NPASS Compound

Natural Product: NPC228130

Natural Product ID	NPC228130
Common Name ? The InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.	FEDVOJBETKNLSY-OMJPMECBSA-N
IUPAC Name	n.a.
Synonyms
Synthetic Gene Cluster	n.a.
ChEMBL Identifier	n.a.
PubChem CID	n.a.
Chemical Classification	CHEMONTID:0000000 [Organic compounds] [CHEMONTID:0000012] Lipids and lipid-like molecules [CHEMONTID:0000259] Prenol lipids [CHEMONTID:0001551] Diterpenoids

The Chemical Classification was calculated by Classyfire, a software for chemical taxonomy calculation. Reference: DOI:10.1186/s13321-016-0174-y.

Chemical Representations

RDKit 3D 110114 0 0 0 0 0 0 0 0999 V2000 -2.3127 -0.6352 -2.1942 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.9664 -1.5352 -1.3273 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.9251 -2.4945 -0.7557 C 0 0 0 0 0 0 0 0 0 0 0 0 -4.3670 -2.2016 -0.9461 C 0 0 0 0 0 0 0 0 0 0 0 0 -4.8368 -0.9900 -0.2394 C 0 0 2 0 0 0 0 0 0 0 0 0 -4.6479 -1.1873 1.2465 C 0 0 0 0 0 0 0 0 0 0 0 0 -4.5232 -2.3019 1.8758 C 0 0 0 0 0 0 0 0 0 0 0 0 -4.6669 0.1062 2.0212 C 0 0 0 0 0 0 0 0 0 0 0 0 -5.8782 0.9102 1.5285 C 0 0 0 0 0 0 0 0 0 0 0 0 -6.8157 -0.0334 0.8191 C 0 0 2 0 0 0 0 0 0 0 0 0 -6.2667 -0.5815 -0.4809 C 0 0 1 0 0 0 0 0 0 0 0 0 -6.3049 0.4126 -1.6026 C 0 0 0 0 0 0 0 0 0 0 0 0 -7.1222 -1.7559 -0.8641 C 0 0 0 0 0 0 0 0 0 0 0 0 -8.5775 -1.4966 -0.8352 C 0 0 0 0 0 0 0 0 0 0 0 0 -9.0480 -0.1977 -0.3051 C 0 0 0 0 0 0 0 0 0 0 0 0 -8.2197 0.4531 0.7412 C 0 0 1 0 0 0 0 0 0 0 0 0 -8.9358 0.2741 2.0944 C 0 0 0 0 0 0 0 0 0 0 0 0 -8.2373 1.9191 0.4976 C 0 0 0 0 0 0 0 0 0 0 0 0 -8.8028 2.3719 -0.5505 O 0 0 0 0 0 0 0 0 0 0 0 0 -7.6822 2.8668 1.3258 O 0 0 0 0 0 0 0 0 0 0 0 0 -7.7217 4.2596 1.0555 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.5438 -1.6263 -0.9005 C 0 0 1 0 0 0 0 0 0 0 0 0 0.3495 -0.6562 -1.6432 C 0 0 0 0 0 0 0 0 0 0 0 0 1.7524 -1.1053 -1.3350 C 0 0 0 0 0 0 0 0 0 0 0 0 2.0733 -1.4032 -0.0948 C 0 0 0 0 0 0 0 0 0 0 0 0 1.0483 -1.2963 0.9692 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.3636 -1.3917 0.5580 C 0 0 0 0 0 0 0 0 0 0 0 0 3.4736 -1.7897 0.3072 C 0 0 0 0 0 0 0 0 0 0 0 0 4.4923 -1.6790 -0.7362 C 0 0 0 0 0 0 0 0 0 0 0 0 4.7961 -0.3117 -1.2029 C 0 0 2 0 0 0 0 0 0 0 0 0 5.7985 -0.5196 -2.3473 C 0 0 0 0 0 0 0 0 0 0 0 0 5.4613 -0.2590 -3.5855 C 0 0 0 0 0 0 0 0 0 0 0 0 7.1348 -1.0180 -2.0115 C 0 0 0 0 0 0 0 0 0 0 0 0 7.7702 0.0800 -1.1299 C 0 0 0 0 0 0 0 0 0 0 0 0 6.8613 0.1968 0.0858 C 0 0 2 0 0 0 0 0 0 0 0 0 5.4852 0.6385 -0.2985 C 0 0 1 0 0 0 0 0 0 0 0 0 5.5865 1.9519 -1.1325 C 0 0 0 0 0 0 0 0 0 0 0 0 