Structure

Physi-Chem Properties

Molecular Weight:  574.24
Volume:  551.051
LogP:  1.397
LogD:  0.439
LogS:  -3.932
# Rotatable Bonds:  5
TPSA:  165.26
# H-Bond Aceptor:  11
# H-Bond Donor:  3
# Rings:  7
# Heavy Atoms:  11

MedChem Properties

QED Drug-Likeness Score:  0.354
Synthetic Accessibility Score:  7.047
Fsp3:  0.767
Lipinski Rule-of-5:  Rejected
Pfizer Rule:  Accepted
GSK Rule:  Rejected
BMS Rule:  0
Golden Triangle Rule:  Rejected
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -5.457
MDCK Permeability:  4.995004928787239e-05
Pgp-inhibitor:  0.045
Pgp-substrate:  0.999
Human Intestinal Absorption (HIA):  0.02
20% Bioavailability (F20%):  0.145
30% Bioavailability (F30%):  0.987

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.092
Plasma Protein Binding (PPB):  59.44413757324219%
Volume Distribution (VD):  1.035
Pgp-substrate:  32.79754638671875%

ADMET: Metabolism

CYP1A2-inhibitor:  0.003
CYP1A2-substrate:  0.094
CYP2C19-inhibitor:  0.007
CYP2C19-substrate:  0.173
CYP2C9-inhibitor:  0.032
CYP2C9-substrate:  0.014
CYP2D6-inhibitor:  0.024
CYP2D6-substrate:  0.083
CYP3A4-inhibitor:  0.307
CYP3A4-substrate:  0.313

ADMET: Excretion

Clearance (CL):  2.563
Half-life (T1/2):  0.718

ADMET: Toxicity

hERG Blockers:  0.392
Human Hepatotoxicity (H-HT):  0.565
Drug-inuced Liver Injury (DILI):  0.479
AMES Toxicity:  0.538
Rat Oral Acute Toxicity:  0.978
Maximum Recommended Daily Dose:  0.968
Skin Sensitization:  0.249
Carcinogencity:  0.045
Eye Corrosion:  0.005
Eye Irritation:  0.021
Respiratory Toxicity:  0.986

Download Data

Data Type Select
General Info & Identifiers & Properties  
Structure MOL file  
Source Organisms  
Biological Activities  
Similar NPs/Drugs  

  Natural Product: NPC242334

Natural Product ID:  NPC242334
Common Name*:   Toosendanin
IUPAC Name:   n.a.
Synonyms:   Toosendanin
Standard InCHIKey:  NAHTXVIXCMUDLF-RFNFAWMESA-N
Standard InCHI:  InChI=1S/C30H38O11/c1-13(31)39-20-10-19(34)29-12-38-25(36)26(20,3)17(29)9-18(33)28(5)23(29)22(35)24(40-14(2)32)27(4)16(15-6-7-37-11-15)8-21-30(27,28)41-21/h6-7,11,16-21,23-25,33-34,36H,8-10,12H2,1-5H3/t16-,17-,18+,19-,20+,21+,23-,24-,25+,26+,27+,28+,29+,30+/m0/s1
SMILES:  CC(=O)O[C@@H]1C[C@@H]([C@@]23CO[C@H]([C@]1(C)[C@@H]2C[C@H]([C@]1(C)[C@@H]3C(=O)[C@@H]([C@@]2(C)[C@@H](C[C@@H]3[C@]12O3)c1ccoc1)OC(=O)C)O)O)O
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL503044
PubChem CID:   9851101
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000012] Lipids and lipid-like molecules
      • [CHEMONTID:0000259] Prenol lipids
        • [CHEMONTID:0001553] Triterpenoids
          • [CHEMONTID:0002380] Limonoids

