Structure

Physi-Chem Properties

Molecular Weight:  1368.42
Volume:  1260.634
LogP:  0.511
LogD:  0.156
LogS:  -2.354
# Rotatable Bonds:  31
TPSA:  516.25
# H-Bond Aceptor:  35
# H-Bond Donor:  14
# Rings:  8
# Heavy Atoms:  35

MedChem Properties

QED Drug-Likeness Score:  0.02
Synthetic Accessibility Score:  7.061
Fsp3:  0.557
Lipinski Rule-of-5:  Rejected
Pfizer Rule:  Accepted
GSK Rule:  Rejected
BMS Rule:  1
Golden Triangle Rule:  Rejected
Chelating Alert:  1
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -6.931
MDCK Permeability:  0.00033233780413866043
Pgp-inhibitor:  0.0
Pgp-substrate:  1.0
Human Intestinal Absorption (HIA):  1.0
20% Bioavailability (F20%):  0.688
30% Bioavailability (F30%):  1.0

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.189
Plasma Protein Binding (PPB):  63.29325485229492%
Volume Distribution (VD):  0.183
Pgp-substrate:  10.084805488586426%

ADMET: Metabolism

CYP1A2-inhibitor:  0.001
CYP1A2-substrate:  0.004
CYP2C19-inhibitor:  0.011
CYP2C19-substrate:  0.047
CYP2C9-inhibitor:  0.003
CYP2C9-substrate:  0.009
CYP2D6-inhibitor:  0.008
CYP2D6-substrate:  0.057
CYP3A4-inhibitor:  0.083
CYP3A4-substrate:  0.007

ADMET: Excretion

Clearance (CL):  0.702
Half-life (T1/2):  0.892

ADMET: Toxicity

hERG Blockers:  0.321
Human Hepatotoxicity (H-HT):  0.086
Drug-inuced Liver Injury (DILI):  0.895
AMES Toxicity:  0.084
Rat Oral Acute Toxicity:  0.006
Maximum Recommended Daily Dose:  0.0
Skin Sensitization:  0.832
Carcinogencity:  0.029
Eye Corrosion:  0.003
Eye Irritation:  0.007
Respiratory Toxicity:  0.001

Download Data

Data Type Select
General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs  

  Natural Product: NPC246024

Natural Product ID:  NPC246024
Common Name*:   Senegose A
IUPAC Name:   [(2S,3S,4R,5R)-2-[(2R,3R,4S,5R,6R)-6-(acetyloxymethyl)-4-[(2S,3R,4R,5S,6R)-6-(acetyloxymethyl)-3,4-dihydroxy-5-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxyoxan-2-yl]oxy-5-[(E)-3-(4-hydroxy-3-methoxyphenyl)prop-2-enoyl]oxy-3-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxyoxan-2-yl]oxy-4-hydroxy-2-[[(E)-3-(4-hydroxy-3-methoxyphenyl)prop-2-enoyl]oxymethyl]-5-(hydroxymethyl)oxolan-3-yl] benzoate
Synonyms:  
Standard InCHIKey:  KEOOBLDQSOGREN-HSMVKCCNSA-N
Standard InCHI:  InChI=1S/C61H76O35/c1-26(65)83-23-38-51(91-57-48(77)45(74)42(71)35(20-62)86-57)47(76)50(79)59(88-38)92-53-52(90-41(70)17-13-29-11-15-32(68)34(19-29)82-4)39(24-84-27(2)66)89-60(54(53)93-58-49(78)46(75)43(72)36(21-63)87-58)96-61(25-85-40(69)16-12-28-10-14-31(67)33(18-28)81-3)55(44(73)37(22-64)95-61)94-56(80)30-8-6-5-7-9-30/h5-19,35-39,42-55,57-60,62-64,67-68,71-79H,20-25H2,1-4H3/b16-12+,17-13+/t35-,36-,37-,38-,39-,42-,43-,44-,45+,46+,47-,48-,49-,50-,51-,52-,53+,54-,55+,57+,58+,59+,60-,61+/m1/s1
SMILES:  OC[C@H]1O[C@@]([C@H]([C@@H]1O)OC(=O)c1ccccc1)(COC(=O)/C=C/c1ccc(c(c1)OC)O)O[C@H]1O[C@H](COC(=O)C)[C@H]([C@@H]([C@H]1O[C@@H]1O[C@H](CO)[C@H]([C@@H]([C@H]1O)O)O)O[C@@H]1O[C@H](COC(=O)C)[C@H]([C@@H]([C@H]1O)O)O[C@@H]1O[C@H](CO)[C@H]([C@@H]([C@H]1O)O)O)OC(=O)/C=C/c1ccc(c(c1)OC)O
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL504200
PubChem CID:   44566678
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0004603] Organic oxygen compounds
      • [CHEMONTID:0000323] Organooxygen compounds
        • [CHEMONTID:0000011] Carbohydrates and carbohydrate conjugates
          • [CHEMONTID:0000198] Oligosaccharides

