Structure

Physi-Chem Properties

Molecular Weight:  332.2
Volume:  353.422
LogP:  3.627
LogD:  1.372
LogS:  -3.206
# Rotatable Bonds:  1
TPSA:  77.76
# H-Bond Aceptor:  4
# H-Bond Donor:  3
# Rings:  3
# Heavy Atoms:  4

MedChem Properties

QED Drug-Likeness Score:  0.681
Synthetic Accessibility Score:  4.26
Fsp3:  0.65
Lipinski Rule-of-5:  Accepted
Pfizer Rule:  Accepted
GSK Rule:  Accepted
BMS Rule:  0
Golden Triangle Rule:  Accepted
Chelating Alert:  1
PAINS Alert:  1

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -4.721
MDCK Permeability:  1.5988714949344285e-05
Pgp-inhibitor:  0.07
Pgp-substrate:  0.546
Human Intestinal Absorption (HIA):  0.022
20% Bioavailability (F20%):  0.91
30% Bioavailability (F30%):  0.595

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.512
Plasma Protein Binding (PPB):  94.95548248291016%
Volume Distribution (VD):  3.566
Pgp-substrate:  7.080443382263184%

ADMET: Metabolism

CYP1A2-inhibitor:  0.055
CYP1A2-substrate:  0.767
CYP2C19-inhibitor:  0.05
CYP2C19-substrate:  0.834
CYP2C9-inhibitor:  0.273
CYP2C9-substrate:  0.867
CYP2D6-inhibitor:  0.045
CYP2D6-substrate:  0.256
CYP3A4-inhibitor:  0.138
CYP3A4-substrate:  0.463

ADMET: Excretion

Clearance (CL):  3.525
Half-life (T1/2):  0.271

ADMET: Toxicity

hERG Blockers:  0.008
Human Hepatotoxicity (H-HT):  0.187
Drug-inuced Liver Injury (DILI):  0.499
AMES Toxicity:  0.033
Rat Oral Acute Toxicity:  0.16
Maximum Recommended Daily Dose:  0.563
Skin Sensitization:  0.92
Carcinogencity:  0.021
Eye Corrosion:  0.003
Eye Irritation:  0.791
Respiratory Toxicity:  0.959

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General Info & Identifiers & Properties  
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Similar NPs/Drugs  

  Natural Product: NPC248068

Natural Product ID:  NPC248068
Common Name*:   6-Alpha-Hydroxydemethyl-Cryptojaponol
IUPAC Name:   (4aS,10R,10aS)-5,6,10-trihydroxy-1,1,4a-trimethyl-7-propan-2-yl-3,4,10,10a-tetrahydro-2H-phenanthren-9-one
Synonyms:  
Standard InCHIKey:  DLFBGJCOHIZRGA-CMKODMSKSA-N
Standard InCHI:  InChI=1S/C20H28O4/c1-10(2)11-9-12-13(16(23)14(11)21)20(5)8-6-7-19(3,4)18(20)17(24)15(12)22/h9-10,17-18,21,23-24H,6-8H2,1-5H3/t17-,18-,20+/m0/s1
SMILES:  O[C@H]1C(=O)c2cc(C(C)C)c(c(c2[C@@]2([C@@H]1C(C)(C)CCC2)C)O)O
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL2252749
PubChem CID:   76326386
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000012] Lipids and lipid-like molecules
      • [CHEMONTID:0000259] Prenol lipids
        • [CHEMONTID:0001551] Diterpenoids

