NPASS Compound

Natural Product: NPC481750

Natural Product ID	NPC481750
Common Name ? The InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.	KYMNUUXORAILER-IRRCNJTOSA-N
IUPAC Name	n.a.
Synonyms
Synthetic Gene Cluster	n.a.
ChEMBL Identifier	n.a.
PubChem CID	n.a.
Chemical Classification	CHEMONTID:0000000 [Organic compounds] [CHEMONTID:0000012] Lipids and lipid-like molecules [CHEMONTID:0000259] Prenol lipids [CHEMONTID:0001551] Diterpenoids [CHEMONTID:0003494] Rhamnofolane and daphnane diterpenoids

The Chemical Classification was calculated by Classyfire, a software for chemical taxonomy calculation. Reference: DOI:10.1186/s13321-016-0174-y.

Chemical Representations

RDKit 3D 77 83 0 0 0 0 0 0 0 0999 V2000 6.9480 -3.0209 -0.3703 C 0 0 0 0 0 0 0 0 0 0 0 0 5.9558 -2.0647 0.2989 C 0 0 0 0 0 0 0 0 0 0 0 0 4.6821 -2.0525 -0.5136 C 0 0 0 0 0 0 0 0 0 0 0 0 3.7155 -1.1456 0.1035 C 0 0 0 0 0 0 0 0 0 0 0 0 4.0314 -0.5299 1.1523 O 0 0 0 0 0 0 0 0 0 0 0 0 2.4425 -0.9064 -0.3939 O 0 0 0 0 0 0 0 0 0 0 0 0 1.5121 -0.0102 0.2266 C 0 0 2 0 0 0 0 0 0 0 0 0 0.3059 -0.7447 0.7350 C 0 0 1 0 0 0 0 0 0 0 0 0 0.4513 -0.9844 2.1971 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.9796 -0.0760 0.2876 C 0 0 2 0 0 0 0 0 0 0 0 0 -2.2250 -0.7035 0.8232 C 0 0 2 0 0 0 0 0 0 0 0 0 -2.3218 -0.8403 2.2736 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.9811 -1.9487 2.5651 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.3102 -2.4790 3.9347 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.3738 -2.6388 1.3449 C 0 0 0 0 0 0 0 0 0 0 0 0 -4.1817 -3.5944 1.3041 O 0 0 0 0 0 0 0 0 0 0 0 0 -2.6364 -1.9884 0.2008 C 0 0 1 0 0 0 0 0 0 0 0 0 -3.5932 -1.7526 -0.9004 C 0 0 1 0 0 0 0 0 0 0 0 0 -3.1935 -0.8749 -1.9925 C 0 0 2 0 0 0 0 0 0 0 0 0 -4.0595 -1.0679 -3.2531 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.6113 -0.2954 -4.2964 O 0 0 0 0 0 0 0 0 0 0 0 0 -2.1151 -0.0189 -2.0220 C 0 0 2 0 0 0 0 0 0 0 0 0 -0.9160 -0.1371 -1.1843 C 0 0 1 0 0 0 0 0 0 0 0 0 0.0607 0.9979 -1.5864 C 0 0 2 0 0 0 0 0 0 0 0 0 1.2361 1.0957 -0.7459 C 0 0 2 0 0 0 0 0 0 0 0 0 2.4464 1.4284 -1.5360 C 0 0 0 0 0 0 0 0 0 0 0 0 2.6099 1.2369 -2.8068 C 0 0 0 0 0 0 0 0 0 0 0 0 3.6306 2.0264 -0.7877 C 0 0 0 0 0 0 0 0 0 0 0 0 0.9646 2.2281 0.0918 O 0 0 0 0 0 0 0 0 0 0 0 0 -0.4228 2.1829 0.1154 C 0 0 1 0 0 0 0 0 0 0 0 0 -0.8945 3.4832 0.7162 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.2420 3.7598 0.8630 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.6634 4.9568 1.4172 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.7533 5.9194 1.8440 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.4170 5.6264 1.6897 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.0063 4.4342 1.1380 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.7072 2.1506 -1.2392 O 0 0 0 0 0 0 0 0 0 0 0 0 -0.9514 1.1904 0.8491 O 0 0 0 0 0 0 0 0 0 0 0 0 -3.2986 0.5781 -1.6473 O 0 0 0 0 0 0 0 0 0 0 0 0 -3.9963 -2.9953 -1.4458 O 0 0 0 0 0 0 0 0 0 0 0 0 -1.6543 -2.8477 -0.1749 O 0 0 0 0 0 0 0 0 0 0 0 0 7.6380 -2.4135 -1.0087 H 0 0 0 0 0 0 0 0 0 0 0 0 6.3891 -3.6881 -1.0290 H 0 0 0 0 0 0 0 0 0 0 0 0 7.5621 -3.5527 0.3839 H 0 0 0 0 0 0 0 0 0 0 0 0 6.3909 -1.0487 0.3311 H 0 0 0 0 0 0 0 0 0 0 0 0 5.7984 -2.3938 1.3339 H 0 0 0 0 0 0 0 0 0 0 0 0 4.3044 -3.0861 -0.6438 H 0 0 0 0 0 0 0 0 0 0 0 0 4.9601 -1.6098 -1.5152 H 0 0 0 0 0 0 0 0 0 0 0 0 2.0547 0.4054 1.0989 H 0 0 0 0 0 0 0 0 0 0 0 0 0.3558 -1.7643 0.2489 H 0 0 0 0 0 0 0 0 0 0 0 0 0.4238 -0.0808 2.8252 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.1051 -1.8549 2.5965 H 0 0 0 0 0 0 0 0 0 0 0 0 1.5327 -1.3244 2.3080 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.0427 0.0512 0.5861 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.9418 -0.1783 3.0192 H 0 0 0 0 0 0 0 0 0 0 0 0 -2.5759 -3.2412 4.2624 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.2465 -1.6474 4.6906 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.3592 -2.8314 3.9850 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.5427 -1.3454 -0.4393 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.1224 -0.9827 -3.0266 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.8719 -2.1420 -3.5479 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.6233 -0.7597 -5.1715 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.8307 0.3445 -3.0733 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.3679 -1.0605 -1.5475 H 0 0 0 0 0 0 0 0 0 0 0 0 0.1537 0.9761 -2.6715 H 0 0 0 0 0 0 0 0 0 0 0 0 1.8703 0.8050 -3.4435 H 0 0 0 0 0 0 0 0 0 0 0 0 3.5382 1.5183 -3.2907 H 0 0 0 0 0 0 0 0 0 0 0 0 3.7648 3.0698 -1.1079 H 0 0 0 0 0 0 0 0 0 0 0 0 3.4499 2.0154 0.3036 H 0 0 0 0 0 0 0 0 0 0 0 0 4.5160 1.4116 -0.9888 H 0 0 0 0 0 0 0 0 0 0 0 0 -2.9445 3.0218 0.5360 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.7098 5.1993 1.5436 H 0 0 0 0 0 0 0 0 0 0 0 0 -2.1089 6.8458 2.2733 H 0 0 0 0 0 0 0 0 0 0 0 0 0.2996 6.3604 2.0147 H 0 0 0 0 0 0 0 0 0 0 0 0 1.0641 4.2173 1.0228 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.5396 -3.7447 -0.9937 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.6211 -3.0687 -1.1399 H 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 2 3 1 0 3 4 1 0 4 5 2 0 4 6 1 0 6 7 1 0 7 8 1 0 8 9 1 0 8 10 1 0 10 11 1 0 11 12 1 0 12 13 2 0 13 14 1 0 13 15 1 0 15 16 2 0 15 17 1 0 17 18 1 0 18 19 1 0 19 20 1 6 20 21 1 0 19 22 1 0 22 23 1 0 23 24 1 0 24 25 1 0 25 26 1 6 26 27 2 0 26 28 1 0 25 29 1 0 29 30 1 0 30 31 1 1 31 32 2 0 32 33 1 0 33 34 2 0 34 35 1 0 35 36 2 0 30 37 1 0 30 38 1 0 22 39 1 0 18 40 1 0 17 41 1 6 25 7 1 0 36 31 1 0 23 10 1 0 37 24 1 0 10 38 1 6 17 11 1 0 39 19 1 0 1 42 1 0 1 43 1 0 1 44 1 0 2 45 1 0 2 46 1 0 3 47 1 0 3 48 1 0 7 49 1 1 8 50 1 6 9 51 1 0 9 52 1 0 9 53 1 0 11 54 1 6 12 55 1 0 14 56 1 0 14 57 1 0 14 58 1 0 18 59 1 1 20 60 1 0 20 61 1 0 21 62 1 0 22 63 1 6 23 64 1 1 24 65 1 6 27 66 1 0 27 67 1 0 28 68 1 0 28 69 1 0 28 70 1 0 32 71 1 0 33 72 1 0 34 73 1 0 35 74 1 0 36 75 1 0 40 76 1 0 41 77 1 0 M END