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO28295 Foeniculum vulgare Species Apiaceae Eukaryota n.a. leaf n.a. DOI[10.1016/S0031-9422(00)94055-X]
NPO28295 Foeniculum vulgare Species Apiaceae Eukaryota n.a. flower n.a. DOI[10.3390/70200245]
NPO27808 Cremanthodium discoideum Species Asteraceae Eukaryota n.a. n.a. n.a. PMID[10579856]
NPO27081 Clavularia inflata Species Clavulariidae Eukaryota n.a. Formosan soft coral n.a. PMID[11520220]
NPO28295 Foeniculum vulgare Species Apiaceae Eukaryota n.a. n.a. n.a. PMID[24617303]
NPO27724.1 Polygala senega var. latifolia Varieties Polygalaceae Eukaryota n.a. root n.a. PMID[8582013]
NPO27724.1 Polygala senega var. latifolia Varieties Polygalaceae Eukaryota n.a. rhizome n.a. PMID[8706138]
NPO27724.1 Polygala senega var. latifolia Varieties Polygalaceae Eukaryota n.a. root n.a. PMID[8706138]
NPO27724 Polygala senega Species Polygalaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO28295 Foeniculum vulgare Species Apiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO28295 Foeniculum vulgare Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO27724.1 Polygala senega var. latifolia Varieties Polygalaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28491 Astrotrichilia voamatata Species Meliaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO27724 Polygala senega Species Polygalaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO27724 Polygala senega Species Polygalaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO28295 Foeniculum vulgare Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO27724 Polygala senega Species Polygalaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO28295 Foeniculum vulgare Species Apiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO27622 Ligularia cyathiceps Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27808 Cremanthodium discoideum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28102 Baccharis tucumanensis Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28210 Myrmecia gulosa Species Formicidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28521 Delphinium vestitum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27081 Clavularia inflata Species Clavulariidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27934 Mezilaurus synandra Species Lauraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20099 Petalostylis labicheoides Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27846 Aeodes ulvoidea Species Halymeniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28081 Actinoplanes arizonaensis Species Micromonosporaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO28476 Doris tricolor Species Dorididae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28491 Astrotrichilia voamatata Species Meliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19588 Piper coruscans Species Piperaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28295 Foeniculum vulgare Species Apiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28028 Aquilegia atrata Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO27724 Polygala senega Species Polygalaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28312 Lentinus squarrosulus Species Lentinaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3513 Fuscoporia senex Species Hymenochaetaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28154 Acrodontium salmoneum Species Mycosphaerellaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO29361 Chondrus yendoi Species Gigartinaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17149 Heracleum candicans Species Apiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28261 Pyrophorus pellucens Species Elateridae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8672 Ophiura ophiura Species Ophiuridae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT32 Organism Mus musculus Mus musculus Activity = 197.0 mg PMID[458610]
NPT32 Organism Mus musculus Mus musculus Activity = 199.0 mg PMID[458610]
NPT32 Organism Mus musculus Mus musculus Activity = 401.0 mg PMID[458610]
NPT32 Organism Mus musculus Mus musculus Activity = 368.0 mg PMID[458610]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC246024 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9198 High Similarity NPC658
0.9198 High Similarity NPC197708
0.9156 High Similarity NPC257970
0.9156 High Similarity NPC470927
0.915 High Similarity NPC192763
0.915 High Similarity NPC215095
0.915 High Similarity NPC201148
0.915 High Similarity NPC80732
0.915 High Similarity NPC3460
0.915 High Similarity NPC28651
0.915 High Similarity NPC261122
0.915 High Similarity NPC199311
0.915 High Similarity NPC300262
0.915 High Similarity NPC210611
0.9114 High Similarity NPC133984
0.9114 High Similarity NPC226759
0.9097 High Similarity NPC85192
0.9097 High Similarity NPC143480
0.9097 High Similarity NPC125823
0.9097 High Similarity NPC7145
0.9091 High Similarity NPC306890
0.9091 High Similarity NPC259347
0.9091 High Similarity NPC473427
0.9091 High Similarity NPC476398
0.9091 High Similarity NPC471062
0.9091 High Similarity NPC94871
0.9091 High Similarity NPC476386
0.9091 High Similarity NPC470933
0.9085 High Similarity NPC102851
0.9085 High Similarity NPC5786
0.9032 High Similarity NPC188393
0.9032 High Similarity NPC470934
0.8987 High Similarity NPC131532
0.8968 High Similarity NPC111785
0.8961 High Similarity NPC232992
0.8954 High Similarity NPC216819
0.8954 High Similarity NPC287615
0.8954 High Similarity NPC83743
0.8954 High Similarity NPC262182
0.8924 High Similarity NPC327032
0.8924 High Similarity NPC194095
0.8924 High Similarity NPC191046
0.8917 High Similarity NPC289967
0.8917 High Similarity NPC478268
0.8917 High Similarity NPC472612
0.8917 High Similarity NPC472611
0.8916 High Similarity NPC316539
0.891 High Similarity NPC476871
0.8889 High Similarity NPC33298
0.8889 High Similarity NPC285108
0.8834 High Similarity NPC121290
0.8831 High Similarity NPC34587
0.8831 High Similarity NPC252292
0.8831 High Similarity NPC100998
0.8831 High Similarity NPC34927
0.8831 High Similarity NPC476382
0.8824 High Similarity NPC199172
0.8824 High Similarity NPC35924
0.8812 High Similarity NPC471405
0.8797 High Similarity NPC106818
0.8797 High Similarity NPC36130
0.8797 High Similarity NPC134905
0.8795 High Similarity NPC43434
0.8795 High Similarity NPC472129
0.8774 High Similarity NPC229505
0.8774 High Similarity NPC476865
0.8766 High Similarity NPC64195
0.8766 High Similarity NPC110063
0.8765 High Similarity NPC289346
0.8765 High Similarity NPC469371
0.8758 High Similarity NPC472860
0.8757 High Similarity NPC120952
0.875 High Similarity NPC10205
0.8743 High Similarity NPC469773
0.8743 High Similarity NPC469772
0.8743 High Similarity NPC469778
0.8743 High Similarity NPC295941
0.8743 High Similarity NPC100925
0.8743 High Similarity NPC469774
0.8743 High Similarity NPC32723
0.8743 High Similarity NPC469777
0.8743 High Similarity NPC135334
0.8743 High Similarity NPC469775
0.8743 High Similarity NPC469776
0.8742 High Similarity NPC157898
0.8742 High Similarity NPC87403
0.8735 High Similarity NPC472133
0.8735 High Similarity NPC95421
0.8735 High Similarity NPC21956
0.8735 High Similarity NPC149300
0.8735 High Similarity NPC198125
0.8734 High Similarity NPC243891
0.8726 High Similarity NPC283839
0.8726 High Similarity NPC90896
0.8726 High Similarity NPC478242
0.8721 High Similarity NPC473554
0.8721 High Similarity NPC295625
0.8721 High Similarity NPC33083
0.8721 High Similarity NPC470719
0.872 High Similarity NPC227297
0.8712 High Similarity NPC149873
0.8712 High Similarity NPC7191
0.871 High Similarity NPC476864
0.871 High Similarity NPC476866
0.871 High Similarity NPC476868
0.871 High Similarity NPC476869
0.8704 High Similarity NPC160780
0.8704 High Similarity NPC289811
0.8701 High Similarity NPC96795
0.8701 High Similarity NPC298257
0.8701 High Similarity NPC476378
0.8701 High Similarity NPC247032
0.8701 High Similarity NPC476384
0.8701 High Similarity NPC119537
0.8701 High Similarity NPC76406
0.8701 High Similarity NPC476375
0.8701 High Similarity NPC476380
0.8701 High Similarity NPC112
0.8701 High Similarity NPC476381
0.8701 High Similarity NPC269141
0.8701 High Similarity NPC264632
0.8701 High Similarity NPC476397
0.8701 High Similarity NPC175214
0.8701 High Similarity NPC205864
0.8696 High Similarity NPC11411
0.869 High Similarity NPC163165
0.8688 High Similarity NPC469888
0.8679 High Similarity NPC267091
0.8663 High Similarity NPC470713
0.8663 High Similarity NPC470717
0.8663 High Similarity NPC21359
0.8663 High Similarity NPC275977
0.8663 High Similarity NPC460984
0.8663 High Similarity NPC25946
0.8663 High Similarity NPC470720
0.8663 High Similarity NPC223860
0.8663 High Similarity NPC249560
0.8659 High Similarity NPC4013
0.8659 High Similarity NPC90905
0.865 High Similarity NPC239966
0.865 High Similarity NPC203020
0.8645 High Similarity NPC196063
0.8645 High Similarity NPC300894
0.8645 High Similarity NPC296954
0.8645 High Similarity NPC471028
0.8645 High Similarity NPC476867
0.8645 High Similarity NPC141455
0.8642 High Similarity NPC172419
0.8642 High Similarity NPC187205
0.8642 High Similarity NPC238419
0.8642 High Similarity NPC1913
0.8639 High Similarity NPC198199
0.8639 High Similarity NPC169645
0.8639 High Similarity NPC84482
0.8636 High Similarity NPC140502
0.8636 High Similarity NPC222433
0.8636 High Similarity NPC265648
0.8625 High Similarity NPC61604
0.8625 High Similarity NPC44260
0.8625 High Similarity NPC44730
0.8625 High Similarity NPC61152
0.8625 High Similarity NPC245615
0.8625 High Similarity NPC299706
0.8625 High Similarity NPC137813
0.8625 High Similarity NPC115466
0.8625 High Similarity NPC3746
0.8625 High Similarity NPC16024
0.8625 High Similarity NPC205037
0.8605 High Similarity NPC241781
0.8605 High Similarity NPC162394
0.8605 High Similarity NPC470718
0.8605 High Similarity NPC156785
0.8598 High Similarity NPC472859
0.8598 High Similarity NPC311803
0.8598 High Similarity NPC25389
0.8596 High Similarity NPC161609
0.8596 High Similarity NPC275690
0.8596 High Similarity NPC471030
0.8589 High Similarity NPC478269
0.8589 High Similarity NPC318826
0.8589 High Similarity NPC104222
0.8589 High Similarity NPC114791
0.8589 High Similarity NPC210501
0.8589 High Similarity NPC141331
0.8588 High Similarity NPC79736
0.8588 High Similarity NPC472723
0.8588 High Similarity NPC469397
0.8588 High Similarity NPC67629
0.8581 High Similarity NPC478239
0.8581 High Similarity NPC105005
0.858 High Similarity NPC472993
0.858 High Similarity NPC172033
0.858 High Similarity NPC88560
0.858 High Similarity NPC247629
0.858 High Similarity NPC175230
0.858 High Similarity NPC239019
0.8571 High Similarity NPC476385
0.8571 High Similarity NPC476377
0.8571 High Similarity NPC47471
0.8571 High Similarity NPC134405

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC246024 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.858 High Similarity NPD7685 Pre-registration
0.8462 Intermediate Similarity NPD7472 Approved
0.8462 Intermediate Similarity NPD7074 Phase 3
0.8442 Intermediate Similarity NPD7266 Discontinued
0.8402 Intermediate Similarity NPD7054 Approved
0.8343 Intermediate Similarity NPD7228 Approved
0.8314 Intermediate Similarity NPD7808 Phase 3
0.8256 Intermediate Similarity NPD7251 Discontinued
0.8239 Intermediate Similarity NPD6143 Clinical (unspecified phase)
0.8198 Intermediate Similarity NPD6797 Phase 2
0.8133 Intermediate Similarity NPD4868 Clinical (unspecified phase)
0.8129 Intermediate Similarity NPD3818 Discontinued
0.8121 Intermediate Similarity NPD8455 Phase 2
0.8092 Intermediate Similarity NPD7993 Clinical (unspecified phase)
0.8086 Intermediate Similarity NPD6980 Clinical (unspecified phase)
0.8068 Intermediate Similarity NPD8055 Clinical (unspecified phase)
0.8057 Intermediate Similarity NPD8313 Approved
0.8057 Intermediate Similarity NPD8312 Approved
0.8012 Intermediate Similarity NPD6166 Phase 2
0.8012 Intermediate Similarity NPD6168 Clinical (unspecified phase)
0.8012 Intermediate Similarity NPD6167 Clinical (unspecified phase)
0.8 Intermediate Similarity NPD4338 Clinical (unspecified phase)
0.7943 Intermediate Similarity NPD7240 Approved
0.7933 Intermediate Similarity NPD8397 Clinical (unspecified phase)
0.7929 Intermediate Similarity NPD6234 Discontinued
0.7844 Intermediate Similarity NPD37 Approved
0.7841 Intermediate Similarity NPD6559 Discontinued
0.7818 Intermediate Similarity NPD1653 Approved
0.7811 Intermediate Similarity NPD4966 Approved
0.7811 Intermediate Similarity NPD4965 Approved
0.7811 Intermediate Similarity NPD4967 Phase 2
0.7778 Intermediate Similarity NPD6190 Approved
0.7771 Intermediate Similarity NPD7804 Clinical (unspecified phase)
0.7765 Intermediate Similarity NPD4381 Clinical (unspecified phase)
0.767 Intermediate Similarity NPD5844 Phase 1
0.765 Intermediate Similarity NPD7879 Clinical (unspecified phase)
0.7633 Intermediate Similarity NPD1934 Approved
0.763 Intermediate Similarity NPD7199 Phase 2
0.7619 Intermediate Similarity NPD7680 Approved
0.75 Intermediate Similarity NPD3882 Suspended
0.75 Intermediate Similarity NPD4628 Phase 3
0.75 Intermediate Similarity NPD7237 Clinical (unspecified phase)
0.7485 Intermediate Similarity NPD2393 Clinical (unspecified phase)
0.7485 Intermediate Similarity NPD1465 Phase 2
0.7443 Intermediate Similarity NPD7184 Clinical (unspecified phase)
0.7442 Intermediate Similarity NPD3817 Phase 2
0.7438 Intermediate Similarity NPD230 Phase 1
0.7429 Intermediate Similarity NPD8127 Discontinued
0.7423 Intermediate Similarity NPD8151 Discontinued
0.7412 Intermediate Similarity NPD4380 Phase 2
0.7386 Intermediate Similarity NPD6232 Discontinued
0.7384 Intermediate Similarity NPD2801 Approved
0.736 Intermediate Similarity NPD7473 Discontinued
0.7356 Intermediate Similarity NPD7075 Discontinued
0.7355 Intermediate Similarity NPD4379 Clinical (unspecified phase)
0.7353 Intermediate Similarity NPD7458 Discontinued
0.7347 Intermediate Similarity NPD7783 Phase 2
0.7347 Intermediate Similarity NPD7782 Clinical (unspecified phase)
0.7329 Intermediate Similarity NPD1933 Approved
0.7296 Intermediate Similarity NPD3027 Phase 3
0.7289 Intermediate Similarity NPD8166 Discontinued
0.7278 Intermediate Similarity NPD9494 Approved
0.7273 Intermediate Similarity NPD5494 Approved
0.7253 Intermediate Similarity NPD7039 Approved
0.7253 Intermediate Similarity NPD7038 Approved
0.725 Intermediate Similarity NPD3764 Approved
0.7241 Intermediate Similarity NPD5402 Approved
0.7229 Intermediate Similarity NPD7421 Clinical (unspecified phase)
0.7205 Intermediate Similarity NPD6233 Phase 2
0.72 Intermediate Similarity NPD7768 Phase 2
0.7184 Intermediate Similarity NPD7096 Clinical (unspecified phase)
0.7184 Intermediate Similarity NPD7819 Suspended
0.7168 Intermediate Similarity NPD6385 Approved
0.7168 Intermediate Similarity NPD7411 Suspended
0.7168 Intermediate Similarity NPD6386 Approved
0.7165 Intermediate Similarity NPD7435 Discontinued
0.716 Intermediate Similarity NPD1511 Approved
0.7152 Intermediate Similarity NPD2935 Discontinued
0.7143 Intermediate Similarity NPD8443 Clinical (unspecified phase)
0.7135 Intermediate Similarity NPD7090 Clinical (unspecified phase)
0.7135 Intermediate Similarity NPD5403 Approved
0.7126 Intermediate Similarity NPD6674 Discontinued
0.7118 Intermediate Similarity NPD7004 Clinical (unspecified phase)
0.7117 Intermediate Similarity NPD447 Suspended
0.7111 Intermediate Similarity NPD7852 Clinical (unspecified phase)
0.7077 Intermediate Similarity NPD7697 Approved
0.7077 Intermediate Similarity NPD7698 Approved
0.7077 Intermediate Similarity NPD7696 Phase 3
0.7076 Intermediate Similarity NPD1512 Approved
0.7076 Intermediate Similarity NPD6273 Approved
0.7059 Intermediate Similarity NPD8434 Phase 2
0.7055 Intermediate Similarity NPD1613 Approved
0.7055 Intermediate Similarity NPD1612 Clinical (unspecified phase)
0.7052 Intermediate Similarity NPD3455 Phase 2
0.7052 Intermediate Similarity NPD5808 Clinical (unspecified phase)
0.7045 Intermediate Similarity NPD5353 Approved
0.7041 Intermediate Similarity NPD8319 Approved
0.7041 Intermediate Similarity NPD7871 Phase 2
0.7041 Intermediate Similarity NPD7870 Phase 2
0.7041 Intermediate Similarity NPD8320 Phase 1
0.7039 Intermediate Similarity NPD6959 Discontinued
0.7037 Intermediate Similarity NPD6798 Discontinued
0.7035 Intermediate Similarity NPD7875 Clinical (unspecified phase)
0.7035 Intermediate Similarity NPD7874 Approved
0.7033 Intermediate Similarity NPD3751 Discontinued
0.7032 Intermediate Similarity NPD1357 Approved
0.703 Intermediate Similarity NPD7097 Phase 1
0.7029 Intermediate Similarity NPD6801 Discontinued
0.7026 Intermediate Similarity NPD6823 Phase 2
0.702 Intermediate Similarity NPD7701 Phase 2
0.7018 Intermediate Similarity NPD5401 Approved
0.701 Intermediate Similarity NPD6780 Approved
0.701 Intermediate Similarity NPD6779 Approved
0.701 Intermediate Similarity NPD6782 Approved
0.701 Intermediate Similarity NPD6781 Approved
0.701 Intermediate Similarity NPD6778 Approved
0.701 Intermediate Similarity NPD6777 Approved
0.701 Intermediate Similarity NPD6776 Approved
0.7006 Intermediate Similarity NPD3705 Approved
0.6982 Remote Similarity NPD3750 Approved
0.6982 Remote Similarity NPD1878 Clinical (unspecified phase)
0.6968 Remote Similarity NPD9545 Approved
0.6968 Remote Similarity NPD8150 Discontinued
0.6959 Remote Similarity NPD6799 Approved
0.6919 Remote Similarity NPD7999 Approved
0.6914 Remote Similarity NPD7028 Phase 2
0.6909 Remote Similarity NPD6355 Discontinued
0.6907 Remote Similarity NPD7700 Phase 2
0.6907 Remote Similarity NPD7699 Phase 2
0.6906 Remote Similarity NPD3787 Discontinued
