Natural Product: NPC99088

Natural Product ID:  NPC99088
Common Name:   Lycopene
IUPAC Name:   (6E,8E,10E,12E,14E,16E,18E,20E,22E,24E,26E)-2,6,10,14,19,23,27,31-octamethyldotriaconta-2,6,8,10,12,14,16,18,20,22,24,26,30-tridecaene
Synonyms:   E160d
Molecular Formula:   C40H56
Standard InCHIKey:  OAIJSZIZWZSQBC-GYZMGTAESA-N
Standard InCHI:  InChI=1S/C40H56/c1-33(2)19-13-23-37(7)27-17-31-39(9)29-15-25-35(5)21-11-12-22-36(6)26-16-30-40(10)32-18-28-38(8)24-14-20-34(3)4/h11-12,15-22,25-32H,13-14,23-24H2,1-10H3/b12-11+,25-15+,26-16+,31-17+,32-18+,35-21+,36-22+,37-27+,38-28+,39-29+,40-30+
Canonical SMILES:  C/C(=CC=CC=C(C=CC=C(C=CC=C(CCC=C(C)C)/C)/C)/C)/C=C/C=C(/C=C/C=C(/CCC=C(C)C)C)C
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO24987 Simira eliezeriana Species Rubiaceae Eukaryota UNPD*
NPO17786 Marrubium anisodon Species Lamiaceae Eukaryota UNPD*
NPO11538 Salvia syriaca Species Lamiaceae Eukaryota UNPD*
NPO9658 Reidispongia coerulea Species Phymatellidae Eukaryota UNPD*
NPO17094 Sinularia depressa Species Alcyoniidae Eukaryota UNPD*
NPO11797 Pavetta owariensis Species Rubiaceae Eukaryota UNPD*
NPO4181 Pseudoalteromonas luteoviolacea Species Pseudoalteromonadaceae Bacteria UNPD*
NPO14395 Lysimachia mauritiana Species Primulaceae Eukaryota UNPD*
NPO25090 Araujia sericifera Species Apocynaceae Eukaryota UNPD*
NPO16493 Nasutitermes ephratae Species Termitoidae Eukaryota UNPD*
NPO24068 Prunus laurocerasus Species Rosaceae Eukaryota UNPD*
NPO25443 Citrus reticulata Species Rutaceae Eukaryota UNPD*
NPO6881 Caragana aurantiaca Species Fabaceae Eukaryota UNPD*
NPO16089 Dumortiera hirsuta Species Dumortieraceae Eukaryota UNPD*
NPO25415 Pseudopterogorgia kallos Species Gorgoniidae Eukaryota UNPD*
NPO22194 Kaempferia pulchra Species Zingiberaceae Eukaryota UNPD*
NPO24218 Fusarium gibbosum Species Nectriaceae Eukaryota UNPD*
NPO25471 Chromolaena pulchella Species Asteraceae Eukaryota UNPD*
NPO15552 Anacystis montana NA NA NA UNPD*
NPO1771 Rose rugosae flos NA NA NA TCMSP*
NPO16857 Hypericum laricifolium Species Hypericaceae Eukaryota UNPD*
NPO23963 Odixia angusta Species Asteraceae Eukaryota UNPD*
NPO4325 Blastochloris viridis Species Hyphomicrobiaceae Bacteria UNPD*
NPO29618 Citri grandis exocarpium NA NA NA TCMSP*
NPO13167 Scutellaria amoena Species Lamiaceae Eukaryota UNPD*
NPO17702 Astragalus sempervirens Species Fabaceae Eukaryota UNPD*
NPO17633 Viguiera incana Species Asteraceae Eukaryota UNPD*
NPO25144 Artemisia monogyna Species Asteraceae Eukaryota UNPD*
NPO22736 Drosera peltata Species Droseraceae Eukaryota UNPD*
NPO26327 Chaenomeles sinensis Species Rosaceae Eukaryota UNPD*
NPO947 Rauvolfia vomitoria Species Apocynaceae Eukaryota UNPD*
NPO17400 Peltostigma guatemalense Species Rutaceae Eukaryota UNPD*
NPO26042 Agnorhiza bolanderi Species Asteraceae Eukaryota UNPD*
NPO17472 Drechslera avenae Species Pleosporaceae Eukaryota UNPD*
NPO13847 Streptomyces avermitilis Species Streptomycetaceae Bacteria UNPD*
NPO15659 Zanthoxylum tetraspermum Species Rutaceae Eukaryota UNPD*
NPO25187 Cladonia evansii Species Cladoniaceae Eukaryota UNPD*
NPO25234 Epaltes gariepina Species Asteraceae Eukaryota UNPD*
NPO6098 Salvia officinalis Species Lamiaceae Eukaryota UNPD*
NPO25390 Pterocarpus grandiflorus Species Fabaceae Eukaryota UNPD*
NPO9516 Gnetum latifolium Species Gnetaceae Eukaryota UNPD*
NPO25359 Isodon kameba Species Lamiaceae Eukaryota UNPD*
NPO23691 Pyrosoma giganteum Species Pyrosomatidae Eukaryota UNPD*
NPO29653 Hippophae fructus Species Elaeagnaceae Eukaryota TCMSP*
NPO15063 Leathesia nana Species Chordariaceae Eukaryota UNPD*
NPO24675 Quercus aegilops Species Fagaceae Eukaryota UNPD*
NPO10496 Drimia maritima Species Hyacinthaceae Eukaryota UNPD*
NPO15227 Helipterum roseum Species Asteraceae Eukaryota UNPD*
NPO4977.8 Streptomyces globisporus 1912-hp7 Subspecies Streptomycetaceae Bacteria StreptomeDB*
NPO13407 Goniothalamus malayanus Species Annonaceae Eukaryota UNPD*
NPO21724 Sabina sargentii NA NA NA UNPD*
NPO4977.5 Streptomyces globisporus 1912 4lcp Subspecies Streptomycetaceae Bacteria StreptomeDB*
NPO18022 Naucleopsis ternstroemiiflora Species Moraceae Eukaryota UNPD*