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO17119 Dalea versicolor Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[15043439]
NPO18606 Achyrocline bogotensis Species Asteraceae Eukaryota n.a. Colombian n.a. PMID[15844937]
NPO13465 Salvia broussonetii Species Lamiaceae Eukaryota roots n.a. n.a. PMID[15969497]
NPO3291 Cynanchum auriculatum Species Apocynaceae Eukaryota n.a. root n.a. PMID[18401845]
NPO13135 Campylotropis hirtella Species Fabaceae Eukaryota n.a. n.a. n.a. PMID[19481938]
NPO17362 Alstonia yunnanensis Species Apocynaceae Eukaryota n.a. n.a. n.a. PMID[19775092]
NPO18055 Isodon adenolomus Species Lamiaceae Eukaryota n.a. aerial part n.a. PMID[21534539]
NPO18055 Isodon adenolomus Species Lamiaceae Eukaryota aerial parts Shangrila, Yunnan Province, China 2008-AUG PMID[21534539]
NPO33568 Caryopteris mongolica Species Lamiaceae Eukaryota Roots n.a. n.a. PMID[25958242]
NPO12796 Periploca sepium Species Apocynaceae Eukaryota n.a. n.a. n.a. PMID[28294615]
NPO18676 Clerodendrum trichotomum Species Lamiaceae Eukaryota Roots n.a. n.a. PMID[29924604]
NPO865 Dendrobium loddigesii Species Orchidaceae Eukaryota n.a. n.a. n.a. PMID[31291099]
NPO12148.2 Acer pictum subsp. okamotoanum Subspecies Sapindaceae Eukaryota n.a. n.a. n.a. PMID[9461665]
NPO17362 Alstonia yunnanensis Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO865 Dendrobium loddigesii Species Orchidaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO6731 Ononis spinosa Species Fabaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO7773 Crinum moorei Species Amaryllidaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO3291 Cynanchum auriculatum Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO12796 Periploca sepium Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO18356 Stachys tuberifera Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO13135 Campylotropis hirtella Species Fabaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO18435 Tylophora atrofolliculata Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO865 Dendrobium loddigesii Species Orchidaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO17362 Alstonia yunnanensis Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO18435 Tylophora atrofolliculata Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO6731 Ononis spinosa Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO13135 Campylotropis hirtella Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO7773 Crinum moorei Species Amaryllidaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO18676 Clerodendrum trichotomum Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO12796 Periploca sepium Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO18356 Stachys tuberifera Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO3291 Cynanchum auriculatum Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO17362 Alstonia yunnanensis Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO865 Dendrobium loddigesii Species Orchidaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO6731 Ononis spinosa Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO12796 Periploca sepium Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO3291 Cynanchum auriculatum Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO865 Dendrobium loddigesii Species Orchidaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO12796 Periploca sepium Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO19580 Chamaemelum fuscatum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10638 Plectranthus myrianthus Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10605 Tristania conferta Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17911 Blepharisma japonicum Species Blepharismidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18606 Achyrocline bogotensis Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3873 Crotalaria candicans Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15497 Caria ino Species Riodinidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19777 Pholiota adiposa Species Strophariaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11843 Stephania zippeliana Species Menispermaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22691 Mentha cardiaca Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1257 