Natural Product: NPC284948

Natural Product IDNPC284948
Common Name
?
The InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
Cynarin
IUPAC Name (1R,3R,4S,5R)-1,3-bis[[(E)-3-(3,4-dihydroxyphenyl)prop-2-enoyl]oxy]-4,5-dihydroxycyclohexane-1-carboxylic acid
Synonyms Cynaricine; NSC-91529
Synthetic Gene Cluster n.a.
ChEMBL Identifier CHEMBL487258
PubChem CID 5281769
Chemical Classification
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0004603] Organic oxygen compounds
      • [CHEMONTID:0000323] Organooxygen compounds
        • [CHEMONTID:0000129] Alcohols and polyols
          • [CHEMONTID:0001292] Cyclic alcohols and derivatives
            • [CHEMONTID:0002509] Cyclitols and derivatives
              • [CHEMONTID:0002512] Quinic acids and derivatives

The Chemical Classification was calculated by Classyfire, a software for chemical taxonomy calculation. Reference: DOI:10.1186/s13321-016-0174-y.

  Chemical Representations

Standard InCHIKey YDDUMTOHNYZQPO-RVXRWRFUSA-N
Standard InCHI InChI=1S/C25H24O12/c26-15-5-1-13(9-17(15)28)3-7-21(31)36-20-12-25(24(34)35,11-19(30)23(20)33)37-22(32)8-4-14-2-6-16(27)18(29)10-14/h1-10,19-20,23,26-30,33H,11-12H2,(H,34,35)/b7-3+,8-4+/t19-,20-,23+,25-/m1/s1
SMILES O=C(O[C@@H]1C[C@](OC(=O)/C=C/c2ccc(c(c2)O)O)(C[C@H]([C@@H]1O)O)C(=O)O)/C=C/c1ccc(c(c1)O)O

  Calculated Properties

Physi-Chem Properties

Molecular Weight:   516.13 Volume:   491.768
?
Van der Waals volume.
Dense:   1.05 LogP:   1.427
?
The logarithm of the n-octanol/water distribution coefficients.
logD7.4:   1.554
?
The logarithm of the n-octanol/water distribution coefficient at pH=7.4.
LogS:   -3.717
?
The logarithm of aqueous solubility value.
Rotatable Bonds:   9.0 Rigid Bonds:   23.0
TPSA:   211.28
?
Topological Polar Surface Area.
H-Bond Acceptor:   12.0
H-Bond Donor:   7.0 Rings:   3.0
Heavy Atoms:   12.0

MedChem Properties

QED Drug-Likeness Score:   0.156 GASA:   0.0
?
GASA represents the probability of being difficult to synthesize, ranging from 0 to 1.
Synthetic Accessibility Score:   4.164 Fsp3:   0.24
MCE-18:   81.29
?
MCE-18 stands for medicinal chemistry evolution.MCE-18≥45 is considered a suitable value.
Lipinski Rule-of-5:   Accepted
Pfizer Rule:   Rejected GSK Rule:   Accepted
Golden Triangle Rule:   Accepted BMS Rule:   0
Chelating Alert:   1 PAINS Alert:   1
Colloidal aggregators:   0.829 Fluc inhibitor:   0.999
?
The fluc inhibitor value is the probability of being fLuc inhibitors, within the range of 0 to 1.
Blue fluorescence:   0.22
?
The blue fluorescence value is the probability of being blue fluorescence, within the range of 0 to 1
Green fluorescence:   0.637
?
The green fluorescence value is the probability of being green fluorescence, within the range of 0 to 1
Reactive compounds:   0.453 Promiscuous compounds:   0.318

ADMET Properties (ADMETlab3.0)

ADMET: Absorption

Caco-2 Permeability:   -6.581 MDCK Permeability:   -5.119
Pgp-inhibitor:   0.0 Pgp-substrate:   0.003
PAMPA:   1.0
?
The experimental data for Peff was logarithmically transformed (logPeff). Molecules with log Peff values below 2.0 were classified as low-permeability (Category 0), while those with log Peff values exceeding 2.5 were classified as high-permeability (Category 1).
Human Intestinal Absorption (HIA):   0.325
20% Bioavailability (F20%):   1.0 30% Bioavailability (F30%):   1.0
50% Bioavailability (F50%):   1.0