0.6903 Remote Similarity NPD5536 Phase 2
0.6901 Remote Similarity NPD7440 Discontinued
0.6899 Remote Similarity NPD1091 Approved
0.6882 Remote Similarity NPD7003 Approved
0.6882 Remote Similarity NPD4109 Clinical (unspecified phase)
0.6882 Remote Similarity NPD4110 Phase 3
0.6872 Remote Similarity NPD3749 Approved
0.6864 Remote Similarity NPD1549 Phase 2
0.6845 Remote Similarity NPD1551 Phase 2
0.6832 Remote Similarity NPD7801 Approved
0.6829 Remote Similarity NPD6859 Clinical (unspecified phase)
0.6821 Remote Similarity NPD7410 Clinical (unspecified phase)
0.6814 Remote Similarity NPD7930 Approved
0.681 Remote Similarity NPD6832 Phase 2
0.681 Remote Similarity NPD1529 Clinical (unspecified phase)
0.6805 Remote Similarity NPD1552 Clinical (unspecified phase)
0.6805 Remote Similarity NPD1550 Clinical (unspecified phase)
0.6798 Remote Similarity NPD2978 Approved
0.6798 Remote Similarity NPD2977 Approved
0.6794 Remote Similarity NPD5619 Clinical (unspecified phase)
0.6786 Remote Similarity NPD1510 Phase 2
0.6779 Remote Similarity NPD8155 Clinical (unspecified phase)
0.6776 Remote Similarity NPD5242 Approved
0.6768 Remote Similarity NPD5952 Clinical (unspecified phase)
0.6768 Remote Similarity NPD7095 Approved
0.6766 Remote Similarity NPD6653 Approved
0.6766 Remote Similarity NPD7585 Approved
0.6765 Remote Similarity NPD970 Clinical (unspecified phase)
0.6761 Remote Similarity NPD3226 Approved
0.6753 Remote Similarity NPD6535 Approved
0.6753 Remote Similarity NPD6534 Approved
0.675 Remote Similarity NPD9269 Phase 2
0.6748 Remote Similarity NPD1530 Clinical (unspecified phase)
0.6742 Remote Similarity NPD7945 Clinical (unspecified phase)
0.674 Remote Similarity NPD919 Approved
0.6735 Remote Similarity NPD4420 Approved
0.6728 Remote Similarity NPD1203 Approved
0.6724 Remote Similarity NPD2533 Approved
0.6724 Remote Similarity NPD4378 Clinical (unspecified phase)
0.6724 Remote Similarity NPD7422 Clinical (unspecified phase)
0.6724 Remote Similarity NPD2534 Approved
0.6724 Remote Similarity NPD2532 Approved
0.6723 Remote Similarity NPD6599 Discontinued
0.6716 Remote Similarity NPD7583 Approved
0.6707 Remote Similarity NPD1899 Clinical (unspecified phase)
0.6705 Remote Similarity NPD5058 Phase 3
0.6704 Remote Similarity NPD1006 Clinical (unspecified phase)
0.6687 Remote Similarity NPD4062 Phase 3
0.6686 Remote Similarity NPD6398 Clinical (unspecified phase)
0.6686 Remote Similarity NPD3748 Approved
0.6686 Remote Similarity NPD7033 Discontinued
0.6685 Remote Similarity NPD3926 Phase 2
0.6685 Remote Similarity NPD6971 Discontinued
0.6684 Remote Similarity NPD8090 Clinical (unspecified phase)
0.6667 Remote Similarity NPD7799 Discontinued
0.6667 Remote Similarity NPD4357 Discontinued
0.6667 Remote Similarity NPD7549 Discontinued
0.6647 Remote Similarity NPD3619 Clinical (unspecified phase)
0.6647 Remote Similarity NPD1240 Approved
0.6647 Remote Similarity NPD3620 Phase 2
0.6647 Remote Similarity NPD2796 Approved
0.6647 Remote Similarity NPD2438 Suspended
0.6646 Remote Similarity NPD1608 Approved
0.6634 Remote Similarity NPD7584 Approved
0.6631 Remote Similarity NPD8470 Clinical (unspecified phase)
0.6623 Remote Similarity NPD228 Approved
0.6615 Remote Similarity NPD6214 Clinical (unspecified phase)
0.6615 Remote Similarity NPD6213 Phase 3
0.6615 Remote Similarity NPD6212 Phase 3
0.6608 Remote Similarity NPD2346 Discontinued

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data