4.7711 1.0312 0.9368 C 0 0 0 0 0 0 0 0 0 0 0 0 5.3989 2.3533 1.4510 C 0 0 0 0 0 0 0 0 0 0 0 0 6.8477 2.1636 1.7183 C 0 0 0 0 0 0 0 0 0 0 0 0 7.5366 0.9808 1.1448 C 0 0 1 0 0 0 0 0 0 0 0 0 7.7928 0.0243 2.3350 C 0 0 0 0 0 0 0 0 0 0 0 0 8.9320 1.3589 0.6845 C 0 0 0 0 0 0 0 0 0 0 0 0 9.9232 0.9312 1.3130 O 0 0 0 0 0 0 0 0 0 0 0 0 9.1617 2.1645 -0.4098 O 0 0 0 0 0 0 0 0 0 0 0 0 10.4964 2.4656 -0.7639 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.3290 -0.5546 -2.5386 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.6267 0.0900 -2.6237 H 0 0 0 0 0 0 0 0 0 0 0 0 -2.7311 -3.4619 -1.3336 H 0 0 0 0 0 0 0 0 0 0 0 0 -2.6293 -2.7888 0.2828 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.5384 -2.1513 -2.0521 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.9195 -3.1326 -0.6409 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.1410 -0.1418 -0.4697 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.5304 -3.3157 1.4695 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.3882 -2.2898 2.9674 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.7329 0.6794 1.8837 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.7977 -0.0724 3.1001 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.4537 1.2643 2.4345 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.6018 1.7966 0.9641 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.8555 -0.9435 1.4997 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.3342 1.4647 -1.2535 H 0 0 0 0 0 0 0 0 0 0 0 0 -7.2195 0.2847 -2.2536 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.4558 0.3484 -2.3106 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.8249 -2.6135 -0.2176 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.8442 -2.0070 -1.9303 H 0 0 0 0 0 0 0 0 0 0 0 0 -9.0528 -2.3583 -0.2700 H 0 0 0 0 0 0 0 0 0 0 0 0 -9.0467 -1.6089 -1.8618 H 0 0 0 0 0 0 0 0 0 0 0 0 -10.0711 -0.3945 0.1401 H 0 0 0 0 0 0 0 0 0 0 0 0 -9.3064 0.5142 -1.1506 H 0 0 0 0 0 0 0 0 0 0 0 0 -9.9906 -0.0187 1.9357 H 0 0 0 0 0 0 0 0 0 0 0 0 -8.3718 -0.4943 2.6756 H 0 0 0 0 0 0 0 0 0 0 0 0 -8.9024 1.2077 2.6919 H 0 0 0 0 0 0 0 0 0 0 0 0 -8.7527 4.6093 1.3444 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.9948 4.8012 1.6865 H 0 0 0 0 0 0 0 0 0 0 0 0 -7.5112 4.5064 -0.0004 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.1552 -2.6771 -1.0992 H 0 0 0 0 0 0 0 0 0 0 0 0 0.1689 -0.7507 -2.7398 H 0 0 0 0 0 0 0 0 0 0 0 0 0.1507 0.3711 -1.2969 H 0 0 0 0 0 0 0 0 0 0 0 0 2.4291 -1.2025 -2.1561 H 0 0 0 0 0 0 0 0 0 0 0 0 1.2710 -2.0094 1.8007 H 0 0 0 0 0 0 0 0 0 0 0 0 1.2034 -0.2848 1.4556 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.9432 -0.4578 0.8344 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.8784 -2.1996 1.1575 H 0 0 0 0 0 0 0 0 0 0 0 0 3.7028 -1.2863 1.2241 H 0 0 0 0 0 0 0 0 0 0 0 0 3.3410 -2.8964 0.5908 H 0 0 0 0 0 0 0 0 0 0 0 0 4.1428 -2.3336 -1.6075 H 0 0 0 0 0 0 0 0 0 0 0 0 5.3997 -2.2377 -0.3868 H 0 0 0 0 0 0 0 0 0 0 0 0 3.9546 0.2256 -1.6884 H 0 0 0 0 0 0 0 0 0 0 0 0 4.4582 0.1083 -3.7977 H 0 0 0 0 0 0 0 0 0 0 0 0 6.1215 -0.3856 -4.4315 H 0 0 0 0 0 0 0 0 0 0 0 0 7.1237 -1.9290 -1.3813 H 0 0 0 0 0 0 0 0 0 0 0 0 7.7780 -1.1571 -2.9096 H 0 0 0 0 0 0 0 0 0 0 0 0 7.7778 0.9638 -1.7653 H 0 0 0 0 0 0 0 0 0 0 0 0 8.7407 -0.2824 -0.7847 H 0 0 0 0 0 0 0 0 0 0 0 0 6.7491 -0.8633 0.4385 H 0 0 0 0 0 0 0 0 0 0 0 0 6.3813 2.5981 -0.7777 H 0 0 0 0 0 0 0 0 0 0 0 0 5.7667 1.7406 -2.1902 H 0 0 0 0 0 0 0 0 0 0 0 0 4.6234 2.4876 -1.0404 H 0 0 0 0 0 0 0 0 0 0 0 0 4.9076 0.3702 1.8164 H 0 0 0 0 0 0 0 0 0 0 0 0 3.7122 1.2272 0.7952 H 0 0 0 0 0 0 0 0 0 0 0 0 4.8763 2.5591 2.4039 H 0 0 0 0 0 0 0 0 0 0 0 0 5.1746 3.1909 0.7746 H 0 0 0 0 0 0 0 0 0 0 0 0 7.3886 3.0752 1.3155 H 0 0 0 0 0 0 0 0 0 0 0 0 7.0772 2.2285 2.8274 H 0 0 0 0 0 0 0 0 0 0 0 0 8.6729 -0.6291 2.0573 H 0 0 0 0 0 0 0 0 0 0 0 0 6.9387 -0.6092 2.5520 H 0 0 0 0 0 0 0 0 0 0 0 0 8.1427 0.6675 3.1580 H 0 0 0 0 0 0 0 0 0 0 0 0 11.2259 2.2315 0.0349 H 0 0 0 0 0 0 0 0 0 0 0 0 10.8272 1.9207 -1.6814 H 0 0 0 0 0 0 0 0 0 0 0 0 10.5251 3.5588 -1.0392 H 0 0 0 0 0 0 0 0 0 0 0 0 1 2 2 0 2 3 1 0 3 4 1 0 4 5 1 0 5 6 1 0 6 7 2 0 6 8 1 0 8 9 1 0 9 10 1 0 10 11 1 0 11 12 1 6 11 13 1 0 13 14 1 0 14 15 1 0 15 16 1 0 16 17 1 1 16 18 1 0 18 19 2 0 18 20 1 0 20 21 1 0 2 22 1 0 22 23 1 0 23 24 1 0 24 25 2 0 25 26 1 0 26 27 1 0 25 28 1 0 28 29 1 0 29 30 1 0 30 31 1 0 31 32 2 0 31 33 1 0 33 34 1 0 34 35 1 0 35 36 1 0 36 37 1 6 36 38 1 0 38 39 1 0 39 40 1 0 40 41 1 0 41 42 1 1 41 43 1 0 43 44 2 0 43 45 1 0 45 46 1 0 11 5 1 0 27 22 1 0 36 30 1 0 16 10 1 0 41 35 1 0 1 47 1 0 1 48 1 0 3 49 1 0 3 50 1 0 4 51 1 0 4 52 1 0 5 53 1 6 7 54 1 0 7 55 1 0 8 56 1 0 8 57 1 0 9 58 1 0 9 59 1 0 10 60 1 1 12 61 1 0 12 62 1 0 12 63 1 0 13 64 1 0 13 65 1 0 14 66 1 0 14 67 1 0 15 68 1 0 15 69 1 0 17 70 1 0 17 71 1 0 17 72 1 0 21 73 1 0 21 74 1 0 21 75 1 0 22 76 1 1 23 77 1 0 23 78 1 0 24 79 1 0 26 80 1 0 26 81 1 0 27 82 1 0 27 83 1 0 28 84 1 0 28 85 1 0 29 86 1 0 29 87 1 0 30 88 1 6 32 89 1 0 32 90 1 0 33 91 1 0 33 92 1 0 34 93 1 0 34 94 1 0 35 95 1 1 37 96 1 0 37 97 1 0 37 98 1 0 38 99 1 0 38100 1 0 39101 1 0 39102 1 0 40103 1 0 40104 1 0 42105 1 0 42106 1 0 42107 1 0 46108 1 0 46109 1 0 46110 1 0 M END