Distephanus angulifolius Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12565 Hypericum polyanthemum Species Hypericaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4984 Salvia cana Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2377 Cetraria ciliaris Species Parmeliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11190 Veronica polita Species Plantaginaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10922 Pentaclethra macrophylla Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16997 Talaromyces aculeatus Species Trichocomaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19638 Scutellaria albida Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12796 Periploca sepium Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13465 Salvia broussonetii Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5043 Eria japonica Species Orchidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17643 Penicillium pedemontanum Species Aspergillaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4230 Protoparmeliopsis peltata Species Lecanoraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9319 Pterocaulon virgatum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12148.2 Acer pictum subsp. okamotoanum Subspecies Sapindaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10852 Felimare midatlantica Species Chromodorididae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16990 Verbesina virgata Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21720 Talaromyces variabilis Species Trichocomaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17119 Dalea versicolor Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18055 Isodon adenolomus Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18676 Clerodendrum trichotomum Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19522 Arthropsis truncata Species n.a. Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7822.1 Eucalyptus globulus subsp. bicostata Subspecies Myrtaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13832 Aspilia hispida Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8934 Gypsophila perfoliata Species Caryophyllaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19311 Dasymaschalon blumei Species Annonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9532 Vernonia cistifolia Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12091 Martensia denticulata Species Delesseriaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3291 Cynanchum auriculatum Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17783 Sideritis cystosiphon Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13414 Senecio fuertesii Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13135 Campylotropis hirtella Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18356 Stachys tuberifera Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1815 Breonia chinensis Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO526 Salvia sessei Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6289 Ceropegia dichotoma Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16567 Doriopsilla areolata Species Dendrodorididae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17362 Alstonia yunnanensis Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9704 Sonneratia caseolaris Species Lythraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6731 Ononis spinosa Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12205 Eucalyptus apodophylla Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5456 Juniperus drupacea Species Cupressaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23384 Rhodiola semenovii Species Crassulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11576 Glycosmis macrophylla Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7773 Crinum moorei Species Amaryllidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18435 Tylophora atrofolliculata Species Apocynaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO865 Dendrobium loddigesii Species Orchidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT1161 Cell Line CHO Cricetulus griseus LD50 > 100.0 ug ml-1 PMID[479060]
NPT113 Cell Line RAW264.7 Mus musculus IC50 = 9400.0 nM PMID[479062]
NPT776 Organism Spodoptera littoralis Spodoptera littoralis LD50 = 0.98 ug ml-1 PMID[479060]
NPT16 Organism Staphylococcus aureus Staphylococcus aureus IZ = 11.0 mm PMID[479061]
NPT17 Organism Staphylococcus epidermidis Staphylococcus epidermidis IZ = 21.2 mm PMID[479061]
NPT17 Organism Staphylococcus epidermidis Staphylococcus epidermidis IZ = 11.5 mm PMID[479061]
NPT175 Organism Enterococcus faecalis Enterococcus faecalis IZ = 13.8 mm PMID[479061]
NPT16 Organism Staphylococcus aureus Staphylococcus aureus IZ = 22.5 mm PMID[479061]
NPT729 Organism Micrococcus luteus Micrococcus luteus IZ = 17.7 mm PMID[479061]
NPT175 Organism Enterococcus faecalis Enterococcus faecalis IZ = 20.2 mm PMID[479061]
NPT729 Organism Micrococcus luteus Micrococcus luteus IZ = 9.1 mm PMID[479061]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC248068 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9706 High Similarity NPC471853
0.9559 High Similarity NPC230811
0.9333 High Similarity NPC111845
0.9203 High Similarity NPC475957
0.9191 High Similarity NPC138472
0.9191 High Similarity NPC78307
0.9058 High Similarity NPC153088
0.9051 High Similarity NPC4170
0.8986 High Similarity NPC202225
0.8905 High Similarity NPC291001
0.8905 High Similarity NPC471851
0.8873 High Similarity NPC476534
0.8849 High Similarity NPC293454
0.8794 High Similarity NPC277559
0.8794 High Similarity NPC49911
0.8759 High Similarity NPC171460
0.8759 High Similarity NPC196941
0.8759 High Similarity NPC126707
0.8759 High Similarity NPC309169
0.875 High Similarity NPC78364
0.875 High Similarity NPC176130
0.875 High Similarity NPC69424
0.875 High Similarity NPC84672
0.8732 High Similarity NPC61398
0.8732 High Similarity NPC416
0.8707 High Similarity NPC52692
0.8707 High Similarity NPC5568
0.8699 High Similarity NPC75295
0.8696 High Similarity NPC108129
0.8652 High Similarity NPC258502
0.8652 High Similarity NPC103082
0.8643 High Similarity NPC477139
0.8639 High Similarity NPC136878
0.8639 High Similarity NPC474991
0.8633 High Similarity NPC476847
0.863 High Similarity NPC29932
0.8621 High Similarity NPC471971
0.8621 High Similarity NPC471972
0.8621 High Similarity NPC469855
0.8621 High Similarity NPC30846
0.8621 High Similarity NPC184935
0.8621 High Similarity NPC308572
0.8613 High Similarity NPC72667
0.8571 High Similarity NPC258856
0.8552 High Similarity NPC272907
0.8552 High Similarity NPC2681
0.8551 High Similarity NPC3009
0.854 High Similarity NPC254492
0.8529 High Similarity NPC181334
0.8514 High Similarity NPC246229
0.8514 High Similarity NPC191899
0.8503 High Similarity NPC469856
0.8503 High Similarity NPC471906
0.8503 High Similarity NPC79627
0.8503 High Similarity NPC244691
0.8503 High Similarity NPC469854
0.8493 Intermediate Similarity NPC135524
0.8489 Intermediate Similarity NPC276238
0.8489 Intermediate Similarity NPC303910
0.8487 Intermediate Similarity NPC62051
0.8483 Intermediate Similarity NPC470035
0.8478 Intermediate Similarity NPC324209
0.8472 Intermediate Similarity NPC141368
0.8472 Intermediate Similarity NPC469680
0.8472 Intermediate Similarity NPC469681
0.8472 Intermediate Similarity NPC471974
0.8467 Intermediate Similarity NPC142654
0.8467 Intermediate Similarity NPC87985
0.8462 Intermediate Similarity NPC7464
0.8462 Intermediate Similarity NPC315275
0.8456 Intermediate Similarity NPC127046
0.8451 Intermediate Similarity NPC204582
0.8446 Intermediate Similarity NPC470038
0.8446 Intermediate Similarity NPC84786
0.8446 Intermediate Similarity NPC478160
0.8446 Intermediate Similarity NPC68441
0.8435 Intermediate Similarity NPC199936
0.8435 Intermediate Similarity NPC100242
0.8425 Intermediate Similarity NPC92079
0.8425 Intermediate Similarity NPC204045
0.8425 Intermediate Similarity NPC305845
0.8417 Intermediate Similarity NPC234175
0.8411 Intermediate Similarity NPC280295
0.8403 Intermediate Similarity NPC264022
0.8394 Intermediate Similarity NPC199273
0.8389 Intermediate Similarity NPC476535
0.8389 Intermediate Similarity NPC471970
0.838 Intermediate Similarity NPC294226
0.838 Intermediate Similarity NPC314048
0.8369 Intermediate Similarity NPC93015
0.8367 Intermediate Similarity NPC474961
0.8356 Intermediate Similarity NPC3218
0.8355 Intermediate Similarity NPC124842
0.8345 Intermediate Similarity NPC165191
0.8345 Intermediate Similarity NPC245760