Standard InCHIKey	KYMNUUXORAILER-IRRCNJTOSA-N
Standard InCHI	InChI=1S/C31H36O10/c1-6-10-20(33)37-23-17(5)30-19-13-16(4)22(34)28(19,36)26(35)27(14-32)24(38-27)21(30)25-29(23,15(2)3)40-31(39-25,41-30)18-11-8-7-9-12-18/h7-9,11-13,17,19,21,23-26,32,35-36H,2,6,10,14H2,1,3-5H3/t17-,19-,21+,23-,24+,25-,26-,27+,28-,29+,30+,31-/m1/s1
SMILES	CCCC(=O)O[C@@H]1[C@@H](C)[C@]23[C@@H]4C=C(C)C(=O)[C@]4([C@@H]([C@]4(CO)[C@H]([C@H]2[C@@H]2[C@@]1(C(=C)C)O[C@@](c1ccccc1)(O2)O3)O4)O)O

Calculated Properties

Physi-Chem Properties

Molecular Weight:	568.23	Volume:	554.284 ? Van der Waals volume.
Dense:	1.025	LogP:	2.442 ? The logarithm of the n-octanol/water distribution coefficients.
logD7.4:	2.753 ? The logarithm of the n-octanol/water distribution coefficient at pH=7.4.	LogS:	-3.756 ? The logarithm of aqueous solubility value.
Rotatable Bonds:	7.0	Rigid Bonds:	33.0
TPSA:	144.28 ? Topological Polar Surface Area.	H-Bond Acceptor:	10.0
H-Bond Donor:	3.0	Rings:	7.0
Heavy Atoms:	10.0

MedChem Properties

QED Drug-Likeness Score:	0.263	GASA:	1.0 ? GASA represents the probability of being difficult to synthesize, ranging from 0 to 1.
Synthetic Accessibility Score:	6.558	Fsp³:	0.613
MCE-18:	167.04 ? MCE-18 stands for medicinal chemistry evolution.MCE-18≥45 is considered a suitable value.	Lipinski Rule-of-5:	Rejected
Pfizer Rule:	Rejected	GSK Rule:	Accepted
Golden Triangle Rule:	Accepted	BMS Rule:	0
Chelating Alert:	0	PAINS Alert:	0
Colloidal aggregators:	0.378	Fluc inhibitor:	0.003 ? The fluc inhibitor value is the probability of being fLuc inhibitors, within the range of 0 to 1.
Blue fluorescence:	0.006 ? The blue fluorescence value is the probability of being blue fluorescence, within the range of 0 to 1	Green fluorescence:	0.006 ? The green fluorescence value is the probability of being green fluorescence, within the range of 0 to 1
Reactive compounds:	0.103	Promiscuous compounds:	0.11

ADMET Properties (ADMETlab3.0)

ADMET: Absorption

Caco-2 Permeability:	-5.212	MDCK Permeability:	-4.824
Pgp-inhibitor:	0.07	Pgp-substrate:	0.217
PAMPA:	0.007 ? The experimental data for Peff was logarithmically transformed (logPeff). Molecules with log Peff values below 2.0 were classified as low-permeability (Category 0), while those with log Peff values exceeding 2.5 were classified as high-permeability (Category 1).	Human Intestinal Absorption (HIA):	0.0
20% Bioavailability (F20%):	0.013	30% Bioavailability (F30%):	0.904
50% Bioavailability (F50%):	1.0

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):	0.999	MRP1:	0.949
Plasma Protein Binding (PPB):	75.679%	Volume Distribution (VD):	-0.204
Fu:	20.039% ? The fraction unbound in plasms.	OATP1B1 inhibitor:	0.78
OATP1B3 inhibitor:	0.195	BCRP inhibitor:	0.045
BSEP inhibitor:	0.996

ADMET: Metabolism

CYP1A2-inhibitor:	0.0	CYP1A2-substrate:	0.394
CYP2C19-inhibitor:	0.0	CYP2C19-substrate:	0.075
CYP2C9-inhibitor:	0.0	CYP2C9-substrate:	0.002
CYP2D6-inhibitor:	0.0	CYP2D6-substrate:	0.001
CYP3A4-inhibitor:	0.054	CYP3A4-substrate:	0.032
CYP2B6-substrate:	0.0	CYP2C8-inhibitor:	0.843
HLM stability:	0.98 ? Human liver microsomal (HLM) stability. Category 0: stable+ (HLM > 30 min); Category 1: unstable- (HLM ≤ 30 min). The output value is the probability of human liver microsomal instability, where a value closer to 1 indicates a higher likelihood of instability.

ADMET: Excretion

Clearance (CL):

5.148

Half-life (T1/2):

0.731

ADMET: Toxicity

hERG Blockers:	0.044	hERG Blockers (10um):	0.226
Human Hepatotoxicity (H-HT):	0.544	Drug-induced Liver Injury (DILI):	0.177
AMES Toxicity:	0.785	Rat Oral Acute Toxicity:	0.803
Maximum Recommended Daily Dose:	0.786	Skin Sensitization:	1.0
Carcinogencity:	0.248	Eye Corrosion:	0.005
Eye Irritation:	0.807	Respiratory Toxicity:	0.369
Drug-induced Neurotoxicity:	0.39	Ototoxicity:	0.758
Hematotoxicity:	0.627	Drug-induced Nephrotoxicity:	0.553
Genotoxicity:	0.551	RPMI-8226 Immunitoxicity:	0.323
A549 Cytotoxicity:	0.522	Hek293 Cytotoxicity:	0.703
BCF:	0.868 ? Bioconcentration factors are used for considering secondary poisoning potential and assessing risks to human health via the food chain. The unit is -log10[(mg/L)/(1000*MW)].	IGC50:	3.501 ? 48 hour Tetrahymena pyriformis IGC50. The unit of IGC50 is -log10[(mg/L)/(1000*MW)].
LC50DM:	5.278 ? 48 hour Daphnia magna LC50. The unit of LC50DM is -log10[(mg/L)/(1000*MW)].	LC50FM:	4.532 ? 96 hour fathead minnow LC50. The unit of LC50FM is -log10[(mg/L)/(1000*MW)].

Species Source

Organism ID	Organism Name	Taxonomy Level	Family	SuperKingdom	Isolation Part	Collection Location	Collection Time	Reference
NPO9756	Daphne genkwa	Species	Thymelaeaceae	Eukaryota	n.a.	flower	n.a.	PMID[21916433]
NPO9756	Daphne genkwa	Species	Thymelaeaceae	Eukaryota	flower buds	n.a.	n.a.	PMID[23558238]
NPO9756	Daphne genkwa	Species	Thymelaeaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[27228307]
NPO9756	Daphne genkwa	Species	Thymelaeaceae	Eukaryota	Roots	n.a.	n.a.	PMID[31150241]
NPO9756	Daphne genkwa	Species	Thymelaeaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[31860304]
NPO9756	Daphne genkwa	Species	Thymelaeaceae	Eukaryota	n.a.	n.a.	n.a.	PMID[32223193]
NPO9756	Daphne genkwa	Species	Thymelaeaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO9756	Daphne genkwa	Species	Thymelaeaceae	Eukaryota	n.a.	n.a.	n.a.	Database[HerDing]
NPO9756	Daphne genkwa	Species	Thymelaeaceae	Eukaryota	n.a.	n.a.	n.a.	Database[TCMID]
NPO9756	Daphne genkwa	Species	Thymelaeaceae	Eukaryota	n.a.	n.a.	n.a.	Database[TCM_Taiwan]
NPO9756	Daphne genkwa	Species	Thymelaeaceae	Eukaryota	n.a.	n.a.	n.a.	Database[TM-MC]
NPO9756	Daphne genkwa	Species	Thymelaeaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]

Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
☉ UNPD: Universal Natural Products Database [PMID: 23638153].
☉ StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
☉ TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
☉ TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
☉ TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
☉ TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
☉ HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
☉ MetaboLights: a metabolomics database [PMID: 27010336].
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

NP Quantity Composition/Concentration

Organism ID	Organism Name	Organism Material Preparation	Organism Part	NP Quantity (Standard)	NP Quantity (Minimum)	NP Quantity (Maximum)	Quantity Unit	Reference

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
☉ DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
☉ PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

Biological Activity

Activity Type	# Activity
IC50	3

Activity Type	# Activity
Cell line	3

Molecular-level activity

Target ID	Target Type	Target Name	Target Organism	Activity Type	Activity Relation	Value	Unit	Reference

In vitro activity

Target ID	Target Type	Target Name	Target Organism	Activity Type	Activity Relation	Value	Unit	Reference
NPT323	Cell line	SW-620	Homo sapiens	IC50	>	10000.0	nM	PMID[32223193]
NPT2170	Cell line	RKO	Homo sapiens	IC50	>	10000.0	nM	PMID[32223193]
NPT114	Cell line	LoVo	Homo sapiens	IC50	>	10000.0	nM	PMID[32223193]

In vivo activity

Target ID	Target Type	Target Name	Target Organism	Activity Type	Activity Relation	Value	Unit	Reference

Experimental ADME

Experiment Model	Experiment Tissue	ADME Type	ADME Relation	ADME Value	ADME Unit	Reference

Experimental Toxicity

Quantitative toxicity

Experiment Model	Experiment Organism	Toxicity Type	Toxicity Relation	Toxicity Value	Toxicity Unit	Reference

Common Abbreviations:
LC: Lethal Concentration; LD: Lethal Dose; LT:Lethal Time; NOAEL: No-observed-adverse-effect Level; BMDL: Benchmark Dose Lower Confidence Limit; BMD: Benchmark Dose; BMC:Benchmark Concentration; LOAEL: Lowest Observed Adverse Effect Level; RfD:Reference Dose; RfC:Reference Concentration; MRL: Minimal Risk Level; MEG: Maximum Exposure Guideline; PAC: Protective Action Criteria

Categorical toxicity labels

Hepatotoxicity	Carcinogenicity	Mutagenicity	Cardiotoxicity	Respiratory Toxicity	Eye Irritation	Endocrine Disruption

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP toxicity records from domain-specific databases. These databases include:
☉ ToxValDB: a curated database that compiles quantitative toxicity values for chemicals from diverse public sources to support toxicological research and risk assessment.
☉ TOXRIC: a comprehensive, free-to-access, online database providing toxicological/feature data. The toxicity labels are retrieved from this database. [PMID: 36400569]

Chemically structural similarity

Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes approximately 50,000 NPs with experimentally-derived bioactivity available in NPASS)

Similarity is measured using the Tanimoto coefficient (Tc) , which compares the binary fingerprints of two molecules. Tc is calculated as the intersection divided by the union of '1' bits in the fingerprints, ranging from 0 to 1, with 1 indicating highest similarity.

● The left chart: Distribution of similarity level between NPC481750 and all remaining natural products in the NPASS database.
● The right table: Most similar natural products (Tc>=0.5 or Top200).

range	Tanimoto Coefficient
0-0.1	8196
0.1-0.2	39614
0.2-0.3	1927
0.3-0.4	45
0.4-0.5	48
0.5-0.6	14
0.6-0.7	2
0.7-0.8	0
0.8-0.85	1
0.85-0.9	2
0.9-0.95	0
0.95-1	0

Similarity Score	Similarity Level	Natural Product ID
0.8904	High Similarity	NPC181924
0.8667	High Similarity	NPC481751
0.8025	Intermediate Similarity	NPC275477
0.7976	Intermediate Similarity	NPC156682
0.7976	Intermediate Similarity	NPC49297
0.775	Intermediate Similarity	NPC61891
0.7308	Intermediate Similarity	NPC146310
0.6667	Remote Similarity	NPC322420
0.6627	Remote Similarity	NPC154675
0.5909	Remote Similarity	NPC481755
0.5909	Remote Similarity	NPC66193
0.5778	Remote Similarity	NPC40138
0.5556	Remote Similarity	NPC326328
0.5376	Remote Similarity	NPC39509
0.5263	Remote Similarity	NPC605479
0.5248	Remote Similarity	NPC130886
0.5248	Remote Similarity	NPC486153
0.5158	Remote Similarity	NPC481744
0.5158	Remote Similarity	NPC481743
0.5146	Remote Similarity	NPC101786
0.51	Remote Similarity	NPC164150
0.51	Remote Similarity	NPC481754
0.505	Remote Similarity	NPC486154

Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

● The left chart: Distribution of similarity level between NPC481750 and all drugs/candidates.
● The right table: Most similar clinical/approved drugs (Tc>=0.5 or Top200).

range	Tanimoto Coefficient
0-0.1	3463
0.1-0.2	5598
0.2-0.3	88
0.3-0.4	1
0.4-0.5	0
0.5-0.6	0
0.6-0.7	0
0.7-0.8	0
0.8-0.85	0
0.85-0.9	0
0.9-0.95	0
0.95-1	0

Similarity Score	Similarity Level	Drug ID	Developmental Stage
		NPD

Bioactivity similarity

Similar Natural Products in NPASS

Similarity level is defined by Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
☉ A: chemistry similarity;
☉ B: biological targets similarity;
☉ C: networks similarity;
☉ D: cell-based bioactivity similarity;
☉ E: similarity based on clinical data.
Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity

B: biological targets similarity

C: networks similarity

D: cell-based bioactivity similarity

E: similarity based on clinical data