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):   0.0 MRP1:   0.132
Plasma Protein Binding (PPB):   74.75% Volume Distribution (VD):   0.105
Fu: 21.457%
?
The fraction unbound in plasms.
OATP1B1 inhibitor:   0.999
OATP1B3 inhibitor:   1.0 BCRP inhibitor:   0.0
BSEP inhibitor:   0.005

ADMET: Metabolism

CYP1A2-inhibitor:   0.0 CYP1A2-substrate:   0.0
CYP2C19-inhibitor:   0.0 CYP2C19-substrate:   0.0
CYP2C9-inhibitor:   0.0 CYP2C9-substrate:   0.0
CYP2D6-inhibitor:   0.0 CYP2D6-substrate:   0.0
CYP3A4-inhibitor:   0.0 CYP3A4-substrate:   0.859
CYP2B6-substrate:   0.0 CYP2C8-inhibitor:   1.0
HLM stability:   0.0
?
Human liver microsomal (HLM) stability. Category 0: stable+ (HLM > 30 min); Category 1: unstable- (HLM ≤ 30 min). The output value is the probability of human liver microsomal instability, where a value closer to 1 indicates a higher likelihood of instability.

ADMET: Excretion

Clearance (CL):  7.312 Half-life (T1/2):  2.452

ADMET: Toxicity

hERG Blockers:  0.049 hERG Blockers (10um):  0.198
Human Hepatotoxicity (H-HT):  0.475 Drug-induced Liver Injury (DILI):  0.694
AMES Toxicity:  0.67 Rat Oral Acute Toxicity:  0.07
Maximum Recommended Daily Dose:  0.843 Skin Sensitization:  1.0
Carcinogencity:  0.24 Eye Corrosion:  0.001
Eye Irritation:  0.578 Respiratory Toxicity:  0.049
Drug-induced Neurotoxicity:  0.002 Ototoxicity:  0.901
Hematotoxicity:  0.013 Drug-induced Nephrotoxicity:  0.442
Genotoxicity:  0.963 RPMI-8226 Immunitoxicity:  0.011
A549 Cytotoxicity:  0.845 Hek293 Cytotoxicity:  0.137
BCF:   0.668
?
Bioconcentration factors are used for considering secondary poisoning potential and assessing risks to human health via the food chain. The unit is -log10[(mg/L)/(1000*MW)].
IGC50:   3.431
?
48 hour Tetrahymena pyriformis IGC50. The unit of IGC50 is -log10[(mg/L)/(1000*MW)].
LC50DM:   4.782
?
48 hour Daphnia magna LC50. The unit of LC50DM is -log10[(mg/L)/(1000*MW)].
LC50FM:   4.532
?
96 hour fathead minnow LC50. The unit of LC50FM is -log10[(mg/L)/(1000*MW)].