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO32938 cedrela spp. Species Meliaceae Eukaryota n.a. n.a. n.a. PMID[10820113]
NPO18932 Melia azedarach Species Meliaceae Eukaryota n.a. Brazilian n.a. PMID[15387656]
NPO18932 Melia azedarach Species Meliaceae Eukaryota n.a. ripe fruit n.a. PMID[16205005]
NPO26542 Rubia cordifolia Species Rubiaceae Eukaryota n.a. n.a. n.a. PMID[18078747]
NPO18932 Melia azedarach Species Meliaceae Eukaryota Fruits n.a. n.a. PMID[33253570]
NPO18932 Melia azedarach Species Meliaceae Eukaryota Seeds n.a. n.a. PMID[3701342]
NPO26542 Rubia cordifolia Species Rubiaceae Eukaryota n.a. n.a. n.a. PMID[8882438]
NPO26542 Rubia cordifolia Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO18932 Melia azedarach Species Meliaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO18932.1 Melia azedarach var. toosendan Varieties Meliaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO26542 Rubia cordifolia Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO18932 Melia azedarach Species Meliaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO18932 Melia azedarach Species Meliaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO26542 Rubia cordifolia Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO18932 Melia azedarach Species Meliaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO26542 Rubia cordifolia Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO18932.1 Melia azedarach var. toosendan Varieties Meliaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO18932.1 Melia azedarach var. toosendan Varieties Meliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18932 Melia azedarach Species Meliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26542 Rubia cordifolia Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT32 Organism Mus musculus Mus musculus Activity = 7.1 hr PMID[450666]
NPT1769 Organism Mythimna separata Mythimna separata Activity = 24.1 % PMID[450668]
NPT1769 Organism Mythimna separata Mythimna separata Activity = 30.8 % PMID[450668]
NPT1769 Organism Mythimna separata Mythimna separata Activity = 50.0 % PMID[450668]
NPT1769 Organism Mythimna separata Mythimna separata mortality = 48.1 % PMID[450669]
NPT1769 Organism Mythimna separata Mythimna separata mortality = 33.3 % PMID[450669]
NPT1769 Organism Mythimna separata Mythimna separata mortality = 27.6 % PMID[450669]
NPT1769 Organism Mythimna separata Mythimna separata mortality = 40.7 % PMID[450670]
NPT1769 Organism Mythimna separata Mythimna separata mortality = 35.7 % PMID[450670]
NPT1769 Organism Mythimna separata Mythimna separata mortality = 21.4 % PMID[450670]
NPT1769 Organism Mythimna separata Mythimna separata mortality = 44.8 % PMID[450671]
NPT1769 Organism Mythimna separata Mythimna separata mortality = 13.8 % PMID[450671]
NPT1769 Organism Mythimna separata Mythimna separata mortality = 6.7 % PMID[450671]
NPT1419 Organism Tribolium castaneum Tribolium castaneum EC50 = 94.3 ppm PMID[450672]
NPT1769 Organism Mythimna separata Mythimna separata AFI = 97.5 % PMID[450673]
NPT176 Organism Artemia salina Artemia salina LC50 < 1.0 ug.mL-1 PMID[450673]
NPT1769 Organism Mythimna separata Mythimna separata mortality = 50.0 % PMID[450674]
NPT1769 Organism Mythimna separata Mythimna separata mortality = 31.0 % PMID[450674]
NPT1769 Organism Mythimna separata Mythimna separata mortality = 30.0 % PMID[450674]
NPT1769 Organism Mythimna separata Mythimna separata mortality = 48.0 % PMID[450675]
NPT1769 Organism Mythimna separata Mythimna separata mortality = 34.6 % PMID[450675]
NPT1769 Organism Mythimna separata Mythimna separata mortality = 17.9 % PMID[450675]
NPT1769 Organism Mythimna separata Mythimna separata mortality = 24.1 % PMID[450676]
NPT1769 Organism Mythimna separata Mythimna separata mortality = 53.8 % PMID[450676]
NPT1769 Organism Mythimna separata Mythimna separata mortality = 33.3 % PMID[450676]
NPT1769 Organism Mythimna separata Mythimna separata mortality = 46.4 % PMID[450677]
NPT1769 Organism Mythimna separata Mythimna separata mortality = 34.5 % PMID[450677]
NPT1769 Organism Mythimna separata Mythimna separata mortality = 30.0 % PMID[450677]
NPT3062 Organism Spodoptera eridania Spodoptera eridania AFI = 45.8 % PMID[450678]
NPT3062 Organism Spodoptera eridania Spodoptera eridania AFI = 58.7 % PMID[450678]