0.8345 Intermediate Similarity NPC157284
0.8345 Intermediate Similarity NPC297797
0.8345 Intermediate Similarity NPC477849
0.8345 Intermediate Similarity NPC289358
0.8345 Intermediate Similarity NPC42384
0.8345 Intermediate Similarity NPC51531
0.8345 Intermediate Similarity NPC473779
0.8345 Intermediate Similarity NPC149773
0.8345 Intermediate Similarity NPC46242
0.8345 Intermediate Similarity NPC91887
0.8345 Intermediate Similarity NPC469857
0.8345 Intermediate Similarity NPC50615
0.8345 Intermediate Similarity NPC114333
0.8345 Intermediate Similarity NPC23667
0.8345 Intermediate Similarity NPC473479
0.8345 Intermediate Similarity NPC5014
0.8345 Intermediate Similarity NPC28592
0.8333 Intermediate Similarity NPC123506
0.8333 Intermediate Similarity NPC476821
0.8333 Intermediate Similarity NPC137750
0.8322 Intermediate Similarity NPC225351
0.8321 Intermediate Similarity NPC471187
0.8311 Intermediate Similarity NPC143898
0.8311 Intermediate Similarity NPC478164
0.8302 Intermediate Similarity NPC263212
0.8289 Intermediate Similarity NPC470037
0.8289 Intermediate Similarity NPC225854
0.8288 Intermediate Similarity NPC294330
0.8286 Intermediate Similarity NPC96024
0.8276 Intermediate Similarity NPC477592
0.8276 Intermediate Similarity NPC147418
0.8267 Intermediate Similarity NPC273798
0.8267 Intermediate Similarity NPC143685
0.8267 Intermediate Similarity NPC58752
0.8252 Intermediate Similarity NPC52407
0.8248 Intermediate Similarity NPC282577
0.8248 Intermediate Similarity NPC471794
0.8243 Intermediate Similarity NPC176030
0.8243 Intermediate Similarity NPC291078
0.8243 Intermediate Similarity NPC192597
0.8243 Intermediate Similarity NPC229218
0.8243 Intermediate Similarity NPC169214
0.8243 Intermediate Similarity NPC141817
0.8235 Intermediate Similarity NPC472838
0.8235 Intermediate Similarity NPC306011
0.8235 Intermediate Similarity NPC473201
0.8235 Intermediate Similarity NPC302783
0.8231 Intermediate Similarity NPC169452
0.8231 Intermediate Similarity NPC181560
0.8231 Intermediate Similarity NPC203063
0.8231 Intermediate Similarity NPC473527
0.8224 Intermediate Similarity NPC474310
0.8219 Intermediate Similarity NPC206207
0.8212 Intermediate Similarity NPC470757
0.8212 Intermediate Similarity NPC10842
0.8207 Intermediate Similarity NPC475111
0.8207 Intermediate Similarity NPC471670
0.8207 Intermediate Similarity NPC86524
0.8207 Intermediate Similarity NPC474311
0.82 Intermediate Similarity NPC34482
0.82 Intermediate Similarity NPC170055
0.8194 Intermediate Similarity NPC314257
0.8194 Intermediate Similarity NPC23894
0.8182 Intermediate Similarity NPC17843
0.8182 Intermediate Similarity NPC165612
0.8182 Intermediate Similarity NPC180944
0.8182 Intermediate Similarity NPC70622
0.8182 Intermediate Similarity NPC164912
0.8175 Intermediate Similarity NPC154696
0.817 Intermediate Similarity NPC476532
0.817 Intermediate Similarity NPC48949
0.8169 Intermediate Similarity NPC117609
0.8163 Intermediate Similarity NPC242994
0.8163 Intermediate Similarity NPC138099
0.8163 Intermediate Similarity NPC190457
0.8158 Intermediate Similarity NPC112816
0.8158 Intermediate Similarity NPC264229
0.8158 Intermediate Similarity NPC132810
0.8158 Intermediate Similarity NPC46549
0.8158 Intermediate Similarity NPC94781
0.8156 Intermediate Similarity NPC767
0.8156 Intermediate Similarity NPC247250
0.8156 Intermediate Similarity NPC229894
0.8151 Intermediate Similarity NPC290030
0.8151 Intermediate Similarity NPC471905
0.8151 Intermediate Similarity NPC53001
0.8151 Intermediate Similarity NPC119542
0.8146 Intermediate Similarity NPC285122
0.8146 Intermediate Similarity NPC470570
0.8143 Intermediate Similarity NPC71610
0.8143 Intermediate Similarity NPC15837
0.8138 Intermediate Similarity NPC477596
0.8138 Intermediate Similarity NPC283088
0.8133 Intermediate Similarity NPC48130
0.8133 Intermediate Similarity NPC48762
0.8133 Intermediate Similarity NPC218866
0.8133 Intermediate Similarity NPC84568
0.8133 Intermediate Similarity NPC300684
0.8129 Intermediate Similarity NPC472211
0.8129 Intermediate Similarity NPC15127
0.8129 Intermediate Similarity NPC12818
0.8129 Intermediate Similarity NPC125487
0.8129 Intermediate Similarity NPC93552
0.8129 Intermediate Similarity NPC107109
0.8129 Intermediate Similarity NPC281703

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC248068 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.8446 Intermediate Similarity NPD7422 Clinical (unspecified phase)
0.8082 Intermediate Similarity NPD1509 Clinical (unspecified phase)
0.7838 Intermediate Similarity NPD651 Clinical (unspecified phase)
0.7817 Intermediate Similarity NPD1470 Approved
0.7815 Intermediate Similarity NPD8166 Discontinued
0.7808 Intermediate Similarity NPD943 Approved
0.7698 Intermediate Similarity NPD4196 Clinical (unspecified phase)
0.7667 Intermediate Similarity NPD5406 Approved
0.7667 Intermediate Similarity NPD5404 Approved
0.7667 Intermediate Similarity NPD5408 Approved
0.7667 Intermediate Similarity NPD5405 Approved
0.7662 Intermediate Similarity NPD7390 Discontinued
0.766 Intermediate Similarity NPD1201 Approved
0.7643 Intermediate Similarity NPD3019 Approved
0.7562 Intermediate Similarity NPD2393 Clinical (unspecified phase)
0.7532 Intermediate Similarity NPD6190 Approved
0.753 Intermediate Similarity NPD7473 Discontinued
0.7518 Intermediate Similarity NPD2932 Approved
0.7484 Intermediate Similarity NPD3300 Phase 2
0.7468 Intermediate Similarity NPD4628 Phase 3
0.7455 Intermediate Similarity NPD6232 Discontinued
0.744 Intermediate Similarity NPD5844 Phase 1
0.7421 Intermediate Similarity NPD7458 Discontinued
0.7413 Intermediate Similarity NPD3092 Approved
0.7399 Intermediate Similarity NPD8150 Discontinued
0.7365 Intermediate Similarity NPD6167 Clinical (unspecified phase)
0.7365 Intermediate Similarity NPD6166 Phase 2
0.7365 Intermediate Similarity NPD6168 Clinical (unspecified phase)
0.7362 Intermediate Similarity NPD3882 Suspended
0.7362 Intermediate Similarity NPD4868 Clinical (unspecified phase)
0.7355 Intermediate Similarity NPD7003 Approved
0.7329 Intermediate Similarity NPD3094 Phase 2
0.7314 Intermediate Similarity NPD8397 Clinical (unspecified phase)
0.7285 Intermediate Similarity NPD230 Phase 1
0.7284 Intermediate Similarity NPD1934 Approved
0.7267 Intermediate Similarity NPD6663 Approved
0.7255 Intermediate Similarity NPD3299 Clinical (unspecified phase)
0.7254 Intermediate Similarity NPD3091 Approved
0.7251 Intermediate Similarity NPD7993 Clinical (unspecified phase)
0.7241 Intermediate Similarity NPD9269 Phase 2
0.7241 Intermediate Similarity NPD8055 Clinical (unspecified phase)
0.723 Intermediate Similarity NPD5736 Approved
0.7222 Intermediate Similarity NPD3026 Approved
0.7222 Intermediate Similarity NPD3023 Approved
0.7219 Intermediate Similarity NPD3620 Phase 2
0.7219 Intermediate Similarity NPD3619 Clinical (unspecified phase)
0.7214 Intermediate Similarity NPD5951 Approved
0.7203 Intermediate Similarity NPD3025 Approved
0.7203 Intermediate Similarity NPD3024 Approved
0.7186 Intermediate Similarity NPD6959 Discontinued
0.7179 Intermediate Similarity NPD7421 Clinical (unspecified phase)
0.7174 Intermediate Similarity NPD4141 Clinical (unspecified phase)
0.717 Intermediate Similarity NPD2533 Approved
0.717 Intermediate Similarity NPD2532 Approved
0.717 Intermediate Similarity NPD2534 Approved
0.716 Intermediate Similarity NPD4380 Phase 2
0.7135 Intermediate Similarity NPD7879 Clinical (unspecified phase)
0.7134 Intermediate Similarity NPD2801 Approved
0.7125 Intermediate Similarity NPD6273 Approved
0.7125 Intermediate Similarity NPD1512 Approved
