Natural Product: NPC20907

Natural Product ID:  NPC20907
Common Name:   Gericudranin E
IUPAC Name:   (2R,3R)-3,5,7-trihydroxy-2-(4-hydroxyphenyl)-6-[(4-hydroxyphenyl)methyl]-2,3-dihydrochromen-4-one
Synonyms:   Gericudranin E
Molecular Formula:   C22H18O7
Standard InCHIKey:  SFDDCVYUBBUSMV-FCHUYYIVSA-N
Standard InCHI:  InChI=1S/C22H18O7/c23-13-5-1-11(2-6-13)9-15-16(25)10-17-18(19(15)26)20(27)21(28)22(29-17)12-3-7-14(24)8-4-12/h1-8,10,21-26,28H,9H2/t21-,22+/m0/s1
Canonical SMILES:  Oc1ccc(cc1)Cc1c(O)cc2c(c1O)C(=O)[C@@H]([C@H](O2)c1ccc(cc1)O)O
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO30804 Cudrania tricuspidata Species Moraceae Eukaryota fruits PMID[19113968]

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT2 Others Unspecified ED50 = 2.9 ug/ml 8254344
NPT390 Cell Line LOX IMVI Homo sapiens ED50 = 12.5 ug/ml 20934335
NPT371 Cell Line UO-31 Homo sapiens ED50 = 7.6 ug/ml 24878195
NPT386 Cell Line KM12 Homo sapiens ED50 = 11.9 ug/ml 25016370
NPT113 Cell Line RAW264.7 Mus musculus IC50 = 41800 nM 15921418
NPT5528 Cell Line MOLT-4F Homo sapiens ED50 = 10.7 ug/ml 25646964

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC20907 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC244250
0.9733 High Similarity NPC123544
0.973 High Similarity NPC268193
0.9728 High Similarity NPC254412
0.9728 High Similarity NPC262038
0.9728 High Similarity NPC278476
0.9728 High Similarity NPC262039
0.9728 High Similarity NPC319910
0.9664 High Similarity NPC111341
0.9664 High Similarity NPC259710
0.9664 High Similarity NPC304745
0.9664 High Similarity NPC304207
0.9664 High Similarity NPC217706
0.9664 High Similarity NPC48579
0.9664 High Similarity NPC207809
0.9662 High Similarity NPC35567
0.9662 High Similarity NPC138288
0.9662 High Similarity NPC216035
0.9662 High Similarity NPC217149
0.9662 High Similarity NPC243171
0.9662 High Similarity NPC171651
0.966 High Similarity NPC105136
0.96 High Similarity NPC208152
0.96 High Similarity NPC78492
0.9597 High Similarity NPC293286
0.9597 High Similarity NPC248793
0.9597 High Similarity NPC180301
0.9595 High Similarity NPC289774
0.9595 High Similarity NPC328740
0.9595 High Similarity NPC209846
0.9595 High Similarity NPC477897
0.953 High Similarity NPC56232
0.953 High Similarity NPC10807
0.953 High Similarity NPC244583
0.953 High Similarity NPC475790
0.953 High Similarity NPC150123
0.953 High Similarity NPC161881
0.9481 High Similarity NPC63438
0.947 High Similarity NPC20530
0.947 High Similarity NPC10754
0.947 High Similarity NPC215917
0.9467 High Similarity NPC311579
0.9467 High Similarity NPC326592
0.9467 High Similarity NPC472583
0.9467 High Similarity NPC112701
0.9467 High Similarity NPC7989
0.9467 High Similarity NPC223701
0.9467 High Similarity NPC236756
0.9467 High Similarity NPC109594
0.9463 High Similarity NPC471677
0.9463 High Similarity NPC474021
0.9463 High Similarity NPC474023
0.9463 High Similarity NPC263384
0.9463 High Similarity NPC471676
0.9463 High Similarity NPC472422
0.9463 High Similarity NPC244577
0.9463 High Similarity NPC472420
0.9456 High Similarity NPC176869
0.9456 High Similarity NPC3779
0.9456 High Similarity NPC122828
0.9456 High Similarity NPC476182
0.9456 High Similarity NPC44721
0.9456 High Similarity NPC40086
0.9456 High Similarity NPC211466
0.9452 High Similarity NPC62290
0.9452 High Similarity NPC279417
0.9452 High Similarity NPC326506
0.9452 High Similarity NPC470135
0.9452 High Similarity NPC208176
0.9452 High Similarity NPC470136
0.9452 High Similarity NPC142731
0.9452 High Similarity NPC306607
0.9452 High Similarity NPC39045
0.9452 High Similarity NPC4152
0.9452 High Similarity NPC49130
0.9404 High Similarity NPC476169
0.9404 High Similarity NPC477958
0.94 High Similarity NPC210597
0.9396 High Similarity NPC124478
0.9396 High Similarity NPC177308
0.9392 High Similarity NPC218569
0.9388 High Similarity NPC470134
0.9388 High Similarity NPC470132
0.9388 High Similarity NPC148011
0.9388 High Similarity NPC472629
0.9388 High Similarity NPC1940
0.9388 High Similarity NPC473078
0.9388 High Similarity NPC470133
0.9388 High Similarity NPC470131
0.9388 High Similarity NPC109183
0.9351 High Similarity NPC97812
0.9351 High Similarity NPC289771
0.9351 High Similarity NPC142252
0.9346 High Similarity NPC22192
0.9342 High Similarity NPC471787
0.9338 High Similarity NPC88983
0.9338 High Similarity NPC469405
0.9338 High Similarity NPC100134
0.9338 High Similarity NPC209760
0.9333 High Similarity NPC472636
0.9329 High Similarity NPC89442
0.9329 High Similarity NPC472628
0.9324 High Similarity NPC472627
0.9324 High Similarity NPC21835
0.9324 High Similarity NPC472918
0.932 High Similarity NPC87486
0.932 High Similarity NPC470890
0.932 High Similarity NPC124780
0.9299 High Similarity NPC260266
0.929 High Similarity NPC259834
0.929 High Similarity NPC131745
0.929 High Similarity NPC476247
0.9286 High Similarity NPC282009
0.9286 High Similarity NPC287328
0.9286 High Similarity NPC306978
0.9276 High Similarity NPC471116
0.9276 High Similarity NPC470681
0.9272 High Similarity NPC473996
0.9267 High Similarity NPC61258
0.9262 High Similarity NPC296869
0.9262 High Similarity NPC10097
0.9262 High Similarity NPC122894
0.9257 High Similarity NPC228779
0.9257 High Similarity NPC229190
0.9231 High Similarity NPC278419
0.9231 High Similarity NPC472625
0.9231 High Similarity NPC66087
0.9231 High Similarity NPC179198
0.9231 High Similarity NPC183672
0.9226 High Similarity NPC471499
0.9221 High Similarity NPC53545
0.9221 High Similarity NPC295090
0.9221 High Similarity NPC117418
0.9216 High Similarity NPC146636
0.9211 High Similarity NPC203080
0.9205 High Similarity NPC316960
0.9205 High Similarity NPC472580
0.9205 High Similarity NPC148945
0.9205 High Similarity NPC474772
0.9205 High Similarity NPC204561
0.9205 High Similarity NPC317715
0.9205 High Similarity NPC471229
0.9205 High Similarity NPC472423
0.9205 High Similarity NPC309512
0.9205 High Similarity NPC78835
0.9205 High Similarity NPC474744
0.9205 High Similarity NPC178484
0.9205 High Similarity NPC471675
0.92 High Similarity NPC3642
0.92 High Similarity NPC5173
0.92 High Similarity NPC139966
0.92 High Similarity NPC470461
0.92 High Similarity NPC307052
0.92 High Similarity NPC277032
0.9195 High Similarity NPC470670
0.9195 High Similarity NPC91902
0.9195 High Similarity NPC85773
0.9195 High Similarity NPC473133
0.9195 High Similarity NPC296998
0.9195 High Similarity NPC47388
0.9195 High Similarity NPC473077
0.9189 High Similarity NPC273538
0.9189 High Similarity NPC216538
0.9189 High Similarity NPC224714
0.9184 High Similarity NPC32739
0.9184 High Similarity NPC265040
0.9184 High Similarity NPC227579
0.9184 High Similarity NPC64915
0.9184 High Similarity NPC223500
0.9184 High Similarity NPC328164
0.9184 High Similarity NPC220998
0.9184 High Similarity NPC10937
0.9184 High Similarity NPC66515
0.9184 High Similarity NPC296917
0.9184 High Similarity NPC324436
0.9184 High Similarity NPC40833
0.9184 High Similarity NPC306829
0.9184 High Similarity NPC324134
0.9184 High Similarity NPC76372
0.9184 High Similarity NPC182852
0.9184 High Similarity NPC161506
0.9184 High Similarity NPC107572
0.9184 High Similarity NPC37496
0.9184 High Similarity NPC78
0.9184 High Similarity NPC166934
0.9184 High Similarity NPC166482
0.9184 High Similarity NPC194432
0.9184 High Similarity NPC148757
0.9184 High Similarity NPC125855
0.9184 High Similarity NPC76338
0.9184 High Similarity NPC177354
0.9184 High Similarity NPC1089
0.9184 High Similarity NPC228504
0.9184 High Similarity NPC167624
0.9182 High Similarity NPC279209
0.9182 High Similarity NPC102277
0.9172 High Similarity NPC125039
0.9172 High Similarity NPC58223
0.9172 High Similarity NPC7154
0.9172 High Similarity NPC7688

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC20907 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.9396 High Similarity NPD4380 Phase 2
0.9189 High Similarity NPD4378 Clinical (unspecified phase)
0.9172 High Similarity NPD6168 Clinical (unspecified phase)
0.9172 High Similarity NPD6166 Phase 2
0.9172 High Similarity NPD6167 Clinical (unspecified phase)
0.9156 High Similarity NPD7075 Discontinued
0.9085 High Similarity NPD7096 Clinical (unspecified phase)
0.9085 High Similarity NPD2393 Clinical (unspecified phase)
0.9032 High Similarity NPD4381 Clinical (unspecified phase)
0.9026 High Similarity NPD8443 Clinical (unspecified phase)
0.9 High Similarity NPD7804 Clinical (unspecified phase)
0.8973 High Similarity NPD1552 Clinical (unspecified phase)
0.8973 High Similarity NPD1550 Clinical (unspecified phase)
0.8912 High Similarity NPD1549 Phase 2
0.8896 High Similarity NPD1934 Approved
0.8896 High Similarity NPD6801 Discontinued
0.8831 High Similarity NPD7411 Suspended
0.8808 High Similarity NPD7410 Clinical (unspecified phase)
0.8627 High Similarity NPD1512 Approved
0.8625 High Similarity NPD6959 Discontinued
0.8618 High Similarity NPD6799 Approved
0.8608 High Similarity NPD4868 Clinical (unspecified phase)
0.8581 High Similarity NPD1510 Phase 2
0.8571 High Similarity NPD5403 Approved
0.8545 High Similarity NPD6797 Phase 2
0.8523 High Similarity NPD2796 Approved
0.8497 Intermediate Similarity NPD1511 Approved
0.8494 Intermediate Similarity NPD7251 Discontinued
0.8491 Intermediate Similarity NPD3882 Suspended
0.8485 Intermediate Similarity NPD7074 Phase 3
0.8481 Intermediate Similarity NPD2801 Approved
0.8466 Intermediate Similarity NPD7852 Clinical (unspecified phase)
0.8443 Intermediate Similarity NPD7808 Phase 3
0.8443 Intermediate Similarity NPD4338 Clinical (unspecified phase)
0.8442 Intermediate Similarity NPD5401 Approved
0.8434 Intermediate Similarity NPD7993 Clinical (unspecified phase)
0.8428 Intermediate Similarity NPD3817 Phase 2
0.8428 Intermediate Similarity NPD5402 Approved
0.8424 Intermediate Similarity NPD7054 Approved
0.8408 Intermediate Similarity NPD6599 Discontinued
0.8383 Intermediate Similarity NPD6559 Discontinued
0.8375 Intermediate Similarity NPD7768 Phase 2
0.8373 Intermediate Similarity NPD7472 Approved
0.8365 Intermediate Similarity NPD7819 Suspended
0.8364 Intermediate Similarity NPD3818 Discontinued
0.8333 Intermediate Similarity NPD5494 Approved
0.8313 Intermediate Similarity NPD5844 Phase 1
0.8311 Intermediate Similarity NPD1240 Approved
0.8235 Intermediate Similarity NPD7421 Clinical (unspecified phase)
0.821 Intermediate Similarity NPD3749 Approved
0.82 Intermediate Similarity NPD1607 Approved
0.8121 Intermediate Similarity NPD6232 Discontinued
0.8084 Intermediate Similarity NPD7473 Discontinued
0.8079 Intermediate Similarity NPD8090 Clinical (unspecified phase)
0.8065 Intermediate Similarity NPD3750 Approved
0.8054 Intermediate Similarity NPD4907 Clinical (unspecified phase)
0.8 Intermediate Similarity NPD2800 Approved
0.7955 Intermediate Similarity NPD7879 Clinical (unspecified phase)
0.7949 Intermediate Similarity NPD4628 Phase 3
0.7929 Intermediate Similarity NPD3751 Discontinued
0.7922 Intermediate Similarity NPD1551 Phase 2
0.7919 Intermediate Similarity NPD4908 Phase 1
0.7904 Intermediate Similarity NPD3787 Discontinued
0.7861 Intermediate Similarity NPD8312 Approved
0.7861 Intermediate Similarity NPD8313 Approved
0.7829 Intermediate Similarity NPD1613 Approved
0.7829 Intermediate Similarity NPD1612 Clinical (unspecified phase)
0.7815 Intermediate Similarity NPD6798 Discontinued
0.7815 Intermediate Similarity NPD6859 Clinical (unspecified phase)
