Natural Product: NPC193280

Natural Product ID:  NPC193280
Common Name:   Valinomycin
IUPAC Name:   (3S,6S,9R,12R,15S,18S,21R,24R,27S,30S,33R,36R)-6,18,30-trimethyl-3,9,12,15,21,24,27,33,36-nona(propan-2-yl)-1,7,13,19,25,31-hexaoxa-4,10,16,22,28,34-hexazacyclohexatriacontane-2,5,8,11,14,17,20,23,26,29,32,35-dodecone
Synonyms:   Valino; Valinomycin
Molecular Formula:   C54H90N6O18
Standard InCHIKey:  FCFNRCROJUBPLU-DNDCDFAISA-N
Standard InCHI:  InChI=1S/C54H90N6O18/c1-22(2)34-49(67)73-31(19)43(61)55-38(26(9)10)53(71)77-41(29(15)16)47(65)59-36(24(5)6)51(69)75-33(21)45(63)57-39(27(11)12)54(72)78-42(30(17)18)48(66)60-35(23(3)4)50(68)74-32(20)44(62)56-37(25(7)8)52(70)76-40(28(13)14)46(64)58-34/h22-42H,1-21H3,(H,55,61)(H,56,62)(H,57,63)(H,58,64)(H,59,65)(H,60,66)/t31-,32-,33-,34+,35+,36+,37-,38-,39-,40+,41+,42+/m0/s1
Canonical SMILES:  C[C@@H]1OC(=O)[C@H](N=C(O)[C@H](OC(=O)[C@@H](N=C(O)[C@H](C)OC(=O)[C@H](N=C(O)[C@H](OC(=O)[C@@H](N=C([C@@H](OC(=O)[C@H](N=C([C@H](OC(=O)[C@@H](N=C1O)C(C)C)C(C)C)O)C(C)C)C)O)C(C)C)C(C)C)C(C)C)C(C)C)C(C)C)C(C)C
First Find Year:  
Max Developmental Stage:  
Synthetic Gene Cluster:   ;

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO33228 bacillus silvestris Species NA NA PMID[19226154]

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT83 Cell Line MCF7 Homo sapiens Activity = 18.15 % PubChem BioAssay data set
NPT783 Cell Line MIA PaCa-2 Homo sapiens Activity = 62 % 10.1016/j.cropro.2012.12.009
NPT1018 Organism Trypanosoma brucei Trypanosoma brucei Activity = 97.3 % 22206869
NPT323 Cell Line SW-620 Homo sapiens IC50 = 0.1 nM 22304344
NPT397 Cell Line NCI-H460 Homo sapiens IC50 = 1 nM 15974627
NPT713 Individual Protein Bile salt export pump Homo sapiens IC50 = 7200 nM 15620242
NPT2 Others Unspecified Ratio CC50/EC50 = 41.4 15270556
NPT575 Cell Line KM-20L2 Homo sapiens GI50 = 0.0008 ug/ml 21481593
NPT90 Cell Line DU-145 Homo sapiens GI50 = 0.0035 ug/ml 21481593
NPT1108 Organism Mycobacterium bovis BCG Mycobacterium bovis BCG MIC = 0.4 ug/ml Open TG-GATES in vivo data: Organ Weight
NPT1108 Organism Mycobacterium bovis BCG Mycobacterium bovis BCG MIC = 0.2 ug/ml Open TG-GATES in vivo data: Organ Weight
NPT83 Cell Line MCF7 Homo sapiens Activity = 25.79 % DrugMatrix in vivo data: Biochemistry
NPT1515 Organism SARS coronavirus SARS coronavirus Inhibition < 25 % 15646539
NPT783 Cell Line MIA PaCa-2 Homo sapiens Activity = 18 % 8277314
NPT16 Organism Staphylococcus aureus Staphylococcus aureus Activity < 40 % 10.6019/CHEMBL1201861
NPT395 Cell Line SF-268 Homo sapiens GI50 = 0.0027 ug/ml 24697496
NPT783 Cell Line MIA PaCa-2 Homo sapiens Activity = 49 % 18070962
NPT783 Cell Line MIA PaCa-2 Homo sapiens Activity = 23 % 18070962
NPT783 Cell Line MIA PaCa-2 Homo sapiens Activity = 19 % 18070962
NPT65 Cell Line HepG2 Homo sapiens Activity = 40.3 % 21507644
NPT1515 Organism SARS coronavirus SARS coronavirus Inhibition = 50 % 24128115
NPT1515 Organism SARS coronavirus SARS coronavirus Inhibition = 25 % 10425119
NPT76 Cell Line C6 Rattus norvegicus IC50 = 0.4 nM 20627740
NPT65 Cell Line HepG2 Homo sapiens IC50 = 0.8 nM 20627740
NPT179 Cell Line A2780 Homo sapiens IC50 = 2180 nM 20627740
NPT165 Cell Line HeLa Homo sapiens IC50 = 1 nM 20000781
NPT17 Organism Staphylococcus epidermidis Staphylococcus epidermidis Activity < 40 % 14643343
NPT189 Cell Line Vero Chlorocebus aethiops CC50 = 67500 nM 21737288
NPT66 Individual Protein Acetylcholinesterase Electrophorus electricus Inhibition = 16.65 % DrugMatrix in vitro pharmacology data
NPT1515 Organism SARS coronavirus SARS coronavirus Inhibition = 25 % 9281595
NPT168 Cell Line P388 Mus musculus ED50 = 0.12 ug/ml 26649907
NPT88 Organism Mycobacterium tuberculosis Mycobacterium tuberculosis FC >= 2 26793989
NPT471 Organism Trypanosoma brucei brucei Trypanosoma brucei brucei Activity = 70 % PubChem BioAssay data set
NPT88 Organism Mycobacterium tuberculosis Mycobacterium tuberculosis FC >= 2 19035792
NPT83 Cell Line MCF7 Homo sapiens IC50 = 500 nM 15730254
NPT1515 Organism SARS coronavirus SARS coronavirus EC50 = 1630 nM 16854077
NPT2 Others Unspecified Ratio IC50 = 3 17967541
NPT2 Others Unspecified Ratio IC50 = 3 17981462
NPT83 Cell Line MCF7 Homo sapiens Activity = 16 % 23978065
NPT88 Organism Mycobacterium tuberculosis Mycobacterium tuberculosis FC >= 2 18519722
NPT668 Individual Protein P-glycoprotein 1 Homo sapiens IC50 = 3200 nM 18243700
NPT783 Cell Line MIA PaCa-2 Homo sapiens IC50 = 1 nM 11312930
NPT83 Cell Line MCF7 Homo sapiens Activity = 56.07 % 24673739
NPT2 Others Unspecified Survival = 50 % 20025236
NPT783 Cell Line MIA PaCa-2 Homo sapiens Activity = 35 % DrugMatrix in vitro pharmacology data
NPT783 Cell Line MIA PaCa-2 Homo sapiens Activity = 60 % DrugMatrix in vitro pharmacology data
NPT783 Cell Line MIA PaCa-2 Homo sapiens Activity = 24 % DrugMatrix in vitro pharmacology data
NPT783 Cell Line MIA PaCa-2 Homo sapiens Activity = 42 % DrugMatrix in vitro pharmacology data
NPT783 Cell Line MIA PaCa-2 Homo sapiens Activity = 63 % DrugMatrix in vitro pharmacology data
NPT783 Cell Line MIA PaCa-2 Homo sapiens Activity = 12 % DrugMatrix in vitro pharmacology data
NPT67 Individual Protein Cholinesterase Equus caballus Inhibition = -1.5 % 26186257
NPT83 Cell Line MCF7 Homo sapiens GI50 = 0.001 ug/ml 18077363
NPT1081 Cell Line BXPC-3 Homo sapiens GI50 = 0.0019 ug/ml 18077363
NPT397 Cell Line NCI-H460 Homo sapiens GI50 = 0.0025 ug/ml 22180047
NPT83 Cell Line MCF7 Homo sapiens IC50 = 1770 nM 15043423
NPT88 Organism Mycobacterium tuberculosis Mycobacterium tuberculosis FC >= 2 10869199

  Similar Natural Products in NPASS

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC193280 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
1.0 High Similarity NPC314273
0.9545 High Similarity NPC141325
0.9403 High Similarity NPC138435
0.913 High Similarity NPC476324
0.913 High Similarity NPC476130
0.8676 High Similarity NPC476285
0.8676 High Similarity NPC476291
0.831 Intermediate Similarity NPC476248
0.7922 Intermediate Similarity NPC246005
0.7887 Intermediate Similarity NPC478256
0.7703 Intermediate Similarity NPC472595
0.75 Intermediate Similarity NPC472594
0.7467 Intermediate Similarity NPC86064
0.7439 Intermediate Similarity NPC477728
0.7333 Intermediate Similarity NPC43219
0.7125 Intermediate Similarity NPC314466
0.7073 Intermediate Similarity NPC145748
0.7073 Intermediate Similarity NPC95478
0.7073 Intermediate Similarity NPC155670
0.7027 Intermediate Similarity NPC474299
0.7027 Intermediate Similarity NPC475808
0.7027 Intermediate Similarity NPC474298
0.7027 Intermediate Similarity NPC28348
0.7027 Intermediate Similarity NPC473985
0.6988 Remote Similarity NPC227051
0.6974 Remote Similarity NPC474403
0.6957 Remote Similarity NPC473599
0.6951 Remote Similarity NPC477730
0.68 Remote Similarity NPC472579
0.6782 Remote Similarity NPC477729
0.6716 Remote Similarity NPC321118
0.6716 Remote Similarity NPC316889
0.6667 Remote Similarity NPC315535
0.6667 Remote Similarity NPC315131
0.6667 Remote Similarity NPC478017
0.6629 Remote Similarity NPC208537
0.6629 Remote Similarity NPC270005
0.6571 Remote Similarity NPC328447
0.6543 Remote Similarity NPC316242
0.6463 Remote Similarity NPC473984
0.6389 Remote Similarity NPC471129
0.6364 Remote Similarity NPC328378
0.6364 Remote Similarity NPC29598
0.6364 Remote Similarity NPC212866
0.6351 Remote Similarity NPC145658
0.6338 Remote Similarity NPC472578
0.6301 Remote Similarity NPC477644
0.625 Remote Similarity NPC317143
0.625 Remote Similarity NPC316826
0.625 Remote Similarity NPC327748
0.625 Remote Similarity NPC321468
0.6234 Remote Similarity NPC470110
0.6234 Remote Similarity NPC10716
0.6222 Remote Similarity NPC474593
0.6222 Remote Similarity NPC475801
0.6197 Remote Similarity NPC317147
0.6197 Remote Similarity NPC318260
0.6176 Remote Similarity NPC322946
0.6164 Remote Similarity NPC329564
0.6164 Remote Similarity NPC327170
0.6154 Remote Similarity NPC474576
0.6125 Remote Similarity NPC320865
0.6125 Remote Similarity NPC477641
0.6125 Remote Similarity NPC477643
0.6119 Remote Similarity NPC80350
0.6104 Remote Similarity NPC470109
0.6087 Remote Similarity NPC471098
0.6087 Remote Similarity NPC62263
0.6087 Remote Similarity NPC173763
0.6076 Remote Similarity NPC477642
0.6049 Remote Similarity NPC178919
0.6049 Remote Similarity NPC263281
0.6042 Remote Similarity NPC220234
0.6026 Remote Similarity NPC195165
0.6023 Remote Similarity NPC476523
0.5978 Remote Similarity NPC477538
0.5977 Remote Similarity NPC474312
0.5974 Remote Similarity NPC474402
0.5974 Remote Similarity NPC470108
0.5957 Remote Similarity NPC470283
0.5905 Remote Similarity NPC63191
0.5905 Remote Similarity NPC471202
0.5876 Remote Similarity NPC475440
0.5862 Remote Similarity NPC84128
0.5862 Remote Similarity NPC53858
0.5859 Remote Similarity NPC124554
0.5859 Remote Similarity NPC5864
0.5859 Remote Similarity NPC301148
0.5849 Remote Similarity NPC472536
0.5849 Remote Similarity NPC103391
0.5844 Remote Similarity NPC41429
0.5842 Remote Similarity NPC475918
0.5823 Remote Similarity NPC306696
0.5811 Remote Similarity NPC321536
0.5802 Remote Similarity NPC477200
0.58 Remote Similarity NPC198344
0.5797 Remote Similarity NPC326283
0.5797 Remote Similarity NPC321394
0.5789 Remote Similarity NPC145627
0.5789 Remote Similarity NPC327252
0.578 Remote Similarity NPC477237
0.5765 Remote Similarity NPC37681
0.5765 Remote Similarity NPC473741
0.5765 Remote Similarity NPC477145
0.575 Remote Similarity NPC126779
0.5743 Remote Similarity NPC124549
0.5743 Remote Similarity NPC323720
0.5743 Remote Similarity NPC74035
0.5735 Remote Similarity NPC227850
0.5714 Remote Similarity NPC327250
0.5714 Remote Similarity NPC475758
0.5699 Remote Similarity NPC39290
0.5699 Remote Similarity NPC159369
0.5698 Remote Similarity NPC31756
0.5694 Remote Similarity NPC327831
0.5694 Remote Similarity NPC322573
0.5676 Remote Similarity NPC477238
0.5672 Remote Similarity NPC297220
0.5657 Remote Similarity NPC475791
0.5657 Remote Similarity NPC13175
0.5641 Remote Similarity NPC128559
0.5634 Remote Similarity NPC329495
0.5632 Remote Similarity NPC476117
0.5632 Remote Similarity NPC476243
0.5632 Remote Similarity NPC476156
0.5632 Remote Similarity NPC476137
0.5618 Remote Similarity NPC47135
0.56 Remote Similarity NPC320598
0.56 Remote Similarity NPC254541

  Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC193280 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.7273 Intermediate Similarity NPD2689 Clinical (unspecified phase)
0.7179 Intermediate Similarity NPD3160 Suspended
0.7143 Intermediate Similarity NPD1453 Phase 1
0.7027 Intermediate Similarity NPD3724 Clinical (unspecified phase)
0.6716 Remote Similarity NPD9419 Clinical (unspecified phase)
0.6667 Remote Similarity NPD7917 Clinical (unspecified phase)
0.6667 Remote Similarity NPD7918 Clinical (unspecified phase)
0.6571 Remote Similarity NPD9661 Approved
0.6533 Remote Similarity NPD2263 Discontinued
0.6484 Remote Similarity NPD8394 Approved
0.6404 Remote Similarity NPD3716 Discontinued
0.6364 Remote Similarity NPD7840 Approved
0.6176 Remote Similarity NPD9441 Phase 2
0.617 Remote Similarity NPD6428 Approved
0.6154 Remote Similarity NPD1815 Discontinued
0.6154 Remote Similarity NPD6094 Approved
0.6154 Remote Similarity NPD6095 Approved
0.6143 Remote Similarity NPD4277 Approved
0.6143 Remote Similarity NPD4276 Approved
0.6133 Remote Similarity NPD364 Discontinued
0.6125 Remote Similarity NPD2256 Clinical (unspecified phase)
0.6064 Remote Similarity NPD7844 Discontinued
0.6 Remote Similarity NPD5375 Phase 3
0.596 Remote Similarity NPD8045 Clinical (unspecified phase)
0.5921 Remote Similarity NPD1151 Approved
0.5867 Remote Similarity NPD574 Approved
0.5867 Remote Similarity NPD3193 Approved
0.5867 Remote Similarity NPD3192 Approved
0.5862 Remote Similarity NPD1448 Clinical (unspecified phase)
0.5844 Remote Similarity NPD1831 Phase 3
0.5824 Remote Similarity NPD4759 Clinical (unspecified phase)
0.5797 Remote Similarity NPD9677 Phase 3
0.5797 Remote Similarity NPD9678 Approved
0.5797 Remote Similarity NPD329 Discontinued
0.5789 Remote Similarity NPD575 Clinical (unspecified phase)
0.575 Remote Similarity NPD4242 Approved
0.5732 Remote Similarity NPD6944 Clinical (unspecified phase)
0.5732 Remote Similarity NPD3187 Discontinued
0.573 Remote Similarity NPD3733 Clinical (unspecified phase)
0.5696 Remote Similarity NPD1429 Clinical (unspecified phase)
0.5676 Remote Similarity NPD9433 Approved
0.5625 Remote Similarity NPD4241 Registered
0.5619 Remote Similarity NPD6421 Discontinued
0.5618 Remote Similarity NPD7345 Approved
0.5618 Remote Similarity NPD7643 Phase 1
0.5616 Remote Similarity NPD9659 Approved
0.5604 Remote Similarity NPD7759 Phase 2
0.5604 Remote Similarity NPD7760 Phase 2

Structure

External Identifiers

PubChem CID   3000706
ChEMBL   CHEMBL223643
ZINC  

Physicochemical Properties

Molecular Weight:  1110.63
ALogP:  2.3886
MLogP:  4.76
XLogP:  6.537
# Rotatable Bonds:  36
Polar Surface Area:  353.34
# H-Bond Aceptor:  24
# H-Bond Donor:  6
# Rings:  1
# Heavy Atoms:  78

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