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO11144 Centella asiatica Species Apiaceae Eukaryota n.a. n.a. n.a. PMID[ 17560738]
NPO28011 Swertia japonica Species Gentianaceae Eukaryota n.a. n.a. n.a. DOI[10.1007/BF02675902]
NPO9865 Cichorium intybus Species Asteraceae Eukaryota n.a. n.a. n.a. DOI[10.1007/s11627-001-0052-8]
NPO11144 Centella asiatica Species Apiaceae Eukaryota n.a. n.a. n.a. DOI[10.1007/s11816-015-0350-y]
NPO20440 Chrysanthemum x morifolium Species Asteraceae Eukaryota Flowers n.a. n.a. DOI[10.1016/j.foodchem.2009.03.042]
NPO22175 Perovskia abrotanoides Species Lamiaceae Eukaryota n.a. n.a. n.a. DOI[10.1016/j.indcrop.2015.01.015]
NPO28276 Artemisia argyi Species Asteraceae Eukaryota n.a. n.a. n.a. DOI[10.1016/j.jep.2005.01.054]
NPO28295 Foeniculum vulgare Species Apiaceae Eukaryota n.a. leaf n.a. DOI[10.1016/S0031-9422(00)94055-X]
NPO28011 Swertia japonica Species Gentianaceae Eukaryota n.a. n.a. n.a. DOI[10.1055/s-2008-1074888]
NPO28011 Swertia japonica Species Gentianaceae Eukaryota n.a. n.a. n.a. DOI[10.1248/cpb.30.4088]
NPO20440 Chrysanthemum x morifolium Species Asteraceae Eukaryota Flowers n.a. n.a. DOI[10.3136/fstr.15.499]
NPO28295 Foeniculum vulgare Species Apiaceae Eukaryota n.a. flower n.a. DOI[10.3390/70200245]
NPO20440 Chrysanthemum x morifolium Species Asteraceae Eukaryota Flowers n.a. n.a. DOI[10.5897/AJB10.140]
NPO20440 Chrysanthemum x morifolium Species Asteraceae Eukaryota Flowers n.a. n.a. DOI[10.5897/AJB2010.000-3252]
NPO22258 Chrysanthemum indicum Species Asteraceae Eukaryota Flowers n.a. n.a. DOI[10.5897/JMPR.9000078]
NPO28011 Swertia japonica Species Gentianaceae Eukaryota n.a. n.a. n.a. PMID[10353265]
NPO20081 Mycobacterium tuberculosis Species Mycobacteriaceae Bacteria n.a. n.a. n.a. PMID[10553679]
NPO22175 Perovskia abrotanoides Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[11720520]
NPO20081 Mycobacterium tuberculosis Species Mycobacteriaceae Bacteria n.a. n.a. n.a. PMID[12055308]
NPO22258 Chrysanthemum indicum Species Asteraceae Eukaryota n.a. flower n.a. PMID[12130858]
NPO20081 Mycobacterium tuberculosis Species Mycobacteriaceae Bacteria n.a. n.a. n.a. PMID[15070765]
NPO28035 Streptomyces fumanus Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[15730262]
NPO14484 Echinacea purpurea Species Asteraceae Eukaryota root n.a. n.a. PMID[15921428]
NPO28391 Euonymus nanoides Species Celastraceae Eukaryota n.a. seed n.a. PMID[16462067]
NPO17782 Inula britannica Species Asteraceae Eukaryota flowers n.a. n.a. PMID[16643020]
NPO11144 Centella asiatica Species Apiaceae Eukaryota n.a. aerial part n.a. PMID[17520525]
NPO25094 Artemisia princeps Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[17996677]
NPO28528 Bridelia ferruginea Species Phyllanthaceae Eukaryota roots Gabon 1987 PMID[18327911]
NPO28528 Bridelia ferruginea Species Phyllanthaceae Eukaryota n.a. n.a. n.a. PMID[18327911]
NPO9865 Cichorium intybus Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[18341288]
NPO9865 Cichorium intybus Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[18460139]
NPO20081 Mycobacterium tuberculosis Species Mycobacteriaceae Bacteria n.a. n.a. n.a. PMID[19276083]
NPO14484 Echinacea purpurea Species Asteraceae Eukaryota flowers n.a. n.a. PMID[19374389]
NPO20081 Mycobacterium tuberculosis Species Mycobacteriaceae Bacteria n.a. n.a. n.a. PMID[20448045]
NPO10946 Pseudallescheria boydii Species Microascaceae Eukaryota n.a. n.a. n.a. PMID[20509707]
NPO28217 Septoria pistaciarum Species Mycosphaerellaceae Eukaryota n.a. n.a. n.a. PMID[20550123]
NPO20081 Mycobacterium tuberculosis Species Mycobacteriaceae Bacteria n.a. n.a. n.a. PMID[20843794]
NPO18296 Diospyros kaki Species Ebenaceae Eukaryota n.a. calyx n.a. PMID[21561086]
NPO1528 Dalea elegans Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[21561780]
NPO20081 Mycobacterium tuberculosis Species Mycobacteriaceae Bacteria n.a. n.a. n.a. PMID[22194604]
NPO10449 Arctium lappa Species Asteraceae Eukaryota n.a. fruit n.a. PMID[22396124]
NPO9064 Cirsium arvense Species Asteraceae Eukaryota n.a. fruit n.a. PMID[22396124]
NPO28217 Septoria pistaciarum Species Mycosphaerellaceae Eukaryota n.a. n.a. n.a. PMID[22530813]
NPO11144 Centella asiatica Species Apiaceae Eukaryota n.a. n.a. n.a. PMID[22966846]
NPO10449 Arctium lappa Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[23501116]
NPO10946 Pseudallescheria boydii Species Microascaceae Eukaryota n.a. n.a. n.a. PMID[23964677]
NPO18296 Diospyros kaki Species Ebenaceae Eukaryota n.a. fruit n.a. PMID[24086493]
NPO20081 Mycobacterium tuberculosis Species Mycobacteriaceae Bacteria n.a. n.a. n.a. PMID[24516143]
NPO28295 Foeniculum vulgare Species Apiaceae Eukaryota n.a. n.a. n.a. PMID[24617303]
NPO20440 Chrysanthemum x morifolium Species Asteraceae Eukaryota Flowers Tongxiang, China n.a. PMID[24621197]
NPO20081 Mycobacterium tuberculosis Species Mycobacteriaceae Bacteria n.a. n.a. n.a. PMID[25028392]
NPO2494 Xanthium strumarium Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[26081757]
NPO22258 Chrysanthemum indicum Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[26099993]
NPO17612 Xanthium sibiricum Species Asteraceae Eukaryota Fruits n.a. n.a. PMID[26110443]
NPO18671 Saussurea involucrata Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[26214875]
NPO20081 Mycobacterium tuberculosis Species Mycobacteriaceae Bacteria n.a. n.a. n.a. PMID[26466957]
NPO20081 Mycobacterium tuberculosis Species Mycobacteriaceae Bacteria n.a. n.a. n.a. PMID[26774486]
NPO28528 Bridelia ferruginea Species Phyllanthaceae Eukaryota n.a. n.a. n.a. PMID[26938998]
NPO28011 Swertia japonica Species Gentianaceae Eukaryota n.a. n.a. n.a. PMID[26996316]
NPO2494 Xanthium strumarium Species Asteraceae Eukaryota n.a. aerial part n.a. PMID[27169184]
NPO20081 Mycobacterium tuberculosis Species Mycobacteriaceae Bacteria n.a. n.a. n.a. PMID[27242221]
NPO9124 Inula japonica Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[27276091]
NPO20081 Mycobacterium tuberculosis Species Mycobacteriaceae Bacteria n.a. n.a. n.a. PMID[27807341]
NPO22258 Chrysanthemum indicum Species Asteraceae Eukaryota Flowers n.a. n.a. PMID[28156114]
NPO20440 Chrysanthemum x morifolium Species Asteraceae Eukaryota Flowers n.a. n.a. PMID[28248102]
NPO22258 Chrysanthemum indicum Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[29400471]