0.7806 Intermediate Similarity NPD2935 Discontinued
0.7805 Intermediate Similarity NPD8455 Phase 2
0.7803 Intermediate Similarity NPD4419 Clinical (unspecified phase)
0.7765 Intermediate Similarity NPD4360 Phase 2
0.7765 Intermediate Similarity NPD4363 Phase 3
0.7764 Intermediate Similarity NPD920 Approved
0.775 Intermediate Similarity NPD2534 Approved
0.775 Intermediate Similarity NPD2532 Approved
0.775 Intermediate Similarity NPD7004 Clinical (unspecified phase)
0.775 Intermediate Similarity NPD642 Clinical (unspecified phase)
0.775 Intermediate Similarity NPD2533 Approved
0.7742 Intermediate Similarity NPD3748 Approved
0.7738 Intermediate Similarity NPD1247 Approved
0.7736 Intermediate Similarity NPD643 Clinical (unspecified phase)
0.7727 Intermediate Similarity NPD6651 Approved
0.7725 Intermediate Similarity NPD919 Approved
0.7707 Intermediate Similarity NPD970 Clinical (unspecified phase)
0.7697 Intermediate Similarity NPD1465 Phase 2
0.7697 Intermediate Similarity NPD2313 Discontinued
0.7688 Intermediate Similarity NPD7390 Discontinued
0.7688 Intermediate Similarity NPD5953 Discontinued
0.7687 Intermediate Similarity NPD1547 Clinical (unspecified phase)
0.7674 Intermediate Similarity NPD7286 Phase 2
0.7669 Intermediate Similarity NPD5808 Clinical (unspecified phase)
0.7658 Intermediate Similarity NPD1243 Approved
0.765 Intermediate Similarity NPD6776 Approved
0.765 Intermediate Similarity NPD6782 Approved
0.765 Intermediate Similarity NPD6781 Approved
0.765 Intermediate Similarity NPD6778 Approved
0.765 Intermediate Similarity NPD6780 Approved
0.765 Intermediate Similarity NPD6777 Approved
0.765 Intermediate Similarity NPD6779 Approved
0.7647 Intermediate Similarity NPD6233 Phase 2
0.7647 Intermediate Similarity NPD3926 Phase 2
0.7643 Intermediate Similarity NPD2344 Approved
0.7628 Intermediate Similarity NPD2799 Discontinued
0.761 Intermediate Similarity NPD1878 Clinical (unspecified phase)
0.7597 Intermediate Similarity NPD943 Approved
0.7594 Intermediate Similarity NPD7584 Approved
0.7568 Intermediate Similarity NPD1610 Phase 2
0.7566 Intermediate Similarity NPD1529 Clinical (unspecified phase)
0.7561 Intermediate Similarity NPD3226 Approved
0.7548 Intermediate Similarity NPD5124 Phase 1
0.7548 Intermediate Similarity NPD5123 Clinical (unspecified phase)
0.7528 Intermediate Similarity NPD8150 Discontinued
0.7527 Intermediate Similarity NPD7435 Discontinued
0.7516 Intermediate Similarity NPD7033 Discontinued
0.7516 Intermediate Similarity NPD1509 Clinical (unspecified phase)
0.75 Intermediate Similarity NPD1530 Clinical (unspecified phase)
0.7487 Intermediate Similarity NPD7870 Phase 2
0.7487 Intermediate Similarity NPD7871 Phase 2
0.7484 Intermediate Similarity NPD2424 Discontinued
0.7483 Intermediate Similarity NPD1203 Approved
0.747 Intermediate Similarity NPD7615 Clinical (unspecified phase)
0.7468 Intermediate Similarity NPD6099 Approved
0.7468 Intermediate Similarity NPD6100 Approved
0.7455 Intermediate Similarity NPD7458 Discontinued
0.7453 Intermediate Similarity NPD6190 Approved
0.7453 Intermediate Similarity NPD2309 Approved
0.7444 Intermediate Similarity NPD8397 Clinical (unspecified phase)
0.7442 Intermediate Similarity NPD7184 Clinical (unspecified phase)
0.7439 Intermediate Similarity NPD6980 Clinical (unspecified phase)
0.7436 Intermediate Similarity NPD6355 Discontinued
0.7433 Intermediate Similarity NPD7698 Approved
0.7433 Intermediate Similarity NPD7697 Approved
0.7433 Intermediate Similarity NPD7696 Phase 3
0.743 Intermediate Similarity NPD8434 Phase 2
0.7427 Intermediate Similarity NPD7199 Phase 2
0.7421 Intermediate Similarity NPD2346 Discontinued
0.7421 Intermediate Similarity NPD8151 Discontinued
0.7415 Intermediate Similarity NPD1548 Phase 1
0.7403 Intermediate Similarity NPD3027 Phase 3
0.7377 Intermediate Similarity NPD6534 Approved
0.7377 Intermediate Similarity NPD6535 Approved
0.7374 Intermediate Similarity NPD8055 Clinical (unspecified phase)
0.7368 Intermediate Similarity NPD7701 Phase 2
0.7344 Intermediate Similarity NPD7783 Phase 2
0.7344 Intermediate Similarity NPD7782 Clinical (unspecified phase)
0.7338 Intermediate Similarity NPD6832 Phase 2
0.7337 Intermediate Similarity NPD4362 Clinical (unspecified phase)
0.7337 Intermediate Similarity NPD4361 Phase 2
0.7329 Intermediate Similarity NPD1652 Phase 2
0.7299 Intermediate Similarity NPD7784 Clinical (unspecified phase)
0.7296 Intermediate Similarity NPD651 Clinical (unspecified phase)
0.7292 Intermediate Similarity NPD7874 Approved
0.7292 Intermediate Similarity NPD7875 Clinical (unspecified phase)
0.7288 Intermediate Similarity NPD3823 Discontinued
0.7284 Intermediate Similarity NPD6398 Clinical (unspecified phase)
0.7283 Intermediate Similarity NPD5710 Approved
0.7283 Intermediate Similarity NPD7229 Phase 3
0.7283 Intermediate Similarity NPD5711 Approved
0.7273 Intermediate Similarity NPD7501 Clinical (unspecified phase)
0.7261 Intermediate Similarity NPD4060 Phase 1
0.7258 Intermediate Similarity NPD7699 Phase 2
0.7258 Intermediate Similarity NPD7700 Phase 2
0.7256 Intermediate Similarity NPD6143 Clinical (unspecified phase)
0.7254 Intermediate Similarity NPD7801 Approved
0.7253 Intermediate Similarity NPD4287 Approved
0.725 Intermediate Similarity NPD5406 Approved
0.725 Intermediate Similarity NPD5408 Approved
0.725 Intermediate Similarity NPD5405 Approved
0.725 Intermediate Similarity NPD5404 Approved
0.7244 Intermediate Similarity NPD3268 Approved
0.7219 Intermediate Similarity NPD37 Approved
0.7219 Intermediate Similarity NPD6844 Discontinued
0.7216 Intermediate Similarity NPD7228 Approved
0.7215 Intermediate Similarity NPD1933 Approved
0.7215 Intermediate Similarity NPD230 Phase 1
0.7212 Intermediate Similarity NPD4662 Approved
0.7212 Intermediate Similarity NPD4661 Approved
0.7209 Intermediate Similarity NPD6234 Discontinued
0.7208 Intermediate Similarity NPD2798 Approved
0.72 Intermediate Similarity NPD4575 Clinical (unspecified phase)
0.72 Intermediate Similarity NPD2403 Approved
0.7196 Intermediate Similarity NPD6823 Phase 2
0.7193 Intermediate Similarity NPD4966 Approved
0.7193 Intermediate Similarity NPD4967 Phase 2
0.7193 Intermediate Similarity NPD4965 Approved
0.719 Intermediate Similarity NPD3225 Approved
0.7188 Intermediate Similarity NPD7585 Approved
0.7186 Intermediate Similarity NPD1653 Approved
0.7179 Intermediate Similarity NPD4625 Phase 3
0.7178 Intermediate Similarity NPD7003 Approved
0.7171 Intermediate Similarity NPD9717 Approved
0.7169 Intermediate Similarity NPD5049 Phase 3
0.7161 Intermediate Similarity NPD2861 Phase 2
0.7152 Intermediate Similarity NPD7213 Phase 3
0.7152 Intermediate Similarity NPD7212 Phase 2
0.7143 Intermediate Similarity NPD2797 Approved
0.7135 Intermediate Similarity NPD7583 Approved
0.7135 Intermediate Similarity NPD1729 Discontinued

Structure

External Identifiers

PubChem CID   44559902
ChEMBL   CHEMBL454853
ZINC  

Physicochemical Properties

Molecular Weight:  394.11
ALogP:  -2.4707
MLogP:  3.11
XLogP:  2.132
# Rotatable Bonds:  8
Polar Surface Area:  127.45
# H-Bond Aceptor:  2
# H-Bond Donor:  5
# Rings:  4
# Heavy Atoms:  29

Download Data

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General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs