Natural Product: NPC249808

Natural Product IDNPC249808
Common Name
?
The InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
HPOHAUWWDDPHRS-ZJUUUORDSA-N
IUPAC Name n.a.
Synonyms
Synthetic Gene Cluster n.a.
ChEMBL Identifier n.a.
PubChem CID 85568
Chemical Classification
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000012] Lipids and lipid-like molecules
      • [CHEMONTID:0000259] Prenol lipids
        • [CHEMONTID:0001549] Monoterpenoids
          • [CHEMONTID:0001401] Menthane monoterpenoids

The Chemical Classification was calculated by Classyfire, a software for chemical taxonomy calculation. Reference: DOI:10.1186/s13321-016-0174-y.

  Chemical Representations

Standard InCHIKey HPOHAUWWDDPHRS-ZJUUUORDSA-N
Standard InCHI InChI=1S/C10H18O/c1-7(2)9-5-4-8(3)6-10(9)11/h6-7,9-11H,4-5H2,1-3H3/t9-,10+/m1/s1
SMILES CC(C)[C@H]1CCC(=C[C@@H]1O)C

  Calculated Properties

Physi-Chem Properties

Molecular Weight:   154.14 Volume:   179.114
?
Van der Waals volume.
Dense:   0.861 LogP:   2.509
?
The logarithm of the n-octanol/water distribution coefficients.
logD7.4:   2.349
?
The logarithm of the n-octanol/water distribution coefficient at pH=7.4.
LogS:   -1.635
?
The logarithm of aqueous solubility value.
Rotatable Bonds:   1.0 Rigid Bonds:   6.0
TPSA:   20.23
?
Topological Polar Surface Area.
H-Bond Acceptor:   1.0
H-Bond Donor:   1.0 Rings:   1.0
Heavy Atoms:   1.0

MedChem Properties

QED Drug-Likeness Score:   0.575 GASA:   1.0
?
GASA represents the probability of being difficult to synthesize, ranging from 0 to 1.
Synthetic Accessibility Score:   3.582 Fsp3:   0.8
MCE-18:   17.111
?
MCE-18 stands for medicinal chemistry evolution.MCE-18≥45 is considered a suitable value.
Lipinski Rule-of-5:   Rejected
Pfizer Rule:   Rejected GSK Rule:   Rejected
Golden Triangle Rule:   Accepted BMS Rule:   0
Chelating Alert:   0 PAINS Alert:   0
Colloidal aggregators:   0.435 Fluc inhibitor:   0.001
?
The fluc inhibitor value is the probability of being fLuc inhibitors, within the range of 0 to 1.
Blue fluorescence:   0.042
?
The blue fluorescence value is the probability of being blue fluorescence, within the range of 0 to 1
Green fluorescence:   0.0
?
The green fluorescence value is the probability of being green fluorescence, within the range of 0 to 1
Reactive compounds:   0.795 Promiscuous compounds:   0.23

ADMET Properties (ADMETlab3.0)

ADMET: Absorption

Caco-2 Permeability:   -5.067 MDCK Permeability:   -4.952
Pgp-inhibitor:   0.792 Pgp-substrate:   0.532
PAMPA:   0.271
?
The experimental data for Peff was logarithmically transformed (logPeff). Molecules with log Peff values below 2.0 were classified as low-permeability (Category 0), while those with log Peff values exceeding 2.5 were classified as high-permeability (Category 1).
Human Intestinal Absorption (HIA):   0.142
20% Bioavailability (F20%):   0.811 30% Bioavailability (F30%):   0.896
50% Bioavailability (F50%):   0.962

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):   0.194 MRP1:   0.772
Plasma Protein Binding (PPB):   74.888% Volume Distribution (VD):   0.282
Fu: 24.657%
?
The fraction unbound in plasms.
OATP1B1 inhibitor:   0.992
OATP1B3 inhibitor:   0.844 BCRP inhibitor:   0.318
BSEP inhibitor:   0.762

ADMET: Metabolism

CYP1A2-inhibitor:   0.104 CYP1A2-substrate:   0.019
CYP2C19-inhibitor:   0.249 CYP2C19-substrate:   0.019
CYP2C9-inhibitor:   0.385 CYP2C9-substrate:   0.032
CYP2D6-inhibitor:   0.182 CYP2D6-substrate:   0.05
CYP3A4-inhibitor:   0.395 CYP3A4-substrate:   0.905
CYP2B6-substrate:   0.0 CYP2C8-inhibitor:   0.067
HLM stability:   0.715
?
Human liver microsomal (HLM) stability. Category 0: stable+ (HLM > 30 min); Category 1: unstable- (HLM ≤ 30 min). The output value is the probability of human liver microsomal instability, where a value closer to 1 indicates a higher likelihood of instability.