NPO22258 Chrysanthemum indicum Species Asteraceae Eukaryota Aerial Parts n.a. n.a. PMID[30726671]
NPO28276 Artemisia argyi Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[31181920]
NPO28276 Artemisia argyi Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[31418264]
NPO4031.1 Cynara cardunculus var. scolymus Varieties Asteraceae Eukaryota n.a. n.a. n.a. PMID[3430163]
NPO18296 Diospyros kaki Species Ebenaceae Eukaryota n.a. n.a. n.a. PMID[37324556]
NPO22175 Perovskia abrotanoides Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[37770099]
NPO14484 Echinacea purpurea Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[37959750]
NPO43006 Achillea milefollium Genus Asteraceae Eukaryota n.a. n.a. n.a. PMID[38611571]
NPO28276 Artemisia argyi Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[38754641]
NPO28011 Swertia japonica Species Gentianaceae Eukaryota n.a. n.a. n.a. PMID[5583807]
NPO4031.1 Cynara cardunculus var. scolymus Varieties Asteraceae Eukaryota n.a. n.a. n.a. PMID[6821187]
NPO20081 Mycobacterium tuberculosis Species Mycobacteriaceae Bacteria n.a. n.a. n.a. PMID[8917504]
NPO20081 Mycobacterium tuberculosis Species Mycobacteriaceae Bacteria n.a. n.a. n.a. PMID[97292]
NPO10449 Arctium lappa Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO9865 Cichorium intybus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO4031.1 Cynara cardunculus var. scolymus Varieties Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO18296 Diospyros kaki Species Ebenaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO20081 Mycobacterium tuberculosis Species Mycobacteriaceae Bacteria n.a. n.a. n.a. Database[COCONUT]
NPO28276 Artemisia argyi Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO10492 Artemisia montana Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO25094 Artemisia princeps Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO2494 Xanthium strumarium Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO11144 Centella asiatica Species Apiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO14484 Echinacea purpurea Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO20440 Chrysanthemum x morifolium Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28035 Streptomyces fumanus Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[COCONUT]
NPO22258 Chrysanthemum indicum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO4471 Blumea densiflora Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO9064 Cirsium arvense Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO1785 Corallina rubens Species Corallinaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO6024 Cratoxylum formosum Species Hypericaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO1528 Dalea elegans Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO11062 Euonymus grandiflorus Species Celastraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO480 Hygrophila erecta Species n.a. Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO8685 Hymenocallis arenicola Species Amaryllidaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO9525 Relicina samoensis Species Parmeliaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO24513 Streptomyces cyaneofuscatus Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[COCONUT]
NPO743 Wardomyces inflatus Species Microascaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO16931 Cichorium glandulosum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28011 Swertia japonica Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28614 Zieria smithii Species Rutaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO17612 Xanthium sibiricum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO17782 Inula britannica Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO27959 Codonocarpus australis Species Gyrostemonaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO12450 Cneorum pulverulentum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28704 Agaricus hortensis Species Agaricaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO9124 Inula japonica Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO18671 Saussurea involucrata Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO18273 Merendera sobolifera Species Colchicaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28481 Cerbera dilatata Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO22175 Perovskia abrotanoides Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28509 Achillea clypeolata Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO16669 Diospyros verrucosa Species Ebenaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28528 Bridelia ferruginea Species Phyllanthaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28334 Pyrola decorata Species Ericaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO10946 Pseudallescheria boydii Species Microascaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO28596 Streptomyces lavendofoliae Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[COCONUT]
NPO28656 Lactobacillus casei Species Lactobacillaceae Bacteria n.a. n.a. n.a. Database[COCONUT]
NPO9865 Cichorium intybus Species Asteraceae Eukaryota n.a. n.a. Database[FooDB]
NPO4031.1 Cynara cardunculus var. scolymus Varieties Asteraceae Eukaryota n.a. n.a. Database[FooDB]
NPO9865 Cichorium intybus Species Asteraceae Eukaryota Flower n.a. n.a. Database[FooDB]
NPO10449 Arctium lappa Species Asteraceae Eukaryota Fruit n.a. n.a. Database[FooDB]
NPO10449 Arctium lappa Species Asteraceae Eukaryota Leaf n.a. n.a. Database[FooDB]
NPO9865 Cichorium intybus Species Asteraceae Eukaryota Leaf n.a. n.a. Database[FooDB]
NPO10449 Arctium lappa Species Asteraceae Eukaryota Root n.a. n.a. Database[FooDB]
NPO9865 Cichorium intybus Species Asteraceae Eukaryota Root n.a. n.a. Database[FooDB]
NPO10449 Arctium lappa Species Asteraceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO10449 Arctium lappa Species Asteraceae Eukaryota n.a. n.a. Database[FooDB]
NPO4031.1 Cynara cardunculus var. scolymus Varieties Asteraceae Eukaryota n.a. n.a. Database[FooDB]
NPO9865 Cichorium intybus Species Asteraceae Eukaryota Roots n.a. Database[FooDB]