NPT3062 Organism Spodoptera eridania Spodoptera eridania AFI = 65.1 % PMID[450678]
NPT3062 Organism Spodoptera eridania Spodoptera eridania AFI = 71.8 % PMID[450678]
NPT3062 Organism Spodoptera eridania Spodoptera eridania AFI = 79.3 % PMID[450678]
NPT3062 Organism Spodoptera eridania Spodoptera eridania AFI = 87.8 % PMID[450678]
NPT1643 Organism Epilachna Epilachna AFI = 54.8 % PMID[450678]
NPT1643 Organism Epilachna Epilachna AFI = 78.2 % PMID[450678]
NPT1643 Organism Epilachna Epilachna AFI = 90.7 % PMID[450678]
NPT1643 Organism Epilachna Epilachna ED50 = 3.69 microg/cm2 PMID[450679]
NPT1419 Organism Tribolium castaneum Tribolium castaneum EC50 = 66.0 ppm PMID[450680]
NPT1175 Organism Spodoptera litura Spodoptera litura mortality = 100.0 % PMID[450681]
NPT4696 Organism Brontispa longissima Brontispa longissima mortality = 73.33 % PMID[450681]
NPT4696 Organism Brontispa longissima Brontispa longissima mortality = 66.67 % PMID[450681]
NPT4696 Organism Brontispa longissima Brontispa longissima mortality = 60.0 % PMID[450681]
NPT4696 Organism Brontispa longissima Brontispa longissima mortality = 53.33 % PMID[450681]
NPT4696 Organism Brontispa longissima Brontispa longissima mortality = 83.33 % PMID[450681]
NPT4696 Organism Brontispa longissima Brontispa longissima mortality = 63.33 % PMID[450681]
NPT4696 Organism Brontispa longissima Brontispa longissima mortality = 100.0 % PMID[450681]
NPT4696 Organism Brontispa longissima Brontispa longissima mortality = 96.67 % PMID[450681]
NPT1175 Organism Spodoptera litura Spodoptera litura Activity = 90.6 % PMID[450681]
NPT1175 Organism Spodoptera litura Spodoptera litura Activity = 87.1 % PMID[450681]
NPT1643 Organism Epilachna Epilachna ED50 = 3.69 ug PMID[450682]
NPT1419 Organism Tribolium castaneum Tribolium castaneum EC50 = 48.0 ppm PMID[450683]
NPT1419 Organism Tribolium castaneum Tribolium castaneum EC50 = 66.0 ppm PMID[450683]
NPT780 Organism Sitophilus zeamais Sitophilus zeamais EC50 = 100.0 ppm PMID[450683]
NPT1769 Organism Mythimna separata Mythimna separata mortality = 51.7 % PMID[450684]
NPT1769 Organism Mythimna separata Mythimna separata mortality = 27.6 % PMID[450684]
NPT1769 Organism Mythimna separata Mythimna separata mortality = 10.0 % PMID[450684]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda Activity = 0.0 % PMID[450685]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda Activity = 4.17 % PMID[450685]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda Activity = 16.7 % PMID[450685]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda TIME = 864.0 hr PMID[450685]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda Activity = 17.9 % PMID[450685]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda Activity = 38.0 mg PMID[450685]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda Activity = 45.1 mg PMID[450685]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda Activity = 95.0 mg PMID[450685]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda TIME = 576.0 hr PMID[450685]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda TIME = 564.0 hr PMID[450685]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda Activity = 2.8 mm PMID[450685]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda Activity = 6.1 mm PMID[450685]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda Activity = 7.0 mm PMID[450685]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda Activity = 11.2 mg PMID[450685]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda Activity = 17.0 mg PMID[450685]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda Activity = 21.5 mg PMID[450685]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda LC50 = 7.0 ppm PMID[450685]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda mortality = 89.0 % PMID[450685]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda mortality = 70.0 % PMID[450685]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda mortality = 40.0 % PMID[450685]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda Activity = 0.57 cm PMID[450685]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda Activity = 0.77 cm PMID[450685]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda Activity = 0.98 cm PMID[450685]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda Activity = 1.0 mg PMID[450685]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda Activity = 2.3 mg PMID[450685]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda Activity = 5.1 mg PMID[450685]