NPO14859 Bishovia boliviensis NA NA NA UNPD*
NPO6232 Streptomyces griseus Species Streptomycetaceae Bacteria StreptomeDB*
NPO1794 Ilex affinis Species Aquifoliaceae Eukaryota UNPD*
NPO16611 Alstonia spathulata Species Apocynaceae Eukaryota UNPD*
NPO4977.4 Streptomyces globisporus 1912 4crt Subspecies Streptomycetaceae Bacteria StreptomeDB*
NPO17024 Vitis vinifera Species Vitaceae Eukaryota UNPD*
NPO18352 Anaxagorea clavata Species Annonaceae Eukaryota UNPD*
NPO1797 Homo sapiens Species Hominidae Eukaryota blood PMID[12792623]
NPO17169 Adiantum lunulatum Species Pteridaceae Eukaryota UNPD*
NPO24640 Echinops amplexicaulis Species Asteraceae Eukaryota UNPD*
NPO8970 Citrullus lanatus Species Cucurbitaceae Eukaryota TM-MC*
NPO25623 Taxodium mucronatum Species Cupressaceae Eukaryota UNPD*
NPO23453 Pheidole pallidula Species Formicidae Eukaryota UNPD*
NPO15095 Hippophae rhamnoides Species Elaeagnaceae Eukaryota TM-MC*
NPO10989 Annona cornifolia Species Annonaceae Eukaryota UNPD*
NPO20823 Stenostomum lucidum Species Rubiaceae Eukaryota UNPD*
NPO25291 Lactarius scrobiculatus Species Russulaceae Eukaryota UNPD*
NPO7562 Premna odorata Species Lamiaceae Eukaryota UNPD*
NPO20833 Beyeria brevifolia Species Euphorbiaceae Eukaryota UNPD*
NPO24511 Dipterocarpus alatus Species Dipterocarpaceae Eukaryota UNPD*
NPO3964 Calostephane divaricata Species Asteraceae Eukaryota UNPD*
NPO24475 Aceriphyllum rossii NA NA NA UNPD*
NPO19870 Momordica cochinchinensis Species Cucurbitaceae Eukaryota TM-MC*
NPO7552 Alligator mississippiensis Species Alligatoridae Eukaryota UNPD*
NPO10417 Ipomoea digitata Species Convolvulaceae Eukaryota UNPD*
NPO25699 Vitex madiensis Species Lamiaceae Eukaryota UNPD*
NPO23567 Coccus fagi Species Coccidae Eukaryota UNPD*
NPO24291 Rhizobium phaseoli Species Rhizobiaceae Bacteria UNPD*
NPO13642 Pastinaca sativa Species Apiaceae Eukaryota UNPD*
NPO2507 Rumex maritimus Species Polygonaceae Eukaryota UNPD*
NPO15803 Artemisia assoana Species Asteraceae Eukaryota UNPD*
NPO24383 Ficus formosana Species Moraceae Eukaryota UNPD*
NPO12703 Eucalyptus melliodora Species Myrtaceae Eukaryota UNPD*
NPO6714 Securidaca inappendiculata Species Polygalaceae Eukaryota UNPD*
NPO8506 Cotyledon secunda Species Crassulaceae Eukaryota UNPD*
NPO11641 Solanum laxum Species Solanaceae Eukaryota UNPD*
NPO24744 Chloranthus tianmushanensis Species Chloranthaceae Eukaryota UNPD*
NPO26128 Clonostachys rosea Species Bionectriaceae Eukaryota UNPD*
NPO25671 Gardenia fosbergii Species Rubiaceae Eukaryota UNPD*
NPO7445 Pteris prolifera Species Pteridaceae Eukaryota UNPD*
NPO15117 Chromolaena odorata Species Asteraceae Eukaryota UNPD*
NPO3301 Lycopodium deuterodensum Species Lycopodiaceae Eukaryota UNPD*
NPO24830 Prosopis glandulosa Species Fabaceae Eukaryota UNPD*
NPO10918 Tonduzia longifolia Species Apocynaceae Eukaryota UNPD*
NPO17242 Laurencia spectabilis Species Rhodomelaceae Eukaryota UNPD*
NPO16731 Phoebe pittieri Species Lauraceae Eukaryota UNPD*
NPO25529 Bursaria spinosa Species Pittosporaceae Eukaryota UNPD*
NPO15467 Hedysarum connatum Species Fabaceae Eukaryota UNPD*
NPO6160 Vaccinium oxycoccos Species Ericaceae Eukaryota UNPD*
NPO25045 Senecio squalidus Species Asteraceae Eukaryota UNPD*
NPO24556 Bassia butyracea Species Abylidae Eukaryota UNPD*
NPO28665 Sesbania punicea Species Fabaceae Eukaryota UNPD*
NPO17942 Wikstroemia retusa Species Thymelaeaceae Eukaryota UNPD*
NPO16369 Lepisorus ussuriensis Species Polypodiaceae Eukaryota UNPD*
NPO23805 Arnica nevadensis Species Asteraceae Eukaryota UNPD*
NPO17544 Acacia adunca Species Fabaceae Eukaryota UNPD*
NPO17865 Amathia pinnata Species Vesiculariidae Eukaryota UNPD*
NPO25258 Seriphidium cinum Species Asteraceae Eukaryota UNPD*
NPO24599 Streptomyces althioticus Species Streptomycetaceae Bacteria UNPD*
NPO25326 Dendrosenecio kilimanjari Species Asteraceae Eukaryota UNPD*
NPO14685 Swertia franchetiana Species Gentianaceae Eukaryota UNPD*
NPO11917 Asterospicularia laurae Species Xeniidae Eukaryota UNPD*
NPO24929 Aria pallescens Species Rosaceae Eukaryota UNPD*
NPO15382 Cygnus olor Species Anatidae Eukaryota UNPD*

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT35 Others n.a. Activity = 36 % 16933864
NPT483 Individual Protein Prelamin-A/C Homo sapiens Potency = 11220.2 nM PubChem BioAssay data set
NPT53 Individual Protein 4'-phosphopantetheinyl transferase ffp Bacillus subtilis Potency = 31622.8 nM PubChem BioAssay data set
NPT5 Individual Protein Histone-lysine N-methyltransferase, H3 lysine-9 specific 3 Homo sapiens Potency 19952.6 nM PubChem BioAssay data set
NPT198 Individual Protein Vitamin D receptor Homo sapiens Potency 89125.1 nM PubChem BioAssay data set
NPT6 Organism Plasmodium falciparum Plasmodium falciparum Potency 6012 nM PubChem BioAssay data set
NPT199 Individual Protein DNA polymerase kappa Homo sapiens Potency 23778.1 nM PubChem BioAssay data set
NPT6 Organism Plasmodium falciparum Plasmodium falciparum Potency 10691 nM PubChem BioAssay data set
NPT444 Individual Protein Ubiquitin carboxyl-terminal hydrolase 1 Homo sapiens Potency 56234.1 nM PubChem BioAssay data set
NPT10 Individual Protein Geminin Homo sapiens Potency 33498.3 nM PubChem BioAssay data set
NPT10 Individual Protein Geminin Homo sapiens Potency 18837.5 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency 23715 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency 33498.3 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency 6682.4 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency 7562.4 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency 105.9 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency 33491.5 nM PubChem BioAssay data set
NPT153 Individual Protein Androgen Receptor Homo sapiens Potency 15089 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency 29849.3 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency 10000 nM PubChem BioAssay data set
NPT2 Others Unspecified Potency 2391.4 nM PubChem BioAssay data set