NPO18296 Diospyros kaki Species Ebenaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO28276 Artemisia argyi Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO18671 Saussurea involucrata Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO11062 Euonymus grandiflorus Species Celastraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO28295 Foeniculum vulgare Species Apiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO10449 Arctium lappa Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO17612 Xanthium sibiricum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO9124 Inula japonica Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO9865 Cichorium intybus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO17782 Inula britannica Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO28011 Swertia japonica Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO14484 Echinacea purpurea Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO22258 Chrysanthemum indicum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO28576 Berberis julianae Species Berberidaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO25094 Artemisia princeps Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO11144 Centella asiatica Species Apiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO14834 Trachelospermum asiaticum Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO4014 Erigeron breviscapus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO28334 Pyrola decorata Species Ericaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO11144 Centella asiatica Species Apiaceae Eukaryota n.a. n.a. n.a. Database[MetaboLights]
NPO9865 Cichorium intybus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[MetaboLights]
NPO10449 Arctium lappa Species Asteraceae Eukaryota n.a. n.a. Database[Phenol-Explorer]
NPO4031.1 Cynara cardunculus var. scolymus Varieties Asteraceae Eukaryota n.a. n.a. Database[Phenol-Explorer]
NPO9865 Cichorium intybus Species Asteraceae Eukaryota n.a. n.a. Database[Phenol-Explorer]
NPO17782 Inula britannica Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28276 Artemisia argyi Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO22258 Chrysanthemum indicum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO18296 Diospyros kaki Species Ebenaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO20440 Chrysanthemum x morifolium Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO9865 Cichorium intybus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO18671 Saussurea involucrata Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO11144 Centella asiatica Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO14484 Echinacea purpurea Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO9124 Inula japonica Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28295 Foeniculum vulgare Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO10449 Arctium lappa Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28011 Swertia japonica Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO4014 Erigeron breviscapus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO4031.1 Cynara cardunculus var. scolymus Varieties Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO12450 Cneorum pulverulentum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28576 Berberis julianae Species Berberidaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28334 Pyrola decorata Species Ericaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO17612 Xanthium sibiricum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO8685 Hymenocallis arenicola Species Amaryllidaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO14834 Trachelospermum asiaticum Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO25094 Artemisia princeps Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO11062 Euonymus grandiflorus Species Celastraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO22258 Chrysanthemum indicum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO17782 Inula britannica Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO9124 Inula japonica Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO28576 Berberis julianae Species Berberidaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO28276 Artemisia argyi Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO10449 Arctium lappa Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO28295 Foeniculum vulgare Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO17612 Xanthium sibiricum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO28334 Pyrola decorata Species Ericaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO9865 Cichorium intybus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO11144 Centella asiatica Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO28011 Swertia japonica Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO18296 Diospyros kaki Species Ebenaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO25094 Artemisia princeps Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO9124 Inula japonica Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO9865 Cichorium intybus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO20440 Chrysanthemum x morifolium Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO28276 Artemisia argyi Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO28295 Foeniculum vulgare Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO18296 Diospyros kaki Species Ebenaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO17782 Inula britannica Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO22258 Chrysanthemum indicum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO10492 Artemisia montana Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO10449 Arctium lappa Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO4014 Erigeron breviscapus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO11144 Centella asiatica Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO16931 Cichorium glandulosum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO2494 Xanthium strumarium Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO18671 Saussurea involucrata Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO28011 Swertia japonica Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO14834 Trachelospermum asiaticum Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO17612 Xanthium sibiricum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO28509 Achillea clypeolata Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28161 Stephania sutchuenensis Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28691 Streptomyces odorifer Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO27867 Turbo argyrostoma Species Turbinidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28481 Cerbera dilatata Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10946 Pseudallescheria boydii Species Microascaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9865 Cichorium intybus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28576 Berberis julianae Species Berberidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20395 Athanasia crithmifolia Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28053 Quercus serrata Species Fagaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO29353 Benzoin praecox n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO28528 Bridelia ferruginea Species Phyllanthaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28334 Pyrola decorata Species Ericaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28391 Euonymus nanoides Species Celastraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28374 Pleogyne cunninghami Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28073 Crateva nurvala Species Capparaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28200 Unonopsis glaucopetala Species Annonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28217 Septoria pistaciarum Species Mycosphaerellaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16669 Diospyros verrucosa Species Ebenaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28704 Agaricus hortensis Species Agaricaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28131 Polygala amara Species Polygalaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22175 Perovskia abrotanoides Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27943 Cardamine pinnata Species Brassicaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO29115 Rhinella arenarum Species Bufonidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5721 Psorothamnus spinosus Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27959 Codonocarpus australis Species Gyrostemonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28035 Streptomyces fumanus Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO28633 Bystropogon origanifolius Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4471 Blumea densiflora Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11144 Centella asiatica Species Apiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO480 Hygrophila erecta Species n.a. Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6331 Jacobaea subalpina Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12450 Cneorum pulverulentum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20081 Mycobacterium tuberculosis Species Mycobacteriaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO18861 Pyxine coccifera Species Caliciaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28656 Lactobacillus casei Species Lactobacillaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO28303 Pleogyne cunninghamii Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24513 Streptomyces cyaneofuscatus Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO28011 Swertia japonica Species Gentianaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20440 Chrysanthemum x morifolium Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27990 Schizonepeta multifida Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28295 Foeniculum vulgare Species Apiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9525 Relicina samoensis Species Parmeliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO743 Wardomyces inflatus Species Microascaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2494 Xanthium strumarium Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4031.1 Cynara cardunculus var. scolymus Varieties Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11062 Euonymus grandiflorus Species Celastraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25094 Artemisia princeps Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28614 Zieria smithii Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28596 Streptomyces lavendofoliae Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO9064 Cirsium arvense Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10492 Artemisia montana Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6024 Cratoxylum formosum Species Hypericaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28670 Mortierella elongata Species Mortierellaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18273 Merendera sobolifera Species Colchicaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18671 Saussurea involucrata Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25704 Tetraneuris acaulis Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17612 Xanthium sibiricum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16819 Preussia aemulans Species Sporormiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28269 Rubus rosa Species Rosaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14834 Trachelospermum asiaticum Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28276 Artemisia argyi Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10449 Arctium lappa Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8685 Hymenocallis arenicola Species Amaryllidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17782 Inula britannica Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1785 Corallina rubens Species Corallinaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1528 Dalea elegans Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22258 Chrysanthemum indicum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14484 Echinacea purpurea Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18296 Diospyros kaki Species Ebenaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16931 Cichorium glandulosum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4014 Erigeron breviscapus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9124 Inula japonica Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]

Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



  NP Quantity Composition/Concentration

Organism ID Organism Name Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference
NPO18296 Diospyros kaki n.a. n.a. 13359.86 ± 1.93 n.a. n.a. μg/mL PMID[37324556]
NPO43006 Achillea milefollium n.a. n.a. 0 ± 0 n.a. n.a. µg/g PMID[38611571]
NPO43006 Achillea milefollium n.a. n.a. 74.99 ± 34.59 n.a. n.a. µg/g PMID[38611571]
NPO43006 Achillea milefollium n.a. n.a. 30.2 ± 34.59 n.a. n.a. µg/g PMID[38611571]
NPO43006 Achillea milefollium n.a. n.a. 28.49 ± 23.71 n.a. n.a. µg/g PMID[38611571]
NPO43006 Achillea milefollium n.a. n.a. 2.87 ± 6.75 n.a. n.a. µg/g PMID[38611571]

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



 Biological Activity

Molecular-level activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT12 Individual protein Human immunodeficiency virus type 1 integrase Human immunodeficiency virus 1 IC50 = 1600.0 nM PMID[9986720]
NPT13 Individual protein Tyrosine-protein kinase LCK Homo sapiens Inhibition = 12.0 % PMID[19427202]
NPT2739 Individual protein Tyrosinase Mus musculus Inhibition > 20.0 % PMID[30030001]
NPT36 Individual protein Tyrosine-protein kinase SRC Homo sapiens Inhibition = 7.0 % PMID[19427202]
NPT37 Individual protein Signal transducer and activator of transcription 1-alpha/beta Homo sapiens Inhibition = 4.0 % PMID[19427202]
NPT39 Individual protein Signal transducer and activator of transcription 5B Homo sapiens Inhibition = -1.0 % PMID[19427202]
NPT5061 Individual protein Alanine aminotransferase 1 Homo sapiens Activity = 103.0 U/L PMID[3430163]
NPT5061 Individual protein Alanine aminotransferase 1 Homo sapiens Activity = 110.0 U/L PMID[3430163]
NPT38 Individual protein Signal transducer and activator of transcription 3 Homo sapiens Inhibition = 7.0 % PMID[19427202]

In vitro activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT15 Cell line Jurkat Homo sapiens Inhibition = -53.0 % PMID[16539370]
NPT1135 Cell line Hepatocyte Rattus norvegicus Activity = 17.6 % PMID[3430163]
NPT1135 Cell line Hepatocyte Rattus norvegicus Activity = 17.9 % PMID[3430163]
NPT1135 Cell line Hepatocyte Rattus norvegicus Activity = 16.5 % PMID[3430163]
NPT1135 Cell line Hepatocyte Rattus norvegicus Activity = 16.3 % PMID[3430163]
NPT1135 Cell line Hepatocyte Rattus norvegicus Activity = 16.8 % PMID[3430163]
NPT1135 Cell line Hepatocyte Rattus norvegicus Activity = 13.9 % PMID[3430163]
NPT1135 Cell line Hepatocyte Rattus norvegicus Activity = 13.3 % PMID[3430163]
NPT1135 Cell line Hepatocyte Rattus norvegicus Activity = 95.0 % PMID[6677713]
NPT1135 Cell line Hepatocyte Rattus norvegicus Activity = 84.0 % PMID[6677713]
NPT1135 Cell line Hepatocyte Rattus norvegicus Activity = 48.0 % PMID[6677713]
NPT1135 Cell line Hepatocyte Rattus norvegicus Activity = 20.0 IU/L PMID[6677713]
NPT1135 Cell line Hepatocyte Rattus norvegicus Activity = 27.0 IU/L PMID[6677713]
NPT1135 Cell line Hepatocyte Rattus norvegicus Activity = 51.0 IU/L PMID[6677713]
NPT113 Cell line RAW264.7 Mus musculus Inhibition = 13.02 % PMID[25497988]
NPT519 Cell line SH-SY5Y Homo sapiens Activity = 77.2 % PMID[28248102]
NPT24776 Cell line B16-F1 Mus musculus Inhibition = 61.0 % PMID[30030001]
NPT24 Organism Human immunodeficiency virus 1 Human immunodeficiency virus 1 ED50 = 4.0 uM PMID[9986720]
NPT2 Others Unspecified n.a. Activity = 126.0 U/L PMID[3430163]
NPT2 Others Unspecified n.a. Activity = 123.0 U/L PMID[3430163]
NPT2 Others Unspecified n.a. IC50 > 2000000.0 nM PMID[26395057]

In vivo activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference





 Experimental ADME

Experiment Model Experiment Tissue ADME Type ADME Relation ADME Value ADME Unit Reference





 Experimental Toxicity

Quantitative toxicity

Experiment Model Experiment Organism Toxicity Type Toxicity Relation Toxicity Value Toxicity Unit Reference

Common Abbreviations:
LC: Lethal Concentration; LD: Lethal Dose; LT:Lethal Time; NOAEL: No-observed-adverse-effect Level; BMDL: Benchmark Dose Lower Confidence Limit; BMD: Benchmark Dose; BMC:Benchmark Concentration; LOAEL: Lowest Observed Adverse Effect Level; RfD:Reference Dose; RfC:Reference Concentration; MRL: Minimal Risk Level; MEG: Maximum Exposure Guideline; PAC: Protective Action Criteria

Categorical toxicity labels

Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption
Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP toxicity records from domain-specific databases. These databases include:
ToxValDB: a curated database that compiles quantitative toxicity values for chemicals from diverse public sources to support toxicological research and risk assessment.
TOXRIC: a comprehensive, free-to-access, online database providing toxicological/feature data. The toxicity labels are retrieved from this database. [PMID: 36400569]


  Chemically structural similarity

Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes approximately 50,000 NPs with experimentally-derived bioactivity available in NPASS)

Similarity is measured using the Tanimoto coefficient (Tc) , which compares the binary fingerprints of two molecules. Tc is calculated as the intersection divided by the union of '1' bits in the fingerprints, ranging from 0 to 1, with 1 indicating highest similarity.

●  The left chart: Distribution of similarity level between NPC284948 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.5 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC303090
1.0 High Similarity NPC301382
1.0 High Similarity NPC37331
0.9333 High Similarity NPC220664
0.85 High Similarity NPC283560
0.85 High Similarity NPC24295
0.7826 Intermediate Similarity NPC471076
0.7826 Intermediate Similarity NPC192568
0.7143 Intermediate Similarity NPC319628
0.6552 Remote Similarity NPC224208
0.6552 Remote Similarity NPC41661
0.6515 Remote Similarity NPC37250
0.6515 Remote Similarity NPC142703
0.6515 Remote Similarity NPC152942
0.6515 Remote Similarity NPC9991
0.6515 Remote Similarity NPC302857
0.6515 Remote Similarity NPC600892
0.6324 Remote Similarity NPC477334
0.6154 Remote Similarity NPC13818
0.5797 Remote Similarity NPC471027
0.5672 Remote Similarity NPC219428
0.5625 Remote Similarity NPC488563
0.5507 Remote Similarity NPC295492
0.5507 Remote Similarity NPC303683
0.5507 Remote Similarity NPC274891
0.5417 Remote Similarity NPC278068
0.5357 Remote Similarity NPC473275
0.5278 Remote Similarity NPC205751
0.5278 Remote Similarity NPC206095
0.5278 Remote Similarity NPC35702
0.5278 Remote Similarity NPC224389
0.5238 Remote Similarity NPC474275
0.5224 Remote Similarity NPC258469
0.5224 Remote Similarity NPC43158
0.5224 Remote Similarity NPC610147
0.5195 Remote Similarity NPC156875
0.5161 Remote Similarity NPC217052
0.5161 Remote Similarity NPC329344
0.5161 Remote Similarity NPC237506
0.5161 Remote Similarity NPC32626
0.5139 Remote Similarity NPC477333

Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC284948 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.5 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
1.0 High Similarity NPD6190 Approved

Bioactivity similarity

  Bioactivity similarity

Similar Natural Products in NPASS

Similarity level is defined by Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.
Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data