NPT1769 Organism Mythimna separata Mythimna separata mortality = 20.0 % PMID[450686]
NPT1769 Organism Mythimna separata Mythimna separata mortality = 10.0 % PMID[450686]
NPT1769 Organism Mythimna separata Mythimna separata mortality = 50.0 % PMID[450686]
NPT176 Organism Artemia salina Artemia salina LC50 < 1.0 ug.mL-1 PMID[450687]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC242334 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.8841 High Similarity NPC259943
0.8834 High Similarity NPC117986
0.8834 High Similarity NPC290400
0.8834 High Similarity NPC96443
0.878 High Similarity NPC39986
0.878 High Similarity NPC302369
0.878 High Similarity NPC134254
0.8779 High Similarity NPC105395
0.8743 High Similarity NPC472650
0.872 High Similarity NPC5741
0.869 High Similarity NPC159232
0.8683 High Similarity NPC271235
0.8675 High Similarity NPC478178
0.8675 High Similarity NPC214600
0.8671 High Similarity NPC242068
0.8671 High Similarity NPC247563
0.8659 High Similarity NPC335761
0.8631 High Similarity NPC470995
0.8606 High Similarity NPC197596
0.8606 High Similarity NPC5079
0.858 High Similarity NPC160818
0.858 High Similarity NPC169299
0.8554 High Similarity NPC51568
0.8554 High Similarity NPC165218
0.8554 High Similarity NPC234660
0.8537 High Similarity NPC249021
0.8529 High Similarity NPC469848
0.8528 High Similarity NPC471175
0.8521 High Similarity NPC82602
0.8519 High Similarity NPC84063
0.8512 High Similarity NPC476850
0.8512 High Similarity NPC472282
0.8512 High Similarity NPC478179
0.8512 High Similarity NPC476861
0.8503 High Similarity NPC123088
0.8503 High Similarity NPC476858
0.8503 High Similarity NPC476857
0.8503 High Similarity NPC476856
0.8497 Intermediate Similarity NPC470938
0.8494 Intermediate Similarity NPC472767
0.8494 Intermediate Similarity NPC470939
0.8488 Intermediate Similarity NPC470181
0.848 Intermediate Similarity NPC236004
0.8476 Intermediate Similarity NPC471169
0.8476 Intermediate Similarity NPC107646
0.8476 Intermediate Similarity NPC175964
0.8462 Intermediate Similarity NPC160651
0.8462 Intermediate Similarity NPC472673
0.8462 Intermediate Similarity NPC471397
0.8452 Intermediate Similarity NPC149945
0.8443 Intermediate Similarity NPC469846
0.8438 Intermediate Similarity NPC216755
0.8434 Intermediate Similarity NPC475381
0.8434 Intermediate Similarity NPC25255
0.8434 Intermediate Similarity NPC472653
0.843 Intermediate Similarity NPC262386
0.8424 Intermediate Similarity NPC286722
0.8412 Intermediate Similarity NPC472659
0.8405 Intermediate Similarity NPC469503
0.8402 Intermediate Similarity NPC472651
0.8402 Intermediate Similarity NPC173516
0.8402 Intermediate Similarity NPC476853
0.8383 Intermediate Similarity NPC82851
0.8383 Intermediate Similarity NPC6326
0.8383 Intermediate Similarity NPC207978
0.8383 Intermediate Similarity NPC193798
0.8383 Intermediate Similarity NPC472668
0.8382 Intermediate Similarity NPC478177
0.8373 Intermediate Similarity NPC475295
0.8373 Intermediate Similarity NPC473473
0.8373 Intermediate Similarity NPC474932
0.8372 Intermediate Similarity NPC471437
0.8372 Intermediate Similarity NPC94763
0.8364 Intermediate Similarity NPC209364
0.8363 Intermediate Similarity NPC285227
0.8354 Intermediate Similarity NPC282445
0.8353 Intermediate Similarity NPC472652
0.8343 Intermediate Similarity NPC97574
0.8343 Intermediate Similarity NPC93172
0.8343 Intermediate Similarity NPC23387
0.8333 Intermediate Similarity NPC472139
0.8333 Intermediate Similarity NPC224394
0.8333 Intermediate Similarity NPC472654
0.8333 Intermediate Similarity NPC477405
0.8333 Intermediate Similarity NPC663
0.8333 Intermediate Similarity NPC472669
0.8324 Intermediate Similarity NPC167340
0.8323 Intermediate Similarity NPC471174
0.8313 Intermediate Similarity NPC472772
0.8303 Intermediate Similarity NPC35000
0.8303 Intermediate Similarity NPC469336
0.8302 Intermediate Similarity NPC243577
0.8294 Intermediate Similarity NPC472764
0.8293 Intermediate Similarity NPC472672
0.8293 Intermediate Similarity NPC246164