Standard InCHIKey	FEDVOJBETKNLSY-OMJPMECBSA-N
Standard InCHI	InChI=1S/C42H64O4/c1-28(12-20-33-29(2)13-22-35-39(33,4)24-10-26-41(35,6)37(43)45-8)32-18-15-31(16-19-32)17-21-34-30(3)14-23-36-40(34,5)25-11-27-42(36,7)38(44)46-9/h15,32-36H,1-3,10-14,16-27H2,4-9H3/t32-,33+,34+,35+,36+,39+,40+,41-,42-/m0/s1
SMILES	C=C(CC[C@@H]1C(=C)CC[C@@H]2[C@]1(C)CCC[C@]2(C)C(=O)OC)[C@H]1CC=C(CC1)CC[C@@H]1C(=C)CC[C@@H]2[C@]1(C)CCC[C@]2(C)C(=O)OC

Calculated Properties

Physi-Chem Properties

Molecular Weight:	632.48	Volume:	711.548 ? Van der Waals volume.
Dense:	0.889	LogP:	7.53 ? The logarithm of the n-octanol/water distribution coefficients.
logD7.4:	5.145 ? The logarithm of the n-octanol/water distribution coefficient at pH=7.4.	LogS:	-8.32 ? The logarithm of aqueous solubility value.
Rotatable Bonds:	11.0	Rigid Bonds:	33.0
TPSA:	52.6 ? Topological Polar Surface Area.	H-Bond Acceptor:	4.0
H-Bond Donor:	0.0	Rings:	5.0
Heavy Atoms:	4.0

MedChem Properties

QED Drug-Likeness Score:	0.187	GASA:	1.0 ? GASA represents the probability of being difficult to synthesize, ranging from 0 to 1.
Synthetic Accessibility Score:	5.358	Fsp³:	0.762
MCE-18:	98.595 ? MCE-18 stands for medicinal chemistry evolution.MCE-18≥45 is considered a suitable value.	Lipinski Rule-of-5:	Accepted
Pfizer Rule:	Accepted	GSK Rule:	Accepted
Golden Triangle Rule:	Accepted	BMS Rule:	0
Chelating Alert:	0	PAINS Alert:	0
Colloidal aggregators:	0.984	Fluc inhibitor:	0.013 ? The fluc inhibitor value is the probability of being fLuc inhibitors, within the range of 0 to 1.
Blue fluorescence:	0.002 ? The blue fluorescence value is the probability of being blue fluorescence, within the range of 0 to 1	Green fluorescence:	0.0 ? The green fluorescence value is the probability of being green fluorescence, within the range of 0 to 1
Reactive compounds:	0.669	Promiscuous compounds:	0.022

ADMET Properties (ADMETlab3.0)

ADMET: Absorption

Caco-2 Permeability:	-4.665	MDCK Permeability:	-4.812
Pgp-inhibitor:	0.999	Pgp-substrate:	0.0
PAMPA:	0.0 ? The experimental data for Peff was logarithmically transformed (logPeff). Molecules with log Peff values below 2.0 were classified as low-permeability (Category 0), while those with log Peff values exceeding 2.5 were classified as high-permeability (Category 1).	Human Intestinal Absorption (HIA):	0.0
20% Bioavailability (F20%):	0.073	30% Bioavailability (F30%):	0.032
50% Bioavailability (F50%):	0.921

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):	0.931	MRP1:	1.0
Plasma Protein Binding (PPB):	98.376%	Volume Distribution (VD):	0.239
Fu:	0.826% ? The fraction unbound in plasms.	OATP1B1 inhibitor:	1.0
OATP1B3 inhibitor:	1.0	BCRP inhibitor:	0.086
BSEP inhibitor:	1.0

ADMET: Metabolism

CYP1A2-inhibitor:	0.925	CYP1A2-substrate:	0.045
CYP2C19-inhibitor:	0.998	CYP2C19-substrate:	0.038
CYP2C9-inhibitor:	0.021	CYP2C9-substrate:	0.004
CYP2D6-inhibitor:	0.032	CYP2D6-substrate:	0.86
CYP3A4-inhibitor:	1.0	CYP3A4-substrate:	1.0
CYP2B6-substrate:	0.929	CYP2C8-inhibitor:	1.0
HLM stability:	0.946 ? Human liver microsomal (HLM) stability. Category 0: stable+ (HLM > 30 min); Category 1: unstable- (HLM ≤ 30 min). The output value is the probability of human liver microsomal instability, where a value closer to 1 indicates a higher likelihood of instability.

ADMET: Excretion

Clearance (CL):

7.763

Half-life (T1/2):

0.217

ADMET: Toxicity

hERG Blockers:	0.25	hERG Blockers (10um):	0.563
Human Hepatotoxicity (H-HT):	0.817	Drug-induced Liver Injury (DILI):	0.233
AMES Toxicity:	0.041	Rat Oral Acute Toxicity:	0.526
Maximum Recommended Daily Dose:	0.995	Skin Sensitization:	0.995
Carcinogencity:	0.938	Eye Corrosion:	0.001
Eye Irritation:	0.373	Respiratory Toxicity:	0.984
Drug-induced Neurotoxicity:	0.556	Ototoxicity:	0.495
Hematotoxicity:	0.354	Drug-induced Nephrotoxicity:	0.919
Genotoxicity:	0.781	RPMI-8226 Immunitoxicity:	0.087
A549 Cytotoxicity:	0.597	Hek293 Cytotoxicity:	0.925
BCF:	2.44 ? Bioconcentration factors are used for considering secondary poisoning potential and assessing risks to human health via the food chain. The unit is -log10[(mg/L)/(1000*MW)].	IGC50:	6.024 ? 48 hour Tetrahymena pyriformis IGC50. The unit of IGC50 is -log10[(mg/L)/(1000*MW)].
LC50DM:	6.922 ? 48 hour Daphnia magna LC50. The unit of LC50DM is -log10[(mg/L)/(1000*MW)].	LC50FM:	6.846 ? 96 hour fathead minnow LC50. The unit of LC50FM is -log10[(mg/L)/(1000*MW)].

Species Source

Organism ID	Organism Name	Taxonomy Level	Family	SuperKingdom	Isolation Part	Collection Location	Collection Time	Reference
NPO21902	Thalictrum sachalinense	Species	Ranunculaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO23029	Tetradenia riparia	Species	Lamiaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO21769	Pterocarpus dalbergioides	Species	Fabaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO23197	Juniperus oxycedrus	Species	Cupressaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO22349	Cucumaria frondosa	Species	Cucumariidae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO19830	Chamonixia caespitosa	Species	Boletaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO20157	Boykinia tellimoides	Species	Saxifragaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO13434	Acremonium furcatum	Species	Plectosphaerellaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO23197	Juniperus oxycedrus	Species	Cupressaceae	Eukaryota	n.a.	n.a.	n.a.	Database[HerDing]
NPO23197	Juniperus oxycedrus	Species	Cupressaceae	Eukaryota	n.a.	n.a.	n.a.	Database[TCMID]
NPO19830	Chamonixia caespitosa	Species	Boletaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO23029	Tetradenia riparia	Species	Lamiaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO21769	Pterocarpus dalbergioides	Species	Fabaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO13434	Acremonium furcatum	Species	Plectosphaerellaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO23197	Juniperus oxycedrus	Species	Cupressaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO20157	Boykinia tellimoides	Species	Saxifragaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO22349	Cucumaria frondosa	Species	Cucumariidae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO21902	Thalictrum sachalinense	Species	Ranunculaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]

Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
☉ UNPD: Universal Natural Products Database [PMID: 23638153].
☉ StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
☉ TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
☉ TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
☉ TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
☉ TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
☉ HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
☉ MetaboLights: a metabolomics database [PMID: 27010336].
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

NP Quantity Composition/Concentration

Organism ID	Organism Name	Organism Material Preparation	Organism Part	NP Quantity (Standard)	NP Quantity (Minimum)	NP Quantity (Maximum)	Quantity Unit	Reference

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
☉ DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
☉ PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

Biological Activity

Molecular-level activity

Target ID	Target Type	Target Name	Target Organism	Activity Type	Activity Relation	Value	Unit	Reference

In vitro activity

Target ID	Target Type	Target Name	Target Organism	Activity Type	Activity Relation	Value	Unit	Reference

In vivo activity

Target ID	Target Type	Target Name	Target Organism	Activity Type	Activity Relation	Value	Unit	Reference

Experimental ADME

Experiment Model	Experiment Tissue	ADME Type	ADME Relation	ADME Value	ADME Unit	Reference

Experimental Toxicity

Quantitative toxicity

Experiment Model	Experiment Organism	Toxicity Type	Toxicity Relation	Toxicity Value	Toxicity Unit	Reference

Common Abbreviations:
LC: Lethal Concentration; LD: Lethal Dose; LT:Lethal Time; NOAEL: No-observed-adverse-effect Level; BMDL: Benchmark Dose Lower Confidence Limit; BMD: Benchmark Dose; BMC:Benchmark Concentration; LOAEL: Lowest Observed Adverse Effect Level; RfD:Reference Dose; RfC:Reference Concentration; MRL: Minimal Risk Level; MEG: Maximum Exposure Guideline; PAC: Protective Action Criteria

Categorical toxicity labels

Hepatotoxicity	Carcinogenicity	Mutagenicity	Cardiotoxicity	Respiratory Toxicity	Eye Irritation	Endocrine Disruption

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP toxicity records from domain-specific databases. These databases include:
☉ ToxValDB: a curated database that compiles quantitative toxicity values for chemicals from diverse public sources to support toxicological research and risk assessment.
☉ TOXRIC: a comprehensive, free-to-access, online database providing toxicological/feature data. The toxicity labels are retrieved from this database. [PMID: 36400569]

Chemically structural similarity

Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes approximately 50,000 NPs with experimentally-derived bioactivity available in NPASS)

Similarity is measured using the Tanimoto coefficient (Tc) , which compares the binary fingerprints of two molecules. Tc is calculated as the intersection divided by the union of '1' bits in the fingerprints, ranging from 0 to 1, with 1 indicating highest similarity.

● The left chart: Distribution of similarity level between NPC228130 and all remaining natural products in the NPASS database.
● The right table: Most similar natural products (Tc>=0.5 or Top200).

range	Tanimoto Coefficient
0-0.1	21895
0.1-0.2	24896
0.2-0.3	2812
0.3-0.4	201
0.4-0.5	49
0.5-0.6	5
0.6-0.7	1
0.7-0.8	0
0.8-0.85	0
0.85-0.9	0
0.9-0.95	0
0.95-1	0

Similarity Score	Similarity Level	Natural Product ID
0.6667	Remote Similarity	NPC200513
0.5536	Remote Similarity	NPC166797
0.5455	Remote Similarity	NPC185587
0.5439	Remote Similarity	NPC899
0.5085	Remote Similarity	NPC144947
0.5077	Remote Similarity	NPC16922

Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

● The left chart: Distribution of similarity level between NPC228130 and all drugs/candidates.
● The right table: Most similar clinical/approved drugs (Tc>=0.5 or Top200).

range	Tanimoto Coefficient
0-0.1	7259
0.1-0.2	1831
0.2-0.3	56
0.3-0.4	3
0.4-0.5	0
0.5-0.6	0
0.6-0.7	1
0.7-0.8	0
0.8-0.85	0
0.85-0.9	0
0.9-0.95	0
0.95-1	0

Similarity Score	Similarity Level	Drug ID	Developmental Stage
0.6667	Remote Similarity	NPD4752	Clinical (unspecified phase)

Bioactivity similarity

Similar Natural Products in NPASS

Similarity level is defined by Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
☉ A: chemistry similarity;
☉ B: biological targets similarity;
☉ C: networks similarity;
☉ D: cell-based bioactivity similarity;
☉ E: similarity based on clinical data.
Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity

B: biological targets similarity

C: networks similarity

D: cell-based bioactivity similarity

E: similarity based on clinical data