ADMET: Excretion

Clearance (CL):  11.851 Half-life (T1/2):  1.691

ADMET: Toxicity

hERG Blockers:  0.08 hERG Blockers (10um):  0.464
Human Hepatotoxicity (H-HT):  0.631 Drug-induced Liver Injury (DILI):  0.313
AMES Toxicity:  0.307 Rat Oral Acute Toxicity:  0.267
Maximum Recommended Daily Dose:  0.137 Skin Sensitization:  0.925
Carcinogencity:  0.573 Eye Corrosion:  0.924
Eye Irritation:  0.974 Respiratory Toxicity:  0.627
Drug-induced Neurotoxicity:  0.378 Ototoxicity:  0.366
Hematotoxicity:  0.572 Drug-induced Nephrotoxicity:  0.42
Genotoxicity:  0.056 RPMI-8226 Immunitoxicity:  0.115
A549 Cytotoxicity:  0.239 Hek293 Cytotoxicity:  0.103
BCF:   2.033
?
Bioconcentration factors are used for considering secondary poisoning potential and assessing risks to human health via the food chain. The unit is -log10[(mg/L)/(1000*MW)].
IGC50:   3.497
?
48 hour Tetrahymena pyriformis IGC50. The unit of IGC50 is -log10[(mg/L)/(1000*MW)].
LC50DM:   4.573
?
48 hour Daphnia magna LC50. The unit of LC50DM is -log10[(mg/L)/(1000*MW)].
LC50FM:   4.159
?
96 hour fathead minnow LC50. The unit of LC50FM is -log10[(mg/L)/(1000*MW)].

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO163 Daucus carota Species Apiaceae Eukaryota n.a. n.a. DOI[10.1016/0045-6535(91)90110-Y]
NPO163 Daucus carota Species Apiaceae Eukaryota n.a. n.a. n.a. DOI[10.1016/j.abb.2017.09.009]
NPO163 Daucus carota Species Apiaceae Eukaryota n.a. n.a. n.a. DOI[10.1016/j.jfca.2004.07.004]
NPO163 Daucus carota Species Apiaceae Eukaryota n.a. n.a. n.a. DOI[10.1016/j.jfca.2005.08.001]
NPO163 Daucus carota Species Apiaceae Eukaryota n.a. retail stores, supermarkets and market stalls in Forssa and in the Helsinki area 2003–2005 DOI[10.1016/j.jfca.2006.05.007]
NPO163 Daucus carota Species Apiaceae Eukaryota n.a. n.a. n.a. DOI[10.1016/S0885-5765(05)80069-4]
NPO163 Daucus carota Species Apiaceae Eukaryota n.a. n.a. 1996-Sep PMID[10352947]
NPO19472 Thymus vulgaris Species Lamiaceae Eukaryota Leaves n.a. n.a. PMID[12088434]
NPO9290 Zanthoxylum piperitum Species Rutaceae Eukaryota n.a. leaf n.a. PMID[15388977]
NPO163 Daucus carota Species Apiaceae Eukaryota n.a. n.a. n.a. PMID[15877880]
NPO9290 Zanthoxylum piperitum Species Rutaceae Eukaryota n.a. stem n.a. PMID[17202689]
NPO163 Daucus carota Species Apiaceae Eukaryota n.a. n.a. n.a. PMID[18460139]
NPO163 Daucus carota Species Apiaceae Eukaryota n.a. Northeastern Regional Plant Introduction Station at Geneva 1966, 1967, and 1968 crop seasons PMID[18460139]
NPO9290 Zanthoxylum piperitum Species Rutaceae Eukaryota n.a. pericarp n.a. PMID[20628994]
NPO11100 Artemisia capillaris Species Asteraceae Eukaryota n.a. whole plant n.a. PMID[21428416]
NPO19472 Thymus vulgaris Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[21707257]
NPO163 Daucus carota Species Apiaceae Eukaryota n.a. n.a. n.a. PMID[21800857]
NPO163 Daucus carota Species Apiaceae Eukaryota n.a. root n.a. PMID[21800857]
NPO163 Daucus carota Species Apiaceae Eukaryota n.a. exocarp n.a. PMID[21800857]
NPO11100 Artemisia capillaris Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[22870812]
NPO14077 Chamaecyparis lawsoniana Species Cupressaceae Eukaryota n.a. stem n.a. PMID[23157017]
NPO14077 Chamaecyparis lawsoniana Species Cupressaceae Eukaryota n.a. leaf n.a. PMID[23157017]
NPO11100 Artemisia capillaris Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[23435948]
NPO5315 Zanthoxylum bungeanum Species Rutaceae Eukaryota n.a. n.a. n.a. PMID[24175626]
NPO6701 Cinnamomum camphora Species Lauraceae Eukaryota n.a. n.a. n.a. PMID[25612070]
NPO11100 Artemisia capillaris Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[25737008]
NPO18951 Ligusticum sinense Species Apiaceae Eukaryota n.a. n.a. n.a. PMID[26521454]
NPO163 Daucus carota Species Apiaceae Eukaryota n.a. n.a. n.a. PMID[2831703]
NPO19472 Thymus vulgaris Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[29726697]
NPO17550 Origanum onites Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[31323754]
NPO18735 Pinus mugo Species Pinaceae Eukaryota n.a. n.a. n.a. PMID[31475763]
NPO60191 Arnica Montana Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[31744121]
NPO6701 Cinnamomum camphora Species Lauraceae Eukaryota n.a. n.a. n.a. PMID[31994661]
NPO6701 Cinnamomum camphora Species Lauraceae Eukaryota n.a. n.a. n.a. PMID[32035880]
NPO52014 Nepeta binaloudensis Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[32092043]
NPO60191 Arnica Montana Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[32178275]
NPO14774 Cymbopogon schoenanthus Species Poaceae Eukaryota n.a. n.a. n.a. PMID[32286731]
NPO6701 Cinnamomum camphora Species Lauraceae Eukaryota n.a. n.a. n.a. PMID[32674448]
NPO56530 Tanacetum fisherae Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[33977845]
NPO49218 Artemisia fragrans Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[34081830]
NPO19472 Thymus vulgaris Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[34443694]
NPO6701 Cinnamomum camphora Species Lauraceae Eukaryota n.a. n.a. n.a. PMID[34500567]
NPO49365 Peucedanum dhana Species Apiaceae Eukaryota n.a. n.a. n.a. PMID[34580393]
NPO19472 Thymus vulgaris Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[34770961]
NPO46241 Daucus carota subsp. maximus Species Apiaceae Eukaryota n.a. n.a. n.a. PMID[34927490]
NPO14774 Cymbopogon schoenanthus Species Poaceae Eukaryota n.a. n.a. n.a. PMID[34946632]
NPO8698 Zanthoxylum schinifolium Species Rutaceae Eukaryota n.a. n.a. n.a. PMID[35537359]
NPO19472 Thymus vulgaris Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[35631245]
NPO42012 Rosmarinus officinalis Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[35889256]
NPO14798 Origanum majorana Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[36144869]
NPO43596 Cladanthus scariosus Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[36520049]
NPO14798 Origanum majorana Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[36671383]
NPO12158 Satureja hortensis Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[36671383]
NPO42012 Rosmarinus officinalis Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[36677644]
NPO43457 Thymus holosericeus Genus Lamiaceae Eukaryota n.a. n.a. n.a. PMID[36679061]
NPO6701 Cinnamomum camphora Species Lauraceae Eukaryota n.a. n.a. n.a. PMID[36770639]
NPO5315 Zanthoxylum bungeanum Species Rutaceae Eukaryota n.a. n.a. n.a. PMID[36786362]
NPO14798 Origanum majorana Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[36840093]
NPO19472 Thymus vulgaris Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[36840093]
NPO12158 Satureja hortensis Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[36840093]
NPO63036 Abies lasiocarpa var. lasiocarpa Genus Pinaceae Eukaryota n.a. n.a. n.a. PMID[36985451]
NPO54216 Pinus contorta subsp. latifolia Genus Pinaceae Eukaryota n.a. n.a. n.a. PMID[36985451]
NPO54547 Pseudotsuga menziesii var. glauca Species Pinaceae Eukaryota n.a. n.a. n.a. PMID[36985451]
NPO16414 Thuja plicata Species Cupressaceae Eukaryota n.a. n.a. n.a. PMID[36985451]
NPO19472 Thymus vulgaris Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[37020229]
NPO8698 Zanthoxylum schinifolium Species Rutaceae Eukaryota n.a. n.a. n.a. PMID[37029634]
NPO5315 Zanthoxylum bungeanum Species Rutaceae Eukaryota n.a. n.a. n.a. PMID[37029634]
NPO5315 Zanthoxylum bungeanum Species Rutaceae Eukaryota n.a. n.a. n.a. PMID[37049761]
NPO14798 Origanum majorana Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[37049808]
NPO14798 Origanum majorana Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[37175125]
NPO19472 Thymus vulgaris Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[37226152]
NPO47617 Echinops polyceras Genus Asteraceae Eukaryota n.a. n.a. n.a. PMID[37241978]
NPO14798 Origanum majorana Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[37402865]
NPO9049 Tanacetum parthenium Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[37446568]
NPO14077 Chamaecyparis lawsoniana Species Cupressaceae Eukaryota n.a. n.a. n.a. PMID[37447036]
NPO17550 Origanum onites Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[37513176]
NPO6701 Cinnamomum camphora Species Lauraceae Eukaryota n.a. n.a. n.a. PMID[37533252]
NPO60061 Boswellia rivae Species Burseraceae Eukaryota n.a. n.a. n.a. PMID[37653941]
NPO31073 Ligusticum chuanxiong Species Apiaceae Eukaryota n.a. n.a. n.a. PMID[37656744]
NPO64248 Eucalyptus patellaris Species Myrtaceae Eukaryota n.a. n.a. n.a. PMID[37894690]
NPO58210 Anthemis palestina Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[38005810]
NPO19472 Thymus vulgaris Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[38257205]
NPO57489 Acacia gerrardii Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[38299486]
NPO19472 Thymus vulgaris Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[38370080]
NPO19472 Thymus vulgaris Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[38381096]
NPO42012 Rosmarinus officinalis Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[38474654]
NPO53768 Salvia ringens Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[38611827]
NPO42012 Rosmarinus officinalis Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[38617605]
NPO42012 Rosmarinus officinalis Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[38695450]
NPO19472 Thymus vulgaris Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[38695450]
NPO9049 Tanacetum parthenium Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[38731460]
NPO13182 Achillea wilhelmsii Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[38783072]
NPO42417 Achillea vermicularis Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[38783072]
NPO64307 Achillea tenuifolia Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[38783072]
NPO14077 Chamaecyparis lawsoniana Species Cupressaceae Eukaryota n.a. n.a. n.a. PMID[38794396]
NPO16414 Thuja plicata Species Cupressaceae Eukaryota n.a. n.a. n.a. PMID[38794396]
NPO19162 Tsuga heterophylla Species Pinaceae Eukaryota n.a. n.a. n.a. PMID[38794396]
NPO6701 Cinnamomum camphora Species Lauraceae Eukaryota n.a. n.a. n.a. PMID[38998569]
NPO49218 Artemisia fragrans Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[38999565]
NPO42012 Rosmarinus officinalis Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[39063231]
NPO42012 Rosmarinus officinalis Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[39135848]
NPO51683 Cachrys pungens Species Apiaceae Eukaryota n.a. n.a. n.a. PMID[39285749]
NPO13182 Achillea wilhelmsii Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[39349567]
NPO19472 Thymus vulgaris Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[39407547]
NPO55878 Origanum vulgare L. ssp. hirtum Genus Lamiaceae Eukaryota n.a. n.a. n.a. PMID[39407547]
NPO50502 Origanum vulgare L. ssp. vulgare Genus Lamiaceae Eukaryota n.a. n.a. n.a. PMID[39407547]
NPO6701 Cinnamomum camphora Species Lauraceae Eukaryota n.a. n.a. n.a. PMID[39489989]
NPO14774 Cymbopogon schoenanthus Species Poaceae Eukaryota n.a. n.a. n.a. PMID[39545686]
NPO9049 Tanacetum parthenium Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[39596244]
NPO19438 Alpinia nutans Species Zingiberaceae Eukaryota n.a. n.a. n.a. PMID[39692462]
NPO42201 Artemisia herba-alba asso. Genus Asteraceae Eukaryota n.a. n.a. n.a. PMID[39717220]
NPO62240 Artemisia huguetii caball. Genus Asteraceae Eukaryota n.a. n.a. n.a. PMID[39717220]
NPO44392 Gynoxys reinaldii Genus Asteraceae Eukaryota n.a. n.a. n.a. PMID[39771242]
NPO163 Daucus carota Species Apiaceae Eukaryota n.a. n.a. n.a. PMID[6821187]
NPO6701 Cinnamomum camphora Species Lauraceae Eukaryota n.a. stem n.a. Database[Article]
NPO163 Daucus carota Species Apiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO14798 Origanum majorana Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO42012 Rosmarinus officinalis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO12158 Satureja hortensis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO19472 Thymus vulgaris Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO11100 Artemisia capillaris Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO18046 Mosla chinensis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO17550 Origanum onites Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO5315 Zanthoxylum bungeanum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO8698 Zanthoxylum schinifolium Species Rutaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO16414 Thuja plicata Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO6701 Cinnamomum camphora Species Lauraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO13182 Achillea wilhelmsii Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO18735 Pinus mugo Species Pinaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO18951 Ligusticum sinense Species Apiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO22033 Cnidium officinale Species Apiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO31073 Ligusticum chuanxiong Species Apiaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO9049 Tanacetum parthenium Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO57489 Acacia gerrardii Species Fabaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO49218 Artemisia fragrans Species Asteraceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO19162 Tsuga heterophylla Species Pinaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO14774 Cymbopogon schoenanthus Species Poaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO14077 Chamaecyparis lawsoniana Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[COCONUT]
NPO163 Daucus carota Species Apiaceae Eukaryota n.a. n.a. Database[FooDB]
NPO19472 Thymus vulgaris Species Lamiaceae Eukaryota Essential Oil n.a. n.a. Database[FooDB]
NPO42012 Rosmarinus officinalis Species Lamiaceae Eukaryota Leaf n.a. n.a. Database[FooDB]
NPO12158 Satureja hortensis Species Lamiaceae Eukaryota Leaf n.a. n.a. Database[FooDB]
NPO19472 Thymus vulgaris Species Lamiaceae Eukaryota Leaf n.a. n.a. Database[FooDB]
NPO163 Daucus carota Species Apiaceae Eukaryota Leaf n.a. n.a. Database[FooDB]
NPO14798 Origanum majorana Species Lamiaceae Eukaryota Plant n.a. n.a. Database[FooDB]
NPO17550 Origanum onites Species Lamiaceae Eukaryota Plant n.a. n.a. Database[FooDB]
NPO42012 Rosmarinus officinalis Species Lamiaceae Eukaryota Plant n.a. n.a. Database[FooDB]
NPO12158 Satureja hortensis Species Lamiaceae Eukaryota Plant n.a. n.a. Database[FooDB]
NPO19472 Thymus vulgaris Species Lamiaceae Eukaryota Plant n.a. n.a. Database[FooDB]
NPO163 Daucus carota Species Apiaceae Eukaryota Plant n.a. n.a. Database[FooDB]
NPO163 Daucus carota Species Apiaceae Eukaryota Root n.a. n.a. Database[FooDB]
NPO14798 Origanum majorana Species Lamiaceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO12158 Satureja hortensis Species Lamiaceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO163 Daucus carota Species Apiaceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO17550 Origanum onites Species Lamiaceae Eukaryota Shoot n.a. n.a. Database[FooDB]
NPO42012 Rosmarinus officinalis Species Lamiaceae Eukaryota Shoot n.a. n.a. Database[FooDB]
NPO19472 Thymus vulgaris Species Lamiaceae Eukaryota Shoot n.a. n.a. Database[FooDB]
NPO163 Daucus carota Species Apiaceae Eukaryota Shoot n.a. n.a. Database[FooDB]
NPO12158 Satureja hortensis Species Lamiaceae Eukaryota Stem n.a. n.a. Database[FooDB]
NPO42012 Rosmarinus officinalis Species Lamiaceae Eukaryota Tissue Culture n.a. n.a. Database[FooDB]
NPO163 Daucus carota Species Apiaceae Eukaryota Tissue Culture n.a. n.a. Database[FooDB]
NPO42012 Rosmarinus officinalis Species Lamiaceae Eukaryota n.a. n.a. Database[FooDB]
NPO14798 Origanum majorana Species Lamiaceae Eukaryota n.a. n.a. Database[FooDB]
NPO19472 Thymus vulgaris Species Lamiaceae Eukaryota n.a. n.a. Database[FooDB]
NPO12158 Satureja hortensis Species Lamiaceae Eukaryota n.a. n.a. Database[FooDB]
NPO163 Daucus carota Species Apiaceae Eukaryota Fruit n.a. n.a. Database[FooDB]
NPO12158 Satureja hortensis Species Lamiaceae Eukaryota n.a. n.a. Database[FooDB]
NPO14798 Origanum majorana Species Lamiaceae Eukaryota n.a. n.a. Database[FooDB]
NPO163 Daucus carota Species Apiaceae Eukaryota Roots n.a. Database[FooDB]
NPO19472 Thymus vulgaris Species Lamiaceae Eukaryota n.a. n.a. Database[FooDB]
NPO42012 Rosmarinus officinalis Species Lamiaceae Eukaryota n.a. n.a. Database[FooDB]
NPO11100 Artemisia capillaris Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO31073 Ligusticum chuanxiong Species Apiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO5315 Zanthoxylum bungeanum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO163 Daucus carota Species Apiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO8698 Zanthoxylum schinifolium Species Rutaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO18951 Ligusticum sinense Species Apiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO19472 Thymus vulgaris Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO6701 Cinnamomum camphora Species Lauraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO19162 Tsuga heterophylla Species Pinaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO9290 Zanthoxylum piperitum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO14798 Origanum majorana Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO9049 Tanacetum parthenium Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO18046 Mosla chinensis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO22033 Cnidium officinale Species Apiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO16414 Thuja plicata Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO12158 Satureja hortensis Species Lamiaceae Eukaryota n.a. n.a. Database[Phenol-Explorer]
NPO163 Daucus carota Species Apiaceae Eukaryota n.a. n.a. Database[Phenol-Explorer]
NPO17550 Origanum onites Species Lamiaceae Eukaryota n.a. n.a. Database[Phenol-Explorer]
NPO19472 Thymus vulgaris Species Lamiaceae Eukaryota n.a. n.a. Database[Phenol-Explorer]
NPO42012 Rosmarinus officinalis Species Lamiaceae Eukaryota n.a. n.a. Database[Phenol-Explorer]
NPO11100 Artemisia capillaris Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO6701 Cinnamomum camphora Species Lauraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO5315 Zanthoxylum bungeanum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO18951 Ligusticum sinense Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO19472 Thymus vulgaris Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO8698 Zanthoxylum schinifolium Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO18046 Mosla chinensis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO163 Daucus carota Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO16414 Thuja plicata Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO9290 Zanthoxylum piperitum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO19162 Tsuga heterophylla Species Pinaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO22033 Cnidium officinale Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO9049 Tanacetum parthenium Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO14798 Origanum majorana Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO31073 Ligusticum chuanxiong Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO6701 Cinnamomum camphora Species Lauraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO18046 Mosla chinensis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO19472 Thymus vulgaris Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO163 Daucus carota Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO8698 Zanthoxylum schinifolium Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO18951 Ligusticum sinense Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO11100 Artemisia capillaris Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO9290 Zanthoxylum piperitum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO14798 Origanum majorana Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO5315 Zanthoxylum bungeanum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO18046 Mosla chinensis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO19472 Thymus vulgaris Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO163 Daucus carota Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO11100 Artemisia capillaris Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO18951 Ligusticum sinense Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO9290 Zanthoxylum piperitum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO22033 Cnidium officinale Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO5315 Zanthoxylum bungeanum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO8698 Zanthoxylum schinifolium Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO9049 Tanacetum parthenium Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6701 Cinnamomum camphora Species Lauraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16414 Thuja plicata Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18735 Pinus mugo Species Pinaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5315 Zanthoxylum bungeanum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14077 Chamaecyparis lawsoniana Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13182 Achillea wilhelmsii Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19472 Thymus vulgaris Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14798 Origanum majorana Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9290 Zanthoxylum piperitum Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11100 Artemisia capillaris Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19162 Tsuga heterophylla Species Pinaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18046 Mosla chinensis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14774 Cymbopogon schoenanthus Species Poaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19438 Alpinia nutans Species Zingiberaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO163 Daucus carota Species Apiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12158 Satureja hortensis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8698 Zanthoxylum schinifolium Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17550 Origanum onites Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18951 Ligusticum sinense Species Apiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



  NP Quantity Composition/Concentration

Organism ID Organism Name Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference
NPO12158 Satureja hortensis Oil n.a. 0.11 n.a. n.a. % PMID[36671383]
NPO13182 Achillea wilhelmsii Oil n.a. 2.53 n.a. n.a. % PMID[38783072]
NPO13182 Achillea wilhelmsii Oil n.a. 3.74 n.a. n.a. % PMID[38783072]
NPO13182 Achillea wilhelmsii Oil n.a. 3.79 n.a. n.a. % PMID[38783072]
NPO13182 Achillea wilhelmsii Oil n.a. 0.3 n.a. n.a. % PMID[38783072]
NPO13182 Achillea wilhelmsii Oil n.a. 0 n.a. n.a. % PMID[38783072]
NPO14077 Chamaecyparis lawsoniana Oil Leaves 0.1 n.a. n.a. % PMID[38794396]
NPO14774 Cymbopogon schoenanthus Oil n.a. 8.8 n.a. n.a. % PMID[32286731]
NPO14774 Cymbopogon schoenanthus Oil n.a. 8.9 n.a. n.a. % PMID[32286731]
NPO14798 Origanum majorana Oil n.a. 0.6 n.a. n.a. % PMID[36144869]
NPO14798 Origanum majorana Oil n.a. 0.4 n.a. n.a. % PMID[37049808]
NPO14798 Origanum majorana Oil n.a. 0.50 n.a. n.a. % PMID[36840093]
NPO14798 Origanum majorana Oil n.a. 0.72 n.a. n.a. % PMID[36671383]
NPO14798 Origanum majorana Oil n.a. 0.26 n.a. n.a. % PMID[36144869]
NPO16414 Thuja plicata Oil Leaves 0.1 n.a. n.a. % PMID[38794396]
NPO16414 Thuja plicata Oil Leaves 0.1 n.a. n.a. % PMID[36985451]
NPO17550 Origanum onites Oil n.a. 0.147 n.a. n.a. % PMID[31323754]
NPO18735 Pinus mugo Oil n.a. 0.1 n.a. n.a. % PMID[31475763]
NPO19162 Tsuga heterophylla Oil Leaves 0.1 n.a. n.a. % PMID[38794396]
NPO19438 Alpinia nutans Oil n.a. 0.41 n.a. n.a. % PMID[39692462]
NPO19438 Alpinia nutans Oil n.a. 0.42 n.a. n.a. % PMID[39692462]
NPO19438 Alpinia nutans Oil n.a. 0.57 n.a. n.a. % PMID[39692462]
NPO19438 Alpinia nutans Oil n.a. 0.35 n.a. n.a. % PMID[39692462]
NPO19438 Alpinia nutans Oil n.a. 0.31 n.a. n.a. % PMID[39692462]
NPO19438 Alpinia nutans Oil n.a. 0.40 n.a. n.a. % PMID[39692462]
NPO19438 Alpinia nutans Oil n.a. 0.32 n.a. n.a. % PMID[39692462]
NPO19438 Alpinia nutans Oil n.a. 0.37 n.a. n.a. % PMID[39692462]
NPO19438 Alpinia nutans Oil n.a. 0.36 n.a. n.a. % PMID[39692462]
NPO19472 Thymus vulgaris Oil n.a. 0.00 n.a. n.a. % PMID[39407547]
NPO42012 Rosmarinus officinalis Oil n.a. 3.02 ± 0.26 n.a. n.a. % PMID[36677644]
NPO42012 Rosmarinus officinalis Oil n.a. 0.53 ± 0.06 n.a. n.a. % PMID[36677644]
NPO42012 Rosmarinus officinalis Oil n.a. 0.83 ± 0.07 n.a. n.a. % PMID[36677644]
NPO42012 Rosmarinus officinalis Oil n.a. 1.08 ± 0.14 n.a. n.a. % PMID[36677644]
NPO42201 Artemisia herba-alba asso. Oil n.a. 0 n.a. n.a. % PMID[39717220]
NPO42417 Achillea vermicularis Oil n.a. 1.16 n.a. n.a. % PMID[38783072]
NPO42417 Achillea vermicularis Oil n.a. 1.21 n.a. n.a. % PMID[38783072]
NPO42417 Achillea vermicularis Oil n.a. 0.25 n.a. n.a. % PMID[38783072]
NPO42417 Achillea vermicularis Oil n.a. 0 n.a. n.a. % PMID[38783072]
NPO42417 Achillea vermicularis Oil n.a. 0.21 n.a. n.a. % PMID[38783072]
NPO43457 Thymus holosericeus Oil n.a. 0.1 n.a. n.a. % PMID[36679061]
NPO43457 Thymus holosericeus Oil n.a. 0.05 n.a. n.a. % PMID[36679061]
NPO43596 Cladanthus scariosus Oil Aerial parts 0.2 n.a. n.a. % PMID[36520049]
NPO43596 Cladanthus scariosus Oil Aerial parts 0.4 n.a. n.a. % PMID[36520049]
NPO44392 Gynoxys reinaldii Oil n.a. 0.1 n.a. n.a. % PMID[39771242]
NPO46241 Daucus carota subsp. maximus Oil n.a. 0.3 n.a. n.a. % PMID[34927490]
NPO47617 Echinops polyceras Hydro distillation Inflorescences 0.14 n.a. n.a. % PMID[37241978]
NPO49218 Artemisia fragrans Oil Aerial parts 1.3 n.a. n.a. % PMID[38999565]
NPO49365 Peucedanum dhana Oil n.a. 51.23±0.42 n.a. n.a. % PMID[34580393]
NPO50502 Origanum vulgare L. ssp. vulgare Oil n.a. 0.13 n.a. n.a. % PMID[39407547]
NPO51683 Cachrys pungens Oil n.a. 0.10 n.a. n.a. % PMID[39285749]
NPO52014 Nepeta binaloudensis Oil n.a. 0.2 n.a. n.a. % PMID[32092043]
NPO53768 Salvia ringens Oil n.a. 0.6 n.a. n.a. % PMID[38611827]
NPO53768 Salvia ringens Oil n.a. 0.4 n.a. n.a. % PMID[38611827]
NPO53768 Salvia ringens Oil n.a. 0.2 n.a. n.a. % PMID[38611827]
NPO54216 Pinus contorta subsp. latifolia Oil Leaves 0.2 n.a. n.a. % PMID[36985451]
NPO54216 Pinus contorta subsp. latifolia Oil Leaves 0.1 n.a. n.a. % PMID[36985451]
NPO54547 Pseudotsuga menziesii var. glauca Oil Leaves 0.1 n.a. n.a. % PMID[36985451]
NPO55878 Origanum vulgare L. ssp. hirtum Oil n.a. 0.00 n.a. n.a. % PMID[39407547]
NPO56530 Tanacetum fisherae Oil Leaves 12.8 n.a. n.a. % PMID[33977845]
NPO56530 Tanacetum fisherae Oil Flowers 7.8 n.a. n.a. % PMID[33977845]
NPO57489 Acacia gerrardii Oil Leaves 0.26 n.a. n.a. % PMID[38299486]
NPO58210 Anthemis palestina Oven-dried n.a. 0.13 n.a. n.a. % PMID[38005810]
NPO58210 Anthemis palestina Oven-dried n.a. 0.26 n.a. n.a. % PMID[38005810]
NPO58210 Anthemis palestina Shade-dried n.a. 0.36 n.a. n.a. % PMID[38005810]
NPO58210 Anthemis palestina Sun-dried n.a. 0.26 n.a. n.a. % PMID[38005810]
NPO60061 Boswellia rivae Oil n.a. 0.3 n.a. n.a. % PMID[37653941]
NPO60191 Arnica Montana Oil n.a. 0.01 ± 0.001 n.a. n.a. % PMID[32178275]
NPO60191 Arnica Montana Oil n.a. 0.01 ± 0.000 n.a. n.a. % PMID[32178275]
NPO60191 Arnica Montana Oil n.a. 0.01 ± 0.007 n.a. n.a. % PMID[32178275]
NPO62240 Artemisia huguetii caball. Oil n.a. 0.16 n.a. n.a. % PMID[39717220]
NPO63036 Abies lasiocarpa var. lasiocarpa Oil Leaves 0.1 n.a. n.a. % PMID[36985451]
NPO63036 Abies lasiocarpa var. lasiocarpa Oil Leaves 0.2 n.a. n.a. % PMID[36985451]
NPO64248 Eucalyptus patellaris Oil n.a. 0.3 n.a. n.a. % PMID[37894690]
NPO64307 Achillea tenuifolia Oil n.a. 0.78 n.a. n.a. % PMID[38783072]
NPO64307 Achillea tenuifolia Oil n.a. 3.82 n.a. n.a. % PMID[38783072]
NPO64307 Achillea tenuifolia Oil n.a. 1.17 n.a. n.a. % PMID[38783072]
NPO64307 Achillea tenuifolia Oil n.a. 0 n.a. n.a. % PMID[38783072]
NPO64307 Achillea tenuifolia Oil n.a. 2.92 n.a. n.a. % PMID[38783072]
NPO64307 Achillea tenuifolia Oil n.a. 1.2 n.a. n.a. % PMID[38783072]
NPO64307 Achillea tenuifolia Oil n.a. 0.58 n.a. n.a. % PMID[38783072]
NPO6701 Cinnamomum camphora Oil n.a. 0.1–1.0 n.a. n.a. % PMID[32674448]
NPO9049 Tanacetum parthenium Oil n.a. 0.18 n.a. n.a. % PMID[38731460]
NPO9049 Tanacetum parthenium Oil n.a. 0.12 n.a. n.a. % PMID[38731460]

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].



 Biological Activity

Molecular-level activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference

In vitro activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference

In vivo activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference





 Experimental ADME

Experiment Model Experiment Tissue ADME Type ADME Relation ADME Value ADME Unit Reference





 Experimental Toxicity

Quantitative toxicity

Experiment Model Experiment Organism Toxicity Type Toxicity Relation Toxicity Value Toxicity Unit Reference

Common Abbreviations:
LC: Lethal Concentration; LD: Lethal Dose; LT:Lethal Time; NOAEL: No-observed-adverse-effect Level; BMDL: Benchmark Dose Lower Confidence Limit; BMD: Benchmark Dose; BMC:Benchmark Concentration; LOAEL: Lowest Observed Adverse Effect Level; RfD:Reference Dose; RfC:Reference Concentration; MRL: Minimal Risk Level; MEG: Maximum Exposure Guideline; PAC: Protective Action Criteria

Categorical toxicity labels

Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption
Hepatotoxicity Carcinogenicity Mutagenicity Cardiotoxicity Respiratory Toxicity Eye Irritation Endocrine Disruption

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP toxicity records from domain-specific databases. These databases include:
ToxValDB: a curated database that compiles quantitative toxicity values for chemicals from diverse public sources to support toxicological research and risk assessment.
TOXRIC: a comprehensive, free-to-access, online database providing toxicological/feature data. The toxicity labels are retrieved from this database. [PMID: 36400569]


  Chemically structural similarity

Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes approximately 50,000 NPs with experimentally-derived bioactivity available in NPASS)

Similarity is measured using the Tanimoto coefficient (Tc) , which compares the binary fingerprints of two molecules. Tc is calculated as the intersection divided by the union of '1' bits in the fingerprints, ranging from 0 to 1, with 1 indicating highest similarity.

●  The left chart: Distribution of similarity level between NPC249808 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.5 or Top200).

Similarity Score Similarity Level Natural Product ID
0.75 Intermediate Similarity NPC155025
0.5862 Remote Similarity NPC2624
0.5758 Remote Similarity NPC99487
0.5312 Remote Similarity NPC475931
0.5152 Remote Similarity NPC473508

Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC249808 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.5 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
NPD

Bioactivity similarity

  Bioactivity similarity

Similar Natural Products in NPASS

Similarity level is defined by Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.
Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data