0.8284 Intermediate Similarity NPC476860
0.8284 Intermediate Similarity NPC276551
0.8284 Intermediate Similarity NPC271657
0.8274 Intermediate Similarity NPC211777
0.8274 Intermediate Similarity NPC471166
0.8274 Intermediate Similarity NPC471167
0.8274 Intermediate Similarity NPC263432
0.8274 Intermediate Similarity NPC470792
0.8274 Intermediate Similarity NPC69028
0.8266 Intermediate Similarity NPC471632
0.8266 Intermediate Similarity NPC477824
0.8263 Intermediate Similarity NPC475967
0.8253 Intermediate Similarity NPC204663
0.8253 Intermediate Similarity NPC41880
0.8253 Intermediate Similarity NPC126723
0.8249 Intermediate Similarity NPC186746
0.8246 Intermediate Similarity NPC472766
0.8246 Intermediate Similarity NPC472765
0.8246 Intermediate Similarity NPC327922
0.8242 Intermediate Similarity NPC30222
0.8242 Intermediate Similarity NPC178932
0.8242 Intermediate Similarity NPC253201
0.8242 Intermediate Similarity NPC302054
0.8242 Intermediate Similarity NPC57998
0.8235 Intermediate Similarity NPC472670
0.8235 Intermediate Similarity NPC470875
0.8235 Intermediate Similarity NPC307781
0.8232 Intermediate Similarity NPC272590
0.8225 Intermediate Similarity NPC292389
0.8225 Intermediate Similarity NPC471168
0.8225 Intermediate Similarity NPC419
0.8225 Intermediate Similarity NPC198047
0.8225 Intermediate Similarity NPC469338
0.8214 Intermediate Similarity NPC305016
0.8214 Intermediate Similarity NPC470789
0.8204 Intermediate Similarity NPC187149
0.8204 Intermediate Similarity NPC195131
0.8204 Intermediate Similarity NPC304692
0.8204 Intermediate Similarity NPC299038
0.8193 Intermediate Similarity NPC469850
0.8193 Intermediate Similarity NPC92979
0.8187 Intermediate Similarity NPC476224
0.8187 Intermediate Similarity NPC472774
0.8187 Intermediate Similarity NPC472775
0.8187 Intermediate Similarity NPC100333
0.8182 Intermediate Similarity NPC476940
0.8182 Intermediate Similarity NPC75906
0.8182 Intermediate Similarity NPC268905
0.8182 Intermediate Similarity NPC476939
0.8176 Intermediate Similarity NPC470940
0.8176 Intermediate Similarity NPC469849
0.8176 Intermediate Similarity NPC470182
0.8171 Intermediate Similarity NPC476122
0.8171 Intermediate Similarity NPC212257
0.8171 Intermediate Similarity NPC156189
0.8171 Intermediate Similarity NPC470997
0.8166 Intermediate Similarity NPC200782
0.8166 Intermediate Similarity NPC472771
0.8166 Intermediate Similarity NPC18347
0.8166 Intermediate Similarity NPC149896
0.8161 Intermediate Similarity NPC469576
0.8155 Intermediate Similarity NPC477403
0.8155 Intermediate Similarity NPC237155
0.8155 Intermediate Similarity NPC262872
0.8155 Intermediate Similarity NPC475226
0.8155 Intermediate Similarity NPC307383
0.8155 Intermediate Similarity NPC474611
0.8144 Intermediate Similarity NPC60973
0.8144 Intermediate Similarity NPC104736
0.8137 Intermediate Similarity NPC251865
0.8133 Intermediate Similarity NPC98206
0.8133 Intermediate Similarity NPC237259
0.8133 Intermediate Similarity NPC34421
0.8125 Intermediate Similarity NPC121158
0.8118 Intermediate Similarity NPC472773
0.8118 Intermediate Similarity NPC476197
0.8114 Intermediate Similarity NPC469633
0.811 Intermediate Similarity NPC125182
0.811 Intermediate Similarity NPC69647
0.8107 Intermediate Similarity NPC477402
0.8098 Intermediate Similarity NPC221809
0.8098 Intermediate Similarity NPC255414
0.8095 Intermediate Similarity NPC45101
0.8095 Intermediate Similarity NPC36655
0.8095 Intermediate Similarity NPC195954
0.8095 Intermediate Similarity NPC470118
0.8095 Intermediate Similarity NPC470119
0.8095 Intermediate Similarity NPC214495
0.8095 Intermediate Similarity NPC475066
0.8095 Intermediate Similarity NPC88007
0.8095 Intermediate Similarity NPC472283
0.8095 Intermediate Similarity NPC261597
0.8095 Intermediate Similarity NPC194499
0.8084 Intermediate Similarity NPC155939
0.8084 Intermediate Similarity NPC44675
0.8084 Intermediate Similarity NPC214541
0.8084 Intermediate Similarity NPC141538
0.8084 Intermediate Similarity NPC296807
0.8081 Intermediate Similarity NPC473753
0.8081 Intermediate Similarity NPC473766
0.8072 Intermediate Similarity NPC476201
0.8072 Intermediate Similarity NPC33938
0.807 Intermediate Similarity NPC146991
0.8061 Intermediate Similarity NPC469335
0.8061 Intermediate Similarity NPC477404

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC242334 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.8415 Intermediate Similarity NPD5761 Phase 2
0.8415 Intermediate Similarity NPD5760 Phase 2
0.7809 Intermediate Similarity NPD6764 Approved
0.7809 Intermediate Similarity NPD6765 Approved
0.7637 Intermediate Similarity NPD6784 Approved
0.7637 Intermediate Similarity NPD6785 Approved
0.7596 Intermediate Similarity NPD8434 Phase 2
0.759 Intermediate Similarity NPD7236 Approved
0.7584 Intermediate Similarity NPD7799 Discontinued
0.7471 Intermediate Similarity NPD7239 Suspended
0.7446 Intermediate Similarity NPD8055 Clinical (unspecified phase)
0.7418 Intermediate Similarity NPD7685 Pre-registration
0.7386 Intermediate Similarity NPD5537 Clinical (unspecified phase)
0.7353 Intermediate Similarity NPD6273 Approved
0.734 Intermediate Similarity NPD7879 Clinical (unspecified phase)
0.7111 Intermediate Similarity NPD8127 Discontinued
0.7093 Intermediate Similarity NPD7004 Clinical (unspecified phase)
0.7079 Intermediate Similarity NPD7058 Phase 2
0.7079 Intermediate Similarity NPD7057 Phase 3
0.7065 Intermediate Similarity NPD7804 Clinical (unspecified phase)
0.7062 Intermediate Similarity NPD7096 Clinical (unspecified phase)
0.7062 Intermediate Similarity NPD7819 Suspended
0.7059 Intermediate Similarity NPD8313 Approved
0.7059 Intermediate Similarity NPD8312 Approved
0.7043 Intermediate Similarity NPD6559 Discontinued
0.7039 Intermediate Similarity NPD7075 Discontinued
0.7033 Intermediate Similarity NPD7184 Clinical (unspecified phase)
0.697 Remote Similarity NPD7435 Discontinued
0.6959 Remote Similarity NPD4628 Phase 3
0.6944 Remote Similarity NPD4381 Clinical (unspecified phase)
0.6937 Remote Similarity NPD7507 Approved
0.6932 Remote Similarity NPD7458 Discontinued
0.6923 Remote Similarity NPD7199 Phase 2
0.6919 Remote Similarity NPD3751 Discontinued
0.6915 Remote Similarity NPD4338 Clinical (unspecified phase)
0.6914 Remote Similarity NPD7319 Approved
0.6893 Remote Similarity NPD6599 Discontinued
0.6885 Remote Similarity NPD3787 Discontinued
0.6884 Remote Similarity NPD7497 Discontinued
0.6882 Remote Similarity NPD5844 Phase 1
0.6882 Remote Similarity NPD5762 Approved
0.6882 Remote Similarity NPD5763 Approved
0.6862 Remote Similarity NPD7251 Discontinued
0.6854 Remote Similarity NPD7411 Suspended
0.6833 Remote Similarity NPD8443 Clinical (unspecified phase)
0.6828 Remote Similarity NPD7228 Approved
0.6825 Remote Similarity NPD7808 Phase 3
0.6816 Remote Similarity NPD6801 Discontinued
0.6812 Remote Similarity NPD8404 Phase 2
0.6809 Remote Similarity NPD6797 Phase 2
0.6802 Remote Similarity NPD7421 Clinical (unspecified phase)
0.6796 Remote Similarity NPD4868 Clinical (unspecified phase)
0.6796 Remote Similarity NPD4967 Phase 2
0.6796 Remote Similarity NPD4965 Approved
0.6796 Remote Similarity NPD4966 Approved
0.6778 Remote Similarity NPD8455 Phase 2
0.6765 Remote Similarity NPD7875 Clinical (unspecified phase)
0.6765 Remote Similarity NPD7874 Approved
0.6763 Remote Similarity NPD6398 Clinical (unspecified phase)
0.6758 Remote Similarity NPD3749 Approved
0.6755 Remote Similarity NPD7074 Phase 3
0.6742 Remote Similarity NPD5808 Clinical (unspecified phase)
0.6742 Remote Similarity NPD3226 Approved
0.674 Remote Similarity NPD5402 Approved
0.6738 Remote Similarity NPD3818 Discontinued
0.6734 Remote Similarity NPD6777 Approved
0.6734 Remote Similarity NPD6779 Approved
0.6734 Remote Similarity NPD6776 Approved
0.6734 Remote Similarity NPD6780 Approved
0.6734 Remote Similarity NPD6778 Approved
0.6734 Remote Similarity NPD6782 Approved
0.6734 Remote Similarity NPD6781 Approved
0.6726 Remote Similarity NPD4140 Approved
0.6722 Remote Similarity NPD37 Approved
0.672 Remote Similarity NPD7993 Clinical (unspecified phase)
0.6716 Remote Similarity NPD7696 Phase 3
0.6716 Remote Similarity NPD7697 Approved
0.6716 Remote Similarity NPD7698 Approved
0.6704 Remote Similarity NPD7028 Phase 2
0.6702 Remote Similarity NPD7054 Approved
0.6686 Remote Similarity NPD6002 Phase 3
0.6686 Remote Similarity NPD6006 Clinical (unspecified phase)
0.6686 Remote Similarity NPD2343 Clinical (unspecified phase)
0.6686 Remote Similarity NPD6003 Clinical (unspecified phase)
0.6686 Remote Similarity NPD6004 Phase 3
0.6686 Remote Similarity NPD6005 Phase 3
0.6684 Remote Similarity NPD7240 Approved
0.6683 Remote Similarity NPD8320 Phase 1
0.6683 Remote Similarity NPD8319 Approved
0.6683 Remote Similarity NPD7871 Phase 2
0.6683 Remote Similarity NPD7870 Phase 2
0.6667 Remote Similarity NPD7472 Approved
0.6649 Remote Similarity NPD6959 Discontinued
0.6648 Remote Similarity NPD3817 Phase 2
0.6648 Remote Similarity NPD6799 Approved
0.6631 Remote Similarity NPD6168 Clinical (unspecified phase)
0.6631 Remote Similarity NPD6166 Phase 2
0.6631 Remote Similarity NPD7852 Clinical (unspecified phase)
0.6631 Remote Similarity NPD6167 Clinical (unspecified phase)
0.663 Remote Similarity NPD6234 Discontinued
0.6629 Remote Similarity NPD5403 Approved
0.6628 Remote Similarity NPD6100 Approved
0.6628 Remote Similarity NPD6099 Approved
0.662 Remote Similarity NPD5619 Clinical (unspecified phase)
0.6614 Remote Similarity NPD8470 Clinical (unspecified phase)
0.6611 Remote Similarity NPD4380 Phase 2
0.661 Remote Similarity NPD5401 Approved
0.661 Remote Similarity NPD4378 Clinical (unspecified phase)
0.6608 Remote Similarity NPD7097 Phase 1
0.6598 Remote Similarity NPD8150 Discontinued
0.6598 Remote Similarity NPD8424 Clinical (unspecified phase)
0.6597 Remote Similarity NPD8368 Discontinued
0.6596 Remote Similarity NPD7473 Discontinued
0.6595 Remote Similarity NPD5494 Approved
0.659 Remote Similarity NPD2346 Discontinued
0.6588 Remote Similarity NPD6355 Discontinued
0.6585 Remote Similarity NPD7701 Phase 2
0.658 Remote Similarity NPD8407 Phase 2
0.6571 Remote Similarity NPD3750 Approved
0.657 Remote Similarity NPD7801 Approved
0.6568 Remote Similarity NPD8032 Phase 2
0.6554 Remote Similarity NPD6143 Clinical (unspecified phase)
0.6545 Remote Similarity NPD7736 Approved
0.6536 Remote Similarity NPD920 Approved
0.6536 Remote Similarity NPD6980 Clinical (unspecified phase)
0.6531 Remote Similarity NPD8435 Approved
0.6522 Remote Similarity NPD7768 Phase 2
0.6517 Remote Similarity NPD7410 Clinical (unspecified phase)
0.6503 Remote Similarity NPD2393 Clinical (unspecified phase)
0.6494 Remote Similarity NPD1471 Phase 3
0.6491 Remote Similarity NPD5735 Approved
0.6488 Remote Similarity NPD7999 Approved
0.6482 Remote Similarity NPD6534 Approved
0.6482 Remote Similarity NPD6535 Approved
0.6477 Remote Similarity NPD7003 Approved
0.6474 Remote Similarity NPD7033 Discontinued
0.6474 Remote Similarity NPD2799 Discontinued
0.6474 Remote Similarity NPD3748 Approved
0.6471 Remote Similarity NPD6663 Approved
0.6471 Remote Similarity NPD7961 Discontinued
0.6468 Remote Similarity NPD7700 Phase 2
0.6468 Remote Similarity NPD7699 Phase 2
0.6467 Remote Similarity NPD6007 Clinical (unspecified phase)
0.6457 Remote Similarity NPD1549 Phase 2
0.6453 Remote Similarity NPD6353 Approved
0.6452 Remote Similarity NPD919 Approved
0.6449 Remote Similarity NPD8155 Clinical (unspecified phase)
0.6447 Remote Similarity NPD8397 Clinical (unspecified phase)
0.6447 Remote Similarity NPD8360 Approved
0.6447 Remote Similarity NPD8361 Approved
0.6441 Remote Similarity NPD6190 Approved
0.6437 Remote Similarity NPD2796 Approved
0.6436 Remote Similarity NPD7229 Phase 3
0.6436 Remote Similarity NPD6232 Discontinued
0.6432 Remote Similarity NPD3882 Suspended
0.6425 Remote Similarity NPD642 Clinical (unspecified phase)
0.6425 Remote Similarity NPD2533 Approved
0.6425 Remote Similarity NPD2532 Approved
0.6425 Remote Similarity NPD2534 Approved
0.6422 Remote Similarity NPD6823 Phase 2
0.6412 Remote Similarity NPD6859 Clinical (unspecified phase)
0.6411 Remote Similarity NPD7783 Phase 2
0.6411 Remote Similarity NPD7782 Clinical (unspecified phase)
0.6404 Remote Similarity NPD4107 Approved
0.64 Remote Similarity NPD1552 Clinical (unspecified phase)
0.64 Remote Similarity NPD1550 Clinical (unspecified phase)
0.6398 Remote Similarity NPD7328 Approved
0.6398 Remote Similarity NPD7327 Approved
0.6398 Remote Similarity NPD7930 Approved
0.6394 Remote Similarity NPD8151 Discontinued
0.6392 Remote Similarity NPD6882 Approved
0.6359 Remote Similarity NPD1934 Approved
0.6358 Remote Similarity NPD7516 Approved
0.6353 Remote Similarity NPD7095 Approved
0.6343 Remote Similarity NPD1551 Phase 2
0.6341 Remote Similarity NPD6370 Approved
0.6341 Remote Similarity NPD3057 Approved
0.6331 Remote Similarity NPD5736 Approved
0.6329 Remote Similarity NPD6649 Approved
0.6329 Remote Similarity NPD6650 Approved
0.6325 Remote Similarity NPD1608 Approved
0.6324 Remote Similarity NPD4580 Approved
0.6324 Remote Similarity NPD1465 Phase 2
0.6316 Remote Similarity NPD6798 Discontinued
0.6316 Remote Similarity NPD3764 Approved
0.6316 Remote Similarity NPD2313 Discontinued
0.6313 Remote Similarity NPD643 Clinical (unspecified phase)
0.631 Remote Similarity NPD1049 Clinical (unspecified phase)
0.6304 Remote Similarity NPD7615 Clinical (unspecified phase)
0.6302 Remote Similarity NPD7177 Discontinued
0.6296 Remote Similarity NPD7907 Approved
0.6296 Remote Similarity NPD1247 