NPASS Compound

Natural Product: NPC134967

Natural Product ID	NPC134967
Common Name ? The InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.	HZIBYJCDCHVSPK-HDBHZJCMSA-N
IUPAC Name	n.a.
Synonyms
Synthetic Gene Cluster	n.a.
ChEMBL Identifier	CHEMBL374008
PubChem CID	44418831
Chemical Classification	CHEMONTID:0000000 [Organic compounds] [CHEMONTID:0000012] Lipids and lipid-like molecules [CHEMONTID:0000258] Steroids and steroid derivatives [CHEMONTID:0001013] Steroidal glycosides [CHEMONTID:0002364] Steroidal saponins [CHEMONTID:0001687] Cucurbitacin glycosides

The Chemical Classification was calculated by Classyfire, a software for chemical taxonomy calculation. Reference: DOI:10.1186/s13321-016-0174-y.

Chemical Representations

RDKit 3D 106113 0 0 0 0 0 0 0 0999 V2000 -2.5104 -5.1004 2.2169 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.4693 -4.2473 0.9771 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.9257 -4.6682 -0.1101 O 0 0 0 0 0 0 0 0 0 0 0 0 -1.9261 -2.9940 1.0363 O 0 0 0 0 0 0 0 0 0 0 0 0 -1.8391 -2.1021 -0.0870 C 0 0 2 0 0 0 0 0 0 0 0 0 -0.3988 -1.8935 -0.4499 C 0 0 0 0 0 0 0 0 0 0 0 0 0.2408 -0.6730 0.0806 C 0 0 1 0 0 0 0 0 0 0 0 0 1.2087 -0.8509 1.2974 C 0 0 0 0 0 0 0 0 0 0 0 0 1.6724 -0.5114 -0.0449 C 0 0 1 0 0 0 0 0 0 0 0 0 2.4603 -1.5223 -0.8791 C 0 0 0 0 0 0 0 0 0 0 0 0 3.8710 -1.4689 -0.4141 C 0 0 0 0 0 0 0 0 0 0 0 0 4.5204 -0.1288 -0.5038 C 0 0 1 0 0 0 0 0 0 0 0 0 3.6471 1.0301 -0.1772 C 0 0 0 0 0 0 0 0 0 0 0 0 2.1956 0.8320 -0.4219 C 0 0 2 0 0 0 0 0 0 0 0 0 1.3881 1.9186 0.2274 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.0157 1.7876 -0.3811 C 0 0 0 0 0 0 0 0 0 0 0 0 -0.6103 0.5319 0.1686 C 0 0 1 0 0 0 0 0 0 0 0 0 -1.9315 0.2934 -0.4866 C 0 0 1 0 0 0 0 0 0 0 0 0 -2.5981 -0.8801 0.2473 C 0 0 2 0 0 0 0 0 0 0 0 0 -2.5426 -0.6002 1.7316 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.9918 -0.7848 -0.2861 C 0 0 1 0 0 0 0 0 0 0 0 0 -4.9985 -1.6726 0.3311 C 0 0 2 0 0 0 0 0 0 0 0 0 -5.4825 -2.6993 -0.6974 C 0 0 0 0 0 0 0 0 0 0 0 0 -6.2314 -1.0018 0.8609 C 0 0 0 0 0 0 0 0 0 0 0 0 -6.1497 0.4886 0.9228 C 0 0 1 0 0 0 0 0 0 0 0 0 -4.8369 0.8897 1.1431 O 0 0 0 0 0 0 0 0 0 0 0 0 -4.2793 0.7032 -0.1146 C 0 0 1 0 0 0 0 0 0 0 0 0 -2.9330 1.4013 -0.2209 C 0 0 2 0 0 0 0 0 0 0 0 0 -2.8948 2.2759 -1.3177 O 0 0 0 0 0 0 0 0 0 0 0 0 -5.1958 1.1715 -1.0372 O 0 0 0 0 0 0 0 0 0 0 0 0 -6.4439 1.1349 -0.4236 C 0 0 2 0 0 0 0 0 0 0 0 0 -6.9180 2.5562 -0.2551 C 0 0 0 0 0 0 0 0 0 0 0 0 -6.0129 3.2535 0.5341 O 0 0 0 0 0 0 0 0 0 0 0 0 -7.0139 3.2211 -1.5913 C 0 0 0 0 0 0 0 0 0 0 0 0 -8.2721 2.6306 0.4061 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.8338 0.0788 -1.9559 C 0 0 0 0 0 0 0 0 0 0 0 0 3.9366 1.4198 1.2787 C 0 0 0 0 0 0 0 0 0 0 0 0 4.0856 2.2287 -1.0325 C 0 0 0 0 0 0 0 0 0 0 0 0 5.6510 -0.2142 0.3422 O 0 0 0 0 0 0 0 0 0 0 0 0 6.8341 -0.1805 -0.3254 C 0 0 2 0 0 0 0 0 0 0 0 0 7.6146 -1.3199 -0.1542 O 0 0 0 0 0 0 0 0 0 0 0 0 8.8379 -1.2296 -0.7709 C 0 0 0 0 0 0 0 0 0 0 0 0 9.6928 -0.0805 -0.3388 C 0 0 2 0 0 0 0 0 0 0 0 0 8.9303 0.7228 0.6893 C 0 0 1 0 0 0 0 0 0 0 0 0 7.5872 1.0702 0.0773 C 0 0 1 0 0 0 0 0 0 0 0 0 7.7247 1.9743 -0.9693 O 0 0 0 0 0 0 0 0 0 0 0 0 8.6711 -0.1066 1.7819 O 0 0 0 0 0 0 0 0 0 0 0 0 10.0955 0.7209 -1.4061 O 0 0 0 0 0 0 0 0 0 0 0 0 -3.3954 -4.7888 2.7997 H 0 0 0 0 0 0 0 0 0 0 0 0 -2.5585 -6.1596 1.9514 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.5710 -4.8833 2.7888 H 0 0 0 0 0 0 0 0 0 0 0 0 -2.2981 -2.6461 -0.9382 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.1957 -1.9640 -1.5483 H 0 0 0 0 0 0 0 0 0 0 0 0 0.1650 -2.7810 -0.0320 H 0 0 0 0 0 0 0 0 0 0 0 0 1.1193 -0.1364 2.1125 H 0 0 0 0 0 0 0 0 0 0 0 0 1.3539 -1.9206 1.6096 H 0 0 0 0 0 0 0 0 0 0 0 0 2.3438 -1.2700 -1.9530 H 0 0 0 0 0 0 0 0 0 0 0 0 2.0657 -2.5243 -0.7193 H 0 0 0 0 0 0 0 0 0 0 0 0 3.8938 -1.8365 0.6426 H 0 0 0 0 0 0 0 0 0 0 0 0 4.4688 -2.2091 -0.9902 H 0 0 0 0 0 0 0 0 0 0 0 0 4.9538 -0.0519 -1.5441 H 0 0 0 0 0 0 0 0 0 0 0 0 2.0297 0.9440 -1.5346 H 0 0 0 0 0 0 0 0 0 0 0 0 1.8370 2.8907 -0.0220 H 0 0 0 0 0 0 0 0 0 0 0 0 1.2543 1.7972 1.3103 H 0 0 0 0 0 0 0 0 0 0 0 0 0.1174 1.8124 -1.4602 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.6511 2.6403 -0.0942 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.8145 0.7273 1.2628 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.3200 -1.1621 2.2997 H 0 0 0 0 0 0 0 0 0 0 0 0 -2.7007 0.4656 1.9871 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.5699 -0.9837 2.1092 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.9698 -0.9524 -1.3799 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.5914 -2.2929 1.1776 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.3437 -2.2418 -1.2365 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.7014 -3.0101 -1.3865 H 0 0 0 0 0 0 0 0 0 0 0 0 -5.8397 -3.5921 -0.1460 H 0 0 0 0 0 0 0 0 0 0 0 0 -7.1556 -1.2447 0.2583 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.5018 -1.3527 1.8988 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.8652 0.9026 1.6387 H 0 0 0 0 0 0 0 0 0 0 0 0 -2.6901 2.0083 0.6600 