dose; BMC:Benchmark Concentration; LOAEL: Lowest Observed Adverse Effect Level; RfD:Reference Dose; RfC:Reference Concentration; MRL: Minimal Risk Level; MEG: Maximum Exposure Guideline; PAC: Protective Action Criteria

Categorical toxicity labels

Hepatotoxicity	Carcinogenicity	Mutagenicity	Cardiotoxicity	Respiratory Toxicity	Eye Irritation	Endocrine Disruption

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP toxicity records from domain-specific databases. These databases include:
☉ ToxValDB: a curated database that compiles quantitative toxicity values for chemicals from diverse public sources to support toxicological research and risk assessment.
☉ TOXRIC: a comprehensive, free-to-access, online database providing toxicological/feature data. The toxicity labels are retrieved from this database. [PMID: 36400569]

Chemically structural similarity

Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes approximately 50,000 NPs with experimentally-derived bioactivity available in NPASS)

Similarity is measured using the Tanimoto coefficient (Tc) , which compares the binary fingerprints of two molecules. Tc is calculated as the intersection divided by the union of '1' bits in the fingerprints, ranging from 0 to 1, with 1 indicating highest similarity.

● The left chart: Distribution of similarity level between NPC64449 and all remaining natural products in the NPASS database.
● The right table: Most similar natural products (Tc>=0.5 or Top200).

range	Tanimoto Coefficient
0-0.1	17362
0.1-0.2	26633
0.2-0.3	5692
0.3-0.4	122
0.4-0.5	25
0.5-0.6	13
0.6-0.7	6
0.7-0.8	0
0.8-0.85	0
0.85-0.9	1
0.9-0.95	0
0.95-1	0

Similarity Score	Similarity Level	Natural Product ID
0.8904	High Similarity	NPC607882
0.7632	Intermediate Similarity	NPC610379
0.7179	Intermediate Similarity	NPC166213
0.7179	Intermediate Similarity	NPC605398
0.7037	Intermediate Similarity	NPC609088
0.6709	Remote Similarity	NPC601733
0.6707	Remote Similarity	NPC484704
0.6625	Remote Similarity	NPC600975
0.6625	Remote Similarity	NPC602010
0.6341	Remote Similarity	NPC484737
0.6118	Remote Similarity	NPC607675
0.5882	Remote Similarity	NPC484703
0.5833	Remote Similarity	NPC484692
0.5632	Remote Similarity	NPC602882
0.5529	Remote Similarity	NPC484702
0.5349	Remote Similarity	NPC484700
0.5349	Remote Similarity	NPC158319
0.5349	Remote Similarity	NPC484699
0.5349	Remote Similarity	NPC484701
0.5294	Remote Similarity	NPC607253
0.5227	Remote Similarity	NPC62608
0.5227	Remote Similarity	NPC601528
0.5227	Remote Similarity	NPC606764
0.5114	Remote Similarity	NPC600534

Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

● The left chart: Distribution of similarity level between NPC64449 and all drugs/candidates.
● The right table: Most similar clinical/approved drugs (Tc>=0.5 or Top200).

range	Tanimoto Coefficient
0-0.1	6610
0.1-0.2	2390
0.2-0.3	149
0.3-0.4	1
0.4-0.5	0
0.5-0.6	0
0.6-0.7	0
0.7-0.8	0
0.8-0.85	0
0.85-0.9	0
0.9-0.95	0
0.95-1	0

Similarity Score	Similarity Level	Drug ID	Developmental Stage
		NPD

Bioactivity similarity

Similar Natural Products in NPASS

Similarity level is defined by Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
☉ A: chemistry similarity;
☉ B: biological targets similarity;
☉ C: networks similarity;
☉ D: cell-based bioactivity similarity;
☉ E: similarity based on clinical data.
Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity

B: biological targets similarity

C: networks similarity

D: cell-based bioactivity similarity

E: similarity based on clinical data