0.7114 Intermediate Similarity NPD9494 Approved
0.7113 Intermediate Similarity NPD405 Clinical (unspecified phase)
0.7108 Intermediate Similarity NPD7075 Discontinued
0.7101 Intermediate Similarity NPD3022 Approved
0.7101 Intermediate Similarity NPD3021 Approved
0.7099 Intermediate Similarity NPD5808 Clinical (unspecified phase)
0.7099 Intermediate Similarity NPD3226 Approved
0.7086 Intermediate Similarity NPD3764 Approved
0.7076 Intermediate Similarity NPD3818 Discontinued
0.7073 Intermediate Similarity NPD37 Approved
0.7066 Intermediate Similarity NPD6234 Discontinued
0.7063 Intermediate Similarity NPD4378 Clinical (unspecified phase)
0.7056 Intermediate Similarity NPD6535 Approved
0.7056 Intermediate Similarity NPD6534 Approved
0.7055 Intermediate Similarity NPD6599 Discontinued
0.7051 Intermediate Similarity NPD2346 Discontinued
0.7044 Intermediate Similarity NPD7236 Approved
0.7034 Intermediate Similarity NPD3095 Discontinued
0.7034 Intermediate Similarity NPD3412 Clinical (unspecified phase)
0.703 Intermediate Similarity NPD7096 Clinical (unspecified phase)
0.703 Intermediate Similarity NPD7819 Suspended
0.7029 Intermediate Similarity NPD3534 Clinical (unspecified phase)
0.7024 Intermediate Similarity NPD5494 Approved
0.702 Intermediate Similarity NPD5952 Clinical (unspecified phase)
0.7007 Intermediate Similarity NPD3972 Approved
0.7 Intermediate Similarity NPD1511 Approved
0.6988 Remote Similarity NPD8443 Clinical (unspecified phase)
0.6987 Remote Similarity NPD6099 Approved
0.6987 Remote Similarity NPD6100 Approved
0.6982 Remote Similarity NPD8127 Discontinued
0.6972 Remote Similarity NPD2629 Approved
0.6971 Remote Similarity NPD5034 Approved
0.6971 Remote Similarity NPD4954 Approved
0.6971 Remote Similarity NPD36 Approved
0.6971 Remote Similarity NPD5028 Approved
0.6971 Remote Similarity NPD4955 Approved
0.6971 Remote Similarity NPD5026 Approved
0.697 Remote Similarity NPD6801 Discontinued
0.6966 Remote Similarity NPD9268 Approved
0.6957 Remote Similarity NPD7004 Clinical (unspecified phase)
0.6954 Remote Similarity NPD6797 Phase 2
0.6946 Remote Similarity NPD4967 Phase 2
0.6946 Remote Similarity NPD4966 Approved
0.6946 Remote Similarity NPD4965 Approved
0.694 Remote Similarity NPD7699 Phase 2
0.694 Remote Similarity NPD7700 Phase 2
0.6933 Remote Similarity NPD7239 Suspended
0.6932 Remote Similarity NPD8313 Approved
0.6932 Remote Similarity NPD8312 Approved
0.6928 Remote Similarity NPD1465 Phase 2
0.6923 Remote Similarity NPD1510 Phase 2
0.6918 Remote Similarity NPD7163 Clinical (unspecified phase)
0.6914 Remote Similarity NPD7251 Discontinued
0.6914 Remote Similarity NPD5030 Phase 2
0.691 Remote Similarity NPD8434 Phase 2
0.691 Remote Similarity NPD5038 Approved
0.691 Remote Similarity NPD5037 Approved
0.6908 Remote Similarity NPD7008 Discontinued
0.6903 Remote Similarity NPD1607 Approved
0.6899 Remote Similarity NPD970 Clinical (unspecified phase)
0.6897 Remote Similarity NPD7074 Phase 3
0.6889 Remote Similarity NPD2490 Approved
0.6889 Remote Similarity NPD2488 Approved
0.6886 Remote Similarity NPD3817 Phase 2
0.6883 Remote Similarity NPD4060 Phase 1
0.6879 Remote Similarity NPD2935 Discontinued
0.6879 Remote Similarity NPD7228 Approved
0.6875 Remote Similarity NPD4338 Clinical (unspecified phase)
0.6875 Remote Similarity NPD7910 Clinical (unspecified phase)
0.6865 Remote Similarity NPD6782 Approved