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.7125 2.8311 -1.3654 H 0 0 0 0 0 0 0 0 0 0 0 0 -7.1512 0.5271 -1.0118 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.0704 2.9413 1.4786 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.7965 4.2972 -1.4743 H 0 0 0 0 0 0 0 0 0 0 0 0 -8.0352 3.1108 -2.0411 H 0 0 0 0 0 0 0 0 0 0 0 0 -6.2348 2.8129 -2.2841 H 0 0 0 0 0 0 0 0 0 0 0 0 -8.7073 3.6219 0.1477 H 0 0 0 0 0 0 0 0 0 0 0 0 -8.9470 1.8193 0.0611 H 0 0 0 0 0 0 0 0 0 0 0 0 -8.1312 2.6153 1.5007 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.7895 0.2167 -2.3490 H 0 0 0 0 0 0 0 0 0 0 0 0 -2.4285 0.8545 -2.5237 H 0 0 0 0 0 0 0 0 0 0 0 0 -2.1774 -0.8822 -2.3340 H 0 0 0 0 0 0 0 0 0 0 0 0 3.1008 1.2038 1.9425 H 0 0 0 0 0 0 0 0 0 0 0 0 4.1461 2.5126 1.3671 H 0 0 0 0 0 0 0 0 0 0 0 0 4.8261 0.9058 1.6710 H 0 0 0 0 0 0 0 0 0 0 0 0 3.3053 2.5033 -1.7723 H 0 0 0 0 0 0 0 0 0 0 0 0 4.9883 1.9663 -1.6350 H 0 0 0 0 0 0 0 0 0 0 0 0 4.2412 3.1316 -0.4048 H 0 0 0 0 0 0 0 0 0 0 0 0 6.6786 -0.0884 -1.4333 H 0 0 0 0 0 0 0 0 0 0 0 0 9.4273 -2.1532 -0.7357 H 0 0 0 0 0 0 0 0 0 0 0 0 8.6200 -1.0659 -1.8646 H 0 0 0 0 0 0 0 0 0 0 0 0 10.5982 -0.4623 0.1772 H 0 0 0 0 0 0 0 0 0 0 0 0 9.4256 1.6544 0.9577 H 0 0 0 0 0 0 0 0 0 0 0 0 7.0132 1.5866 0.8693 H 0 0 0 0 0 0 0 0 0 0 0 0 8.5897 2.4729 -0.9081 H 0 0 0 0 0 0 0 0 0 0 0 0 9.0608 -1.0092 1.6669 H 0 0 0 0 0 0 0 0 0 0 0 0 9.6817 0.4865 -2.2555 H 0 0 0 0 0 0 0 0 0 0 0 0 1 2 1 0 2 3 2 0 2 4 1 0 4 5 1 0 5 6 1 0 7 6 1 6 7 8 1 0 9 8 1 1 9 10 1 0 10 11 1 0 11 12 1 0 12 13 1 0 13 14 1 0 14 15 1 0 15 16 1 0 16 17 1 0 17 18 1 0 18 19 1 0 19 20 1 1 19 21 1 0 21 22 1 0 22 23 1 0 22 24 1 0 24 25 1 0 25 26 1 0 26 27 1 0 27 28 1 0 28 29 1 0 27 30 1 6 30 31 1 0 31 32 1 0 32 33 1 0 32 34 1 0 32 35 1 0 18 36 1 6 13 37 1 0 13 38 1 0 12 39 1 0 39 40 1 0 40 41 1 0 41 42 1 0 42 43 1 0 43 44 1 0 44 45 1 0 45 46 1 0 44 47 1 0 43 48 1 0 19 5 1 0 27 21 1 0 45 40 1 0 17 7 1 0 28 18 1 0 9 7 1 0 31 25 1 0 14 9 1 0 1 49 1 0 1 50 1 0 1 51 1 0 5 52 1 6 6 53 1 0 6 54 1 0 8 55 1 0 8 56 1 0 10 57 1 0 10 58 1 0 11 59 1 0 11 60 1 0 12 61 1 6 14 62 1 6 15 63 1 0 15 64 1 0 16 65 1 0 16 66 1 0 17 67 1 1 20 68 1 0 20 69 1 0 20 70 1 0 21 71 1 6 22 72 1 1 23 73 1 0 23 74 1 0 23 75 1 0 24 76 1 0 24 77 1 0 25 78 1 1 28 79 1 1 29 80 1 0 31 81 1 6 33 82 1 0 34 83 1 0 34 84 1 0 34 85 1 0 35 86 1 0 35 87 1 0 35 88 1 0 36 89 1 0 36 90 1 0 36 91 1 0 37 92 1 0 37 93 1 0 37 94 1 0 38 95 1 0 38 96 1 0 38 97 1 0 40 98 1 6 42 99 1 0 42100 1 0 43101 1 1 44102 1 1 45103 1 1 46104 1 0 47105 1 0 48106 1 0 M END

Standard InCHIKey	HZIBYJCDCHVSPK-HDBHZJCMSA-N
Standard InCHI	InChI=1S/C37H58O11/c1-17-13-20-28(32(5,6)43)48-37(47-20)27(17)34(8)24(45-18(2)38)14-36-16-35(36)12-11-23(46-29-26(41)25(40)19(39)15-44-29)31(3,4)21(35)9-10-22(36)33(34,7)30(37)42/h17,19-30,39-43H,9-16H2,1-8H3/t17-,19-,20-,21+,22+,23+,24-,25+,26-,27-,28+,29+,30-,33-,34-,35-,36+,37+/m1/s1
SMILES	CC(=O)O[C@@H]1C[C@]23C[C@]43CC[C@@H](C([C@@H]4CC[C@H]2[C@]2([C@@]1(C)[C@H]1[C@H](C)C[C@H]3O[C@]1([C@@H]2O)O[C@@H]3C(O)(C)C)C)(C)C)O[C@@H]1OC[C@H]([C@@H]([C@H]1O)O)O

Calculated Properties

Physi-Chem Properties

Molecular Weight:	678.4	Volume:	674.112 ? Van der Waals volume.
Dense:	1.006	LogP:	0.923 ? The logarithm of the n-octanol/water distribution coefficients.
logD7.4:	1.494 ? The logarithm of the n-octanol/water distribution coefficient at pH=7.4.	LogS:	-2.816 ? The logarithm of aqueous solubility value.
Rotatable Bonds:	5.0	Rigid Bonds:	37.0
TPSA:	164.37 ? Topological Polar Surface Area.	H-Bond Acceptor:	11.0
H-Bond Donor:	5.0	Rings:	8.0
Heavy Atoms:	11.0

MedChem Properties

QED Drug-Likeness Score:	0.219	GASA:	1.0 ? GASA represents the probability of being difficult to synthesize, ranging from 0 to 1.
Synthetic Accessibility Score:	7.537	Fsp³:	0.973
MCE-18:	220.644 ? MCE-18 stands for medicinal chemistry evolution.MCE-18≥45 is considered a suitable value.	Lipinski Rule-of-5:	Accepted
Pfizer Rule:	Rejected	GSK Rule:	Accepted
Golden Triangle Rule:	Accepted	BMS Rule:	0
Chelating Alert:	0	PAINS Alert:	0
Colloidal aggregators:	0.881	Fluc inhibitor:	0.0 ? The fluc inhibitor value is the probability of being fLuc inhibitors, within the range of 0 to 1.
Blue fluorescence:	0.003 ? The blue fluorescence value is the probability of being blue fluorescence, within the range of 0 to 1	Green fluorescence:	0.0 ? The green fluorescence value is the probability of being green fluorescence, within the range of 0 to 1
Reactive compounds:	0.133	Promiscuous compounds:	0.277

