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Collective Molecular Activities of the Plant: Carpobrotus Edulis


Example Image
PLANiTS DNA barcode

Click for details-----ITS

NA

Click for details-----ITS1

NA

Click for details-----ITS2

NA
Taxonomic Information

Plant ID: NPO10818
Plant Latin Name: Carpobrotus Edulis
Taxonomy Genus: Carpobrotus
Taxonomy Family: Aizoaceae

Plant External Links:

NCBI TaxonomyDB: 379215
Plant-of-the-World-Online: 1200427-2

Used in Medicines

Country/Region:
Madagascar; Zimbabwe; Angola; Swaziland; South Africa

Traditional Medicine System:

Geographical Distribution

Brazil; Madagascar; Italy; Ireland; France; Swaziland; Bolivia; Australia; Algeria; Cape Verde; Zimbabwe; Spain; Libya; United States; Morocco; New Zealand; Albania; Angola; Portugal; Mexico; Tunisia; South Africa; United Kingdom; Greece

Geographical Distribution
+
−
See the Plant Occurrence Worldwide with Latitude and Longitude Available

Compounds Summary

Overview of Ingredients

179 All known Ingredients in Total

Unique ingredients have been isolated from this plant.
Plant-Ingredients Associations were manually curated from publications or collected from other databases.


52 Ingredients with Acceptable Bioavailablity

Unique ingredients exhibit acceptable human oral bioavailablity, according to the criteria of SwissADME [PMID: 28256516] and HobPre [PMID: 34991690]. The criteria details:

SwissADME: six descriptors are used by SwissADME to evaluate the oral bioavailability of a natural product:
  ☑ LIPO(Lipophility): -0.7 < XLOGP3 < +5.0
  ☑ SIZE: 150g/mol < MW < 500g/mol
  ☑ POLAR(Polarity): 20Ų < TPSA < 130Ų
  ☑ INSOLU(Insolubility): -6 < Log S (ESOL) < 0
  ☑ INSATU(Insaturation): 0.25 < Fraction Csp3 < 1
  ☑ FLEX(Flexibility): 0 < Num. rotatable bonds < 9

If 6 descriptors of a natural plant satisfy the above rules, it will be labeled high HOB.
HobPre: A natural plant ingredient with HobPre score >0.5 is labeled high human oral availability (HOB)

60 Ingredients with experimental-derived Activity

Unique ingredients have activity data available.






Ingredient Structrual Cards


Ingredient ID: NPC96558

Ingredient ID: NPC94509

Ingredient ID: NPC93220

Ingredient ID: NPC92169

Ingredient ID: NPC91693

Ingredient ID: NPC9000

Ingredient ID: NPC89929

Ingredient ID: NPC88101

Ingredient ID: NPC8694

Ingredient ID: NPC85813

Ingredient ID: NPC82884

Ingredient ID: NPC80507

Ingredient ID: NPC78992

Ingredient ID: NPC75789

Ingredient ID: NPC73479

Ingredient ID: NPC71171

Ingredient ID: NPC68184

Ingredient ID: NPC67251

Ingredient ID: NPC65870

Ingredient ID: NPC61893

Ingredient ID: NPC61771

Ingredient ID: NPC61694

Ingredient ID: NPC596

Ingredient ID: NPC54950

Ingredient ID: NPC54105

Ingredient ID: NPC51888

Ingredient ID: NPC48236

Ingredient ID: NPC47815

Ingredient ID: NPC45659

Ingredient ID: NPC45218

Ingredient ID: NPC430

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Ingredient ID: NPC37685

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Ingredient ID: NPC309096

Ingredient ID: NPC307050

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Ingredient ID: NPC179393

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Ingredient ID: NPC120872

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Ingredient ID: NPC120426

Ingredient ID: NPC117322

Ingredient ID: NPC115334

Ingredient ID: NPC114973

Ingredient ID: NPC114019

Ingredient ID: NPC113727

Ingredient ID: NPC105734

Ingredient ID: NPC105534

Ingredient ID: NPC103349

Ingredient ID: NPC102527

Ingredient ID: NPC102465

Classification of Human Proteins Collectively Targeted by the Plant

Target Activity Range: ≤ 1μM
Target Type: Individual Protein of Homo sapiens
*The classification criteria of Drug Transporter (DTP), CYP450 are referred to DrugMap. Other molecular targets in CMAUP are classified as therapeutic targets.
.

Detailed Information of Target Proteins

Target TypeProtein ClassGene IDProtein NameUniprot IDTarget ChEMBL ID
Cytochrome P450 Cytochrome P450 family 1 CYP1B1 Cytochrome P450 1B1 Q16678 CHEMBL4878
Therapeutic Target Enzyme AKR1C3 Aldo-keto-reductase family 1 member C3 P42330 CHEMBL4681
Therapeutic Target Enzyme NOX4 NADPH oxidase 4 Q9NPH5 CHEMBL1250375
Therapeutic Target Fatty acid binding protein family FABP5 Fatty acid binding protein epidermal Q01469 CHEMBL3674
Therapeutic Target Lyase CA4 Carbonic anhydrase IV P22748 CHEMBL3729
Therapeutic Target Lyase CA12 Carbonic anhydrase XII O43570 CHEMBL3242
Therapeutic Target Lyase CA7 Carbonic anhydrase VII P43166 CHEMBL2326
Therapeutic Target Metallo protease MMP12 Matrix metalloproteinase 12 P39900 CHEMBL4393
Therapeutic Target Nuclear hormone receptor subfamily 1 PPARA Peroxisome proliferator-activated receptor alpha Q07869 CHEMBL239
Therapeutic Target Oxidoreductase ALOX15 Arachidonate 15-lipoxygenase P16050 CHEMBL2903
Showing 1 to 10 of 23 entries
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Clinical Trials Summary
Overview

Clinical trials associated with plant from natural product (NP) & plant level:

Clinical trials type Number of clinical trials
NP level32
Clinical trial details
NCT IDTitleConditionForm in clinical useAssociated by plant or compound
NCT00029679 Borage Oil and Ginkgo Biloba (EGb 761) in Asthma asthma Linoleic Acid (NPC85813) NP level
NCT00031096 Comparison of Efficacy and Safety of Azelaic Acid 15% Gel With Its Vehicle in Subjects With Mild to Moderate Acne acne Azelaic Acid (NPC214610) NP level
NCT00204932 Effects of CLA Supplements on Body Weight and Fat Oxidation obesity Linoleic Acid (NPC85813) NP level
NCT00403949 A Study of Azelaic Acid (AzA) 15% in Topical Treatment of Mild to Moderate Perioral Dermatitis Dermatitis, Perioral Azelaic Acid (NPC214610) NP level
NCT00408330 A Study of Azelaic Acid (AzA) 15% Gel in the Treatment of Seborrheic Dermatitis of the Face seborrheic dermatitis Azelaic Acid (NPC214610) NP level
NCT00417937 A Multicenter Trial of a Topical Medication for Papulopustular Rosacea Applied Twice Daily Versus Once Daily rosacea Azelaic Acid (NPC214610) NP level
NCT00607945 Dietary Fatty Acids as Complementary Therapy in Type 2 Diabetes Mellitus type 2 diabetes mellitus Linoleic Acid (NPC85813) NP level
NCT00617903 Exploration of Safety and Efficacy of AzA 15% Foam Twice a Day in Rosacea rosacea Azelaic Acid (NPC214610) NP level
NCT00638196 Placebo vs. Linoleic Acid Controlled Assessment of Treatment Efficacy in MS multiple sclerosis Oleic Acid (NPC261831) NP level
NCT00855595 Efficacy of Topical Azelaic Acid 15% Gel Plus Anti-inflammatory Dose Doxycycline or Metronidazole Gel 1% Plus Anti-inflammatory Dose Doxycycline in Moderate Papulopustular Rosacea rosacea Azelaic Acid (NPC214610) NP level
Showing 1 to 10 of 32 entries
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❱❱❱ Associated Human Diseases and Detailed Association Evidence

 How do we define the Plant-Targeted Human Disease Association?
Associated human diseases of an individual plant are summurized based on FOUR types of association evidence, these include:
❶ Association by Therapeutic Target: Bioactive protein targets of the plant were defined in "Molecular Targets" section, target-disease associations collected from TTD database were subsequently used to build the associations between the plant and its targeted human diseases.
❷ Association by Disease Gene Reversion: Plant and a specific disease will be associated when >= 1 plant target gene overlaped with disease's DEGs.
❸ Association by Clinical Trials of Plant: Plant and a specific disease will be associated when >= 1 clinical trial (the plant is the intervetion) can be matched in ClinicalTrials.gov database.
❹ Association by Clinical Trials of Plant Ingredients: Plant and a specific disease will be associated when >= 1 clinical trial (the plant ingredient is the intervetion) can be matched in ClinicalTrials.gov database.

Associated Disease of the Plant
Association Type & Detailed Evidence
Acne vulgaris
Disease Category: 14.Diseases of the skin
Disease ICD-11 Code: ED80
 NCT01387048,NCT00031096,NCT02058628
Acute diabete complication
Disease Category: 05.Endocrine, nutritional or metabolic diseases
Disease ICD-11 Code: 5A2Y
 AKR1B1,FFAR1,PPARA,DPP4
Acute myeloid leukaemia
Disease Category: 02.Neoplasms
Disease ICD-11 Code: 2A60
 FLT3,TP53,NFKB1,GSK3B
Acute/subacute hepatic failure
Disease Category: 13.Diseases of the digestive system
Disease ICD-11 Code: DB91
 NFKB1
Adenocarcinoma of bronchus or lung
Disease Category: 02.Neoplasms
Disease ICD-11 Code: 2C25.0
 AKR1C3,MMP12,CA7,CA12,XDH
Adenocarcinoma of pancreas
Disease Category: 02.Neoplasms
Disease ICD-11 Code: 2C10.0
 AKR1C3,FABP3,HIF1A,NFE2L2,CYP1B1,DPP4,XDH,CA7,FFAR4,LMNA,ALOX15
Adenocarcinoma of prostate
Disease Category: 02.Neoplasms
Disease ICD-11 Code: 2C82.0
 FABP5,NOX4,ALOX15
Adenocarcinoma of stomach
Disease Category: 02.Neoplasms
Disease ICD-11 Code: 2B72.0
 MMP12,NOX4,ALOX15
Adrenomedullary hyperfunction
Disease Category: 05.Endocrine, nutritional or metabolic diseases
Disease ICD-11 Code: 5A75
 HIF1A
Alzheimer disease
Disease Category: 08.Diseases of the nervous system
Disease ICD-11 Code: 8A20
 FLT3
Showing 1 to 10 of 163 entries
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❱❱❱ Network Visualization of Plant-Targeted Human Disease Associations

Plant-Targeted Human Disease Network 
Data Section
Select to Download
1. General Info & Plant Usage & Geographical Distribution  
2. Plant Ingredients  
3. Collective Molecular Proteins  
4. Collective Enriched Activities  
5. Plant molecular targets overlapping with DEGs  
6. Associated clinical trials  
7. Associated Human Diseases  
>> Targets derived from weak experimental activities
About Us

The CMAUP database is developed by the Bioinformatics & Drug Design group (BIDD) and School of Pharmacy, Fudan University.

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Principle Investigator:
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Prof. Zeng Xian
zengxian@fudan.edu.cn

Developer & Maintainer:
Ph.D. Student Dongyue Hou
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Mr. Hanbo Lin
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Ms. Yuhan Feng
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