0.6865 Remote Similarity NPD6780 Approved
0.6865 Remote Similarity NPD6778 Approved
0.6865 Remote Similarity NPD6781 Approved
0.6865 Remote Similarity NPD6779 Approved
0.6865 Remote Similarity NPD6776 Approved
0.6865 Remote Similarity NPD6777 Approved
0.6861 Remote Similarity NPD1237 Approved
0.6854 Remote Similarity NPD5036 Approved
0.6852 Remote Similarity NPD7410 Clinical (unspecified phase)
0.6846 Remote Similarity NPD4379 Clinical (unspecified phase)
0.6839 Remote Similarity NPD7054 Approved
0.6836 Remote Similarity NPD5035 Approved
0.6835 Remote Similarity NPD2342 Discontinued
0.6831 Remote Similarity NPD7635 Approved
0.6815 Remote Similarity NPD2799 Discontinued
0.6813 Remote Similarity NPD6398 Clinical (unspecified phase)
0.6809 Remote Similarity NPD8320 Phase 1
0.6809 Remote Similarity NPD8319 Approved
0.68 Remote Similarity NPD7472 Approved
0.68 Remote Similarity NPD1283 Approved
0.6795 Remote Similarity NPD6651 Approved
0.6792 Remote Similarity NPD1549 Phase 2
0.6791 Remote Similarity NPD2491 Approved
0.679 Remote Similarity NPD6143 Clinical (unspecified phase)
0.6783 Remote Similarity NPD4869 Clinical (unspecified phase)
0.6781 Remote Similarity NPD9545 Approved
0.678 Remote Similarity NPD7808 Phase 3
0.6774 Remote Similarity NPD1240 Approved
0.6755 Remote Similarity NPD7435 Discontinued
0.6755 Remote Similarity NPD1164 Approved
0.675 Remote Similarity NPD2800 Approved
0.675 Remote Similarity NPD6674 Discontinued
0.6748 Remote Similarity NPD4160 Clinical (unspecified phase)
0.6743 Remote Similarity NPD7804 Clinical (unspecified phase)
0.6735 Remote Similarity NPD1651 Approved
0.673 Remote Similarity NPD1550 Clinical (unspecified phase)
0.673 Remote Similarity NPD7266 Discontinued
0.673 Remote Similarity NPD1552 Clinical (unspecified phase)
0.6723 Remote Similarity NPD5027 Approved
0.6723 Remote Similarity NPD6559 Discontinued
0.6723 Remote Similarity NPD5031 Approved
0.6723 Remote Similarity NPD5029 Approved
0.6723 Remote Similarity NPD7685 Pre-registration
0.6721 Remote Similarity NPD6213 Phase 3
0.6721 Remote Similarity NPD6212 Phase 3
0.6721 Remote Similarity NPD6214 Clinical (unspecified phase)
0.6714 Remote Similarity NPD9265 Clinical (unspecified phase)
0.6708 Remote Similarity NPD3750 Approved
0.6707 Remote Similarity NPD7411 Suspended
0.6706 Remote Similarity NPD4381 Clinical (unspecified phase)
0.6705 Remote Similarity NPD4956 Approved
0.6705 Remote Similarity NPD7184 Clinical (unspecified phase)
0.6702 Remote Similarity NPD3057 Approved
0.6702 Remote Similarity NPD3448 Approved
0.6689 Remote Similarity NPD4059 Approved
0.6689 Remote Similarity NPD4626 Approved
0.6687 Remote Similarity NPD6799 Approved
0.6687 Remote Similarity NPD3455 Phase 2
0.6686 Remote Similarity NPD7199 Phase 2
0.6686 Remote Similarity NPD3751 Discontinued
0.6686 Remote Similarity NPD7177 Discontinued
0.6667 Remote Similarity NPD7696 Phase 3
0.6667 Remote Similarity NPD7697 Approved
0.6667 Remote Similarity NPD4208 Discontinued
0.6667 Remote Similarity NPD7698 Approved
0.6667 Remote Similarity NPD4878 Approved
0.6667 Remote Similarity NPD2796 Approved
0.6667 Remote Similarity NPD6831 Clinical (unspecified phase)
0.6667 Remote Similarity NPD6980 Clinical (unspecified phase)
0.6649 Remote Similarity NPD2494 Approved

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data