Natural Product: NPC44155

Natural Product IDNPC44155
Common Name
?
The InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
QXNWZXMBUKUYMD-QQGJMDNJSA-N
IUPAC Name n.a.
Synonyms
Synthetic Gene Cluster n.a.
ChEMBL Identifier n.a.
PubChem CID 5281236
Chemical Classification
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000012] Lipids and lipid-like molecules
      • [CHEMONTID:0000259] Prenol lipids
        • [CHEMONTID:0001554] Tetraterpenoids
          • [CHEMONTID:0001277] Carotenoids
            • [CHEMONTID:0001410] Xanthophylls

The Chemical Classification was calculated by Classyfire, a software for chemical taxonomy calculation. Reference: DOI:10.1186/s13321-016-0174-y.

  Chemical Representations

Standard InCHIKey QXNWZXMBUKUYMD-QQGJMDNJSA-N
Standard InCHI InChI=1S/C40H54O/c1-30(18-13-20-32(3)23-25-36-34(5)22-15-28-39(36,7)8)16-11-12-17-31(2)19-14-21-33(4)24-26-37-35(6)38(41)27-29-40(37,9)10/h11-14,16-21,23-26H,15,22,27-29H2,1-10H3/b12-11+,18-13+,19-14+,25-23+,26-24+,30-16+,31-17+,32-20+,33-21+
SMILES C/C(=CC=CC=C(/C)C=CC=C(/C)C=CC1=C(C)C(=O)CCC1(C)C)/C=C/C=C(C)/C=C/C1=C(C)CCCC1(C)C

  Calculated Properties

Physi-Chem Properties

MedChem Properties

ADMET Properties (ADMETlab3.0)

ADMET: Absorption

ADMET: Distribution

ADMET: Metabolism

ADMET: Excretion

ADMET: Toxicity

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO3139 Aphanizomenon flos-aquae Species Aphanizomenonaceae Bacteria n.a. n.a. n.a. PMID[11000037]
NPO369 Ochrocarpos punctatus Species Clusiaceae Eukaryota n.a. bark n.a. PMID[12141854]
NPO14157 Aphis fabae Species Aphididae Eukaryota n.a. n.a. n.a. PMID[13445686]
NPO41730 Myxococcus xanthus DK1622 [n.a.] Strain Myxococcaceae Bacteria n.a. n.a. n.a. PMID[30995838]
NPO41730 Myxococcus xanthus DK1622 [n.a.] Strain Myxococcaceae Bacteria n.a. n.a. n.a. PMID[34757714]
NPO3139 Aphanizomenon flos-aquae Species Aphanizomenonaceae Bacteria n.a. n.a. n.a. PMID[9428164]
NPO41730 Myxococcus xanthus DK1622 [n.a.] Strain Myxococcaceae Bacteria n.a. n.a. n.a. Database[COCONUT]
NPO15508 Ambrosia cordifolia Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO3139 Aphanizomenon flos-aquae Species Aphanizomenonaceae Bacteria n.a. n.a. n.a. Database[COCONUT]
NPO14157 Aphis fabae Species Aphididae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO18185 Bradyrhizobium lupini Species Bradyrhizobiaceae Bacteria n.a. n.a. n.a. Database[COCONUT]
NPO5055 Candida parapsilosis Species Debaryomycetaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO16276 Croton hieronymi Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO19977 Desmanthus illinoensis Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO16841 Elsholtzia bodinieri Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO12128 Ipomoea purpurea Species Convolvulaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO911 Sistotrema raduloides Species Corticiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO11854 Romalea microptera Species Romaleidae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO584 Rabdosia setschwanensis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO4232 Rabdosia coetsoides Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO15753 Pterocarpus angolensis Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO12412 Ormosia cinerea Species Limoniidae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO369 Ochrocarpos punctatus Species Clusiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO9159 Narcissus serotinus Species Amaryllidaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO1443 Monomorium fieldi Species Formicidae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO20749 Lychnophora uniflora Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO22787 Karwinskia mollis Species Rhamnaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO14714 Equisetum silvaticum Species Equisetaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO15753 Pterocarpus angolensis Species Fabaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO11854 Romalea microptera Species Romaleidae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO4232 Rabdosia coetsoides Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO4232 Rabdosia coetsoides Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO19977 Desmanthus illinoensis Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO12128 Ipomoea purpurea Species Convolvulaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO15753 Pterocarpus angolensis Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO16841 Elsholtzia bodinieri Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO12128 Ipomoea purpurea Species Convolvulaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO20749 Lychnophora uniflora Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19977 Desmanthus illinoensis Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO911 Sistotrema raduloides Species Corticiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16841 Elsholtzia bodinieri Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14157 Aphis fabae Species Aphididae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14714 Equisetum silvaticum Species Equisetaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5055 Candida parapsilosis Species Debaryomycetaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15753 Pterocarpus angolensis Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16276 Croton hieronymi Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12128 Ipomoea purpurea Species Convolvulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9159 Narcissus serotinus Species Amaryllidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4232 Rabdosia coetsoides Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3139 Aphanizomenon flos-aquae Species Aphanizomenonaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO11854 Romalea microptera Species Romaleidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO369 Ochrocarpos punctatus Species Clusiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15508 Ambrosia cordifolia Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18185 Bradyrhizobium lupini Species Bradyrhizobiaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO584 Rabdosia setschwanensis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12412 Ormosia cinerea Species Limoniidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22787 Karwinskia mollis Species Rhamnaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1443 Monomorium fieldi Species Formicidae Eukaryota n.a. n.a. n.a. Database[UNPD]

Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



  NP Quantity Composition/Concentration

Organism ID Organism Name Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



 Biological Activity

Molecular-level activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference

In vitro activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference

In vivo activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference





 Experimental ADME

Experiment Model Experiment Tissue ADME Type ADME Relation ADME Value ADME Unit Reference





 Experimental Toxicity

Quantitative toxicity

Experiment Model Experiment Organism Toxicity Type Toxicity Relation Toxicity Value Toxicity Unit Reference

Common Abbreviations:
LC: Lethal Concentration; LD: Lethal Dose; LT:Lethal Time; NOAEL: No-observed-adverse-effect Level; BMDL: Benchmark Dose Lower Confidence Limit; BMD: Benchmark Dose; BMC:Benchmark Concentration; LOAEL: Lowest Observed Adverse Effect Level; RfD:Reference Dose; RfC:Reference Concentration; MRL: Minimal Risk Level; MEG: Maximum Exposure Guideline; PAC: Protective Action Criteria

Categorical toxicity labels

Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption
Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP toxicity records from domain-specific databases. These databases include:
ToxValDB: a curated database that compiles quantitative toxicity values for chemicals from diverse public sources to support toxicological research and risk assessment.
TOXRIC: a comprehensive, free-to-access, online database providing toxicological/feature data. The toxicity labels are retrieved from this database. [PMID: 36400569]


  Chemically structural similarity

Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes approximately 50,000 NPs with experimentally-derived bioactivity available in NPASS)

Similarity is measured using the Tanimoto coefficient (Tc) , which compares the binary fingerprints of two molecules. Tc is calculated as the intersection divided by the union of '1' bits in the fingerprints, ranging from 0 to 1, with 1 indicating highest similarity.

●  The left chart: Distribution of similarity level between NPC44155 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.5 or Top200).

Similarity Score Similarity Level Natural Product ID
0.8421 Intermediate Similarity NPC4638
0.7105 Intermediate Similarity NPC17810
0.7105 Intermediate Similarity NPC606095
0.6667 Remote Similarity NPC22019
0.6667 Remote Similarity NPC281986
0.6667 Remote Similarity NPC321568
0.5778 Remote Similarity NPC55412
0.5778 Remote Similarity NPC249645
0.5714 Remote Similarity NPC226066
0.56 Remote Similarity NPC254886
0.5306 Remote Similarity NPC329416
0.5306 Remote Similarity NPC317025
0.5306 Remote Similarity NPC326645
0.5306 Remote Similarity NPC317177
0.5208 Remote Similarity NPC74086
0.5091 Remote Similarity NPC228978
0.5091 Remote Similarity NPC600770

Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC44155 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.5 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.7105 Intermediate Similarity NPD8262 Phase 4
0.5778 Remote Similarity NPD4219 Phase 4
0.5714 Remote Similarity NPD5325 Clinical (unspecified phase)
0.5306 Remote Similarity NPD4191 Approved
0.5306 Remote Similarity NPD4192 Phase 4
0.5306 Remote Similarity NPD4193 Phase 4
0.5306 Remote Similarity NPD4194 Phase 4
0.5208 Remote Similarity NPD8259 Clinical (unspecified phase)
0.5091 Remote Similarity NPD8039 Phase 4

Bioactivity similarity

  Bioactivity similarity

Similar Natural Products in NPASS

Similarity level is defined by Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.
Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data