ADMET Properties (ADMETlab3.0)

ADMET: Absorption

Caco-2 Permeability:	-5.598	MDCK Permeability:	-5.066
Pgp-inhibitor:	0.79	Pgp-substrate:	0.79
PAMPA:	0.968 ? The experimental data for Peff was logarithmically transformed (logPeff). Molecules with log Peff values below 2.0 were classified as low-permeability (Category 0), while those with log Peff values exceeding 2.5 were classified as high-permeability (Category 1).	Human Intestinal Absorption (HIA):	0.015
20% Bioavailability (F20%):	0.285	30% Bioavailability (F30%):	0.599
50% Bioavailability (F50%):	0.956

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):	0.002	MRP1:	0.529
Plasma Protein Binding (PPB):	56.881%	Volume Distribution (VD):	-0.501
Fu:	38.724% ? The fraction unbound in plasms.	OATP1B1 inhibitor:	1.0
OATP1B3 inhibitor:	0.995	BCRP inhibitor:	0.045
BSEP inhibitor:	0.748

ADMET: Metabolism

CYP1A2-inhibitor:	0.0	CYP1A2-substrate:	0.0
CYP2C19-inhibitor:	0.018	CYP2C19-substrate:	0.0
CYP2C9-inhibitor:	0.0	CYP2C9-substrate:	0.0
CYP2D6-inhibitor:	0.0	CYP2D6-substrate:	0.752
CYP3A4-inhibitor:	0.045	CYP3A4-substrate:	0.862
CYP2B6-substrate:	0.0	CYP2C8-inhibitor:	0.819
HLM stability:	0.328 ? Human liver microsomal (HLM) stability. Category 0: stable+ (HLM > 30 min); Category 1: unstable- (HLM ≤ 30 min). The output value is the probability of human liver microsomal instability, where a value closer to 1 indicates a higher likelihood of instability.

ADMET: Excretion

Clearance (CL):

1.817

Half-life (T1/2):

2.043

ADMET: Toxicity

hERG Blockers:	0.021	hERG Blockers (10um):	0.107
Human Hepatotoxicity (H-HT):	0.33	Drug-induced Liver Injury (DILI):	0.247
AMES Toxicity:	0.942	Rat Oral Acute Toxicity:	0.197
Maximum Recommended Daily Dose:	0.176	Skin Sensitization:	1.0
Carcinogencity:	0.542	Eye Corrosion:	0.0
Eye Irritation:	0.007	Respiratory Toxicity:	0.061
Drug-induced Neurotoxicity:	0.012	Ototoxicity:	0.921
Hematotoxicity:	0.28	Drug-induced Nephrotoxicity:	0.849
Genotoxicity:	0.273	RPMI-8226 Immunitoxicity:	0.214
A549 Cytotoxicity:	0.203	Hek293 Cytotoxicity:	0.369
BCF:	1.22 ? Bioconcentration factors are used for considering secondary poisoning potential and assessing risks to human health via the food chain. The unit is -log10[(mg/L)/(1000*MW)].	IGC50:	3.819 ? 48 hour Tetrahymena pyriformis IGC50. The unit of IGC50 is -log10[(mg/L)/(1000*MW)].
LC50DM:	5.431 ? 48 hour Daphnia magna LC50. The unit of LC50DM is -log10[(mg/L)/(1000*MW)].	LC50FM:	4.621 ? 96 hour fathead minnow LC50. The unit of LC50FM is -log10[(mg/L)/(1000*MW)].

Species Source

Organism ID	Organism Name	Taxonomy Level	Family	SuperKingdom	Isolation Part	Collection Location	Collection Time	Reference
NPO26366	Actaea pachypoda	Species	Ranunculaceae	Eukaryota	roots	n.a.	n.a.	PMID[17253859]
NPO31564	Cimicifuga foetida	n.a.	n.a.	n.a.	n.a.	aerial part	n.a.	PMID[19280146]
NPO15890	Cimicifuga foetida	Species	Ranunculaceae	Eukaryota	Roots	n.a.	n.a.	PMID[20121210]
NPO31564	Cimicifuga foetida	n.a.	n.a.	n.a.	rhizomes	n.a.	n.a.	PMID[25136911]
NPO31564	Cimicifuga foetida	n.a.	n.a.	n.a.	n.a.	n.a.	n.a.	Database[COCONUT]
NPO26366	Actaea pachypoda	Species	Ranunculaceae	Eukaryota	n.a.	n.a.	n.a.	Database[COCONUT]
NPO31564	Cimicifuga foetida	n.a.	n.a.	n.a.	n.a.	n.a.	n.a.	Database[HerDing]
NPO15890	Cimicifuga foetida	Species	Ranunculaceae	Eukaryota	n.a.	n.a.	n.a.	Database[TCMID]
NPO31564	Cimicifuga foetida	n.a.	n.a.	n.a.	n.a.	n.a.	n.a.	Database[TCM_Taiwan]
NPO15890	Cimicifuga foetida	Species	Ranunculaceae	Eukaryota	n.a.	n.a.	n.a.	Database[TM-MC]
NPO15890	Cimicifuga foetida	Species	Ranunculaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]
NPO26366	Actaea pachypoda	Species	Ranunculaceae	Eukaryota	n.a.	n.a.	n.a.	Database[UNPD]

Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
☉ UNPD: Universal Natural Products Database [PMID: 23638153].
☉ StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
☉ TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
☉ TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
☉ TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
☉ TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
☉ HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
☉ MetaboLights: a metabolomics database [PMID: 27010336].
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

NP Quantity Composition/Concentration

Organism ID	Organism Name	Organism Material Preparation	Organism Part	NP Quantity (Standard)	NP Quantity (Minimum)	NP Quantity (Maximum)	Quantity Unit	Reference

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
☉ DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
☉ PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
☉ FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

Biological Activity

Activity Type	# Activity
IC50	5

Activity Type	# Activity
Cell line	2
Non-molecular	3

Molecular-level activity

Target ID	Target Type	Target Name	Target Organism	Activity Type	Activity Relation	Value	Unit	Reference

In vitro activity

Target ID	Target Type	Target Name	Target Organism	Activity Type	Activity Relation	Value	Unit	Reference
NPT83	Cell line	MCF7	Homo sapiens	IC50	>	10000.0	nM	PMID[25136911]
NPT165	Cell line	HeLa	Homo sapiens	IC50	>	10000.0	nM	PMID[25136911]
NPT20529	Non-molecular	NON-PROTEIN TARGET	n.a.	IC50	>	10000.0	nM	PMID[25136911]

In vivo activity

Target ID	Target Type	Target Name	Target Organism	Activity Type	Activity Relation	Value	Unit	Reference

Experimental ADME

Experiment Model	Experiment Tissue	ADME Type	ADME Relation	ADME Value	ADME Unit	Reference

Experimental Toxicity

Quantitative toxicity

Experiment Model	Experiment Organism	Toxicity Type	Toxicity Relation	Toxicity Value	Toxicity Unit	Reference

Common Abbreviations:
LC: Lethal Concentration; LD: Lethal Dose; LT:Lethal Time; NOAEL: No-observed-adverse-effect Level; BMDL: Benchmark Dose Lower Confidence Limit; BMD: Benchmark Dose; BMC:Benchmark Concentration; LOAEL: Lowest Observed Adverse Effect Level; RfD:Reference Dose; RfC:Reference Concentration; MRL: Minimal Risk Level; MEG: Maximum Exposure Guideline; PAC: Protective Action Criteria

Categorical toxicity labels

Hepatotoxicity	Carcinogenicity	Mutagenicity	Cardiotoxicity	Respiratory Toxicity	Eye Irritation	Endocrine Disruption

Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP toxicity records from domain-specific databases. These databases include:
☉ ToxValDB: a curated database that compiles quantitative toxicity values for chemicals from diverse public sources to support toxicological research and risk assessment.
☉ TOXRIC: a comprehensive, free-to-access, online database providing toxicological/feature data. The toxicity labels are retrieved from this database. [PMID: 36400569]

Chemically structural similarity

Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes approximately 50,000 NPs with experimentally-derived bioactivity available in NPASS)

Similarity is measured using the Tanimoto coefficient (Tc) , which compares the binary fingerprints of two molecules. Tc is calculated as the intersection divided by the union of '1' bits in the fingerprints, ranging from 0 to 1, with 1 indicating highest similarity.

● The left chart: Distribution of similarity level between NPC134967 and all remaining natural products in the NPASS database.
● The right table: Most similar natural products (Tc>=0.5 or Top200).

range	Tanimoto Coefficient
0-0.1	22199
0.1-0.2	24620
0.2-0.3	2917
0.3-0.4	78
0.4-0.5	20
0.5-0.6	18
0.6-0.7	3
0.7-0.8	0
0.8-0.85	0
0.85-0.9	0
0.9-0.95	0
0.95-1	0

Similarity Score	Similarity Level	Natural Product ID
0.7692	Intermediate Similarity	NPC470028
0.75	Intermediate Similarity	NPC233649
0.7143	Intermediate Similarity	NPC156377
0.6824	Remote Similarity	NPC470029
0.6364	Remote Similarity	NPC476839
0.6364	Remote Similarity	NPC476838
0.5978	Remote Similarity	NPC55384
0.5909	Remote Similarity	NPC92299
0.5778	Remote Similarity	NPC476512
0.5638	Remote Similarity	NPC310138
0.5579	Remote Similarity	NPC97260
0.5579	Remote Similarity	NPC476837
0.5532	Remote Similarity	NPC139181
0.5532	Remote Similarity	NPC114700
0.5532	Remote Similarity	NPC478622
0.5376	Remote Similarity	NPC472079
0.5333	Remote Similarity	NPC476513
0.5319	Remote Similarity	NPC472080
0.5275	Remote Similarity	NPC227879
0.5275	Remote Similarity	NPC208333
0.5253	Remote Similarity	NPC478614
0.5161	Remote Similarity	NPC476510
0.5158	Remote Similarity	NPC170814
0.5104	Remote Similarity	NPC472081

Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

● The left chart: Distribution of similarity level between NPC134967 and all drugs/candidates.
● The right table: Most similar clinical/approved drugs (Tc>=0.5 or Top200).

range	Tanimoto Coefficient
0-0.1	7294
0.1-0.2	1823
0.2-0.3	33
0.3-0.4	0
0.4-0.5	0
0.5-0.6	0
0.6-0.7	0
0.7-0.8	0
0.8-0.85	0
0.85-0.9	0
0.9-0.95	0
0.95-1	0

Similarity Score	Similarity Level	Drug ID	Developmental Stage
		NPD

Bioactivity similarity

Similar Natural Products in NPASS

Similarity level is defined by Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
☉ A: chemistry similarity;
☉ B: biological targets similarity;
☉ C: networks similarity;
☉ D: cell-based bioactivity similarity;
☉ E: similarity based on clinical data.
Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity

B: biological targets similarity

C: networks similarity

D: cell-based bioactivity similarity

E: similarity based on clinical data