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC99088 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC173592
1.0 High Similarity NPC305759
0.9032 High Similarity NPC60288
0.871 High Similarity NPC138113
0.871 High Similarity NPC115959
0.871 High Similarity NPC123965
0.8387 Intermediate Similarity NPC288991
0.8387 Intermediate Similarity NPC64176
0.8387 Intermediate Similarity NPC138325
0.8387 Intermediate Similarity NPC262789
0.8182 Intermediate Similarity NPC471327
0.8125 Intermediate Similarity NPC34671
0.7838 Intermediate Similarity NPC266298
0.7778 Intermediate Similarity NPC282119
0.7647 Intermediate Similarity NPC151719
0.7647 Intermediate Similarity NPC66577
0.7647 Intermediate Similarity NPC206088
0.7368 Intermediate Similarity NPC45727
0.7368 Intermediate Similarity NPC48638
0.7297 Intermediate Similarity NPC92224
0.7143 Intermediate Similarity NPC3649
0.7143 Intermediate Similarity NPC100879
0.7143 Intermediate Similarity NPC138935
0.7027 Intermediate Similarity NPC182392
0.7 Intermediate Similarity NPC183670
0.6944 Remote Similarity NPC213749
0.6923 Remote Similarity NPC239039
0.6889 Remote Similarity NPC17810
0.6829 Remote Similarity NPC144023
0.6829 Remote Similarity NPC120926
0.6829 Remote Similarity NPC218918
0.6765 Remote Similarity NPC179103
0.6765 Remote Similarity NPC76765
0.6667 Remote Similarity NPC177470
0.6667 Remote Similarity NPC213538
0.6667 Remote Similarity NPC196831
0.6667 Remote Similarity NPC256766
0.65 Remote Similarity NPC180840
0.6486 Remote Similarity NPC13217
0.6452 Remote Similarity NPC96619
0.6429 Remote Similarity NPC269823
0.6364 Remote Similarity NPC88325
0.6316 Remote Similarity NPC62779
0.625 Remote Similarity NPC185839
0.625 Remote Similarity NPC190810
0.625 Remote Similarity NPC34764
0.625 Remote Similarity NPC76145
0.625 Remote Similarity NPC201753
0.6176 Remote Similarity NPC287191
0.6176 Remote Similarity NPC31891
0.6176 Remote Similarity NPC266539
0.6176 Remote Similarity NPC266144
0.6136 Remote Similarity NPC116934
0.6129 Remote Similarity NPC178306
0.6122 Remote Similarity NPC208638
0.6098 Remote Similarity NPC297643
0.6098 Remote Similarity NPC139717
0.6098 Remote Similarity NPC229262
0.6087 Remote Similarity NPC323445
0.6047 Remote Similarity NPC469969
0.6 Remote Similarity NPC38497
0.6 Remote Similarity NPC10183
0.5957 Remote Similarity NPC124851
0.5952 Remote Similarity NPC29091
0.5952 Remote Similarity NPC182840
0.5952 Remote Similarity NPC255042
0.5952 Remote Similarity NPC103213
0.5909 Remote Similarity NPC209279
0.5909 Remote Similarity NPC194586
0.5909 Remote Similarity NPC88079
0.5909 Remote Similarity NPC108494
0.5909 Remote Similarity NPC51758
0.5909 Remote Similarity NPC180871
0.5909 Remote Similarity NPC68889
0.5909 Remote Similarity NPC67761
0.5909 Remote Similarity NPC208936
0.5909 Remote Similarity NPC206906
0.5882 Remote Similarity NPC38513
0.587 Remote Similarity NPC160628
0.587 Remote Similarity NPC276825
0.587 Remote Similarity NPC49088
0.587 Remote Similarity NPC140501
0.5814 Remote Similarity NPC323278
0.5814 Remote Similarity NPC12319
0.5814 Remote Similarity NPC18205
0.5814 Remote Similarity NPC56917
0.5806 Remote Similarity NPC225855
0.5778 Remote Similarity NPC216921
0.5769 Remote Similarity NPC470893
0.5745 Remote Similarity NPC308331
0.5745 Remote Similarity NPC159420
0.5745 Remote Similarity NPC180575
0.5714 Remote Similarity NPC34873
0.5714 Remote Similarity NPC92863
0.5714 Remote Similarity NPC40434
0.5714 Remote Similarity NPC474460
0.5714 Remote Similarity NPC155880
0.5686 Remote Similarity NPC476679
0.5682 Remote Similarity NPC188596
0.5652 Remote Similarity NPC477686
0.5652 Remote Similarity NPC473533
0.5625 Remote Similarity NPC318549

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC99088 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.6889 Remote Similarity NPD8262 Approved
0.675 Remote Similarity NPD5783 Phase 3
0.625 Remote Similarity NPD319 Phase 1
0.617 Remote Similarity NPD4220 Pre-registration
0.6061 Remote Similarity NPD8834 Discontinued
0.587 Remote Similarity NPD4265 Approved
0.5814 Remote Similarity NPD1153 Clinical (unspecified phase)

Structure

External Identifiers

PubChem CID   446925
ChEMBL   CHEMBL501174
ZINC  

Physicochemical Properties

Molecular Weight:  536.44
ALogP:  11.5726
MLogP:  5.86
XLogP:  14.586
# Rotatable Bonds:  26
Polar Surface Area:  0
# H-Bond Aceptor:  0
# H-Bond Donor:  0
# Rings:  0
# Heavy Atoms:  40

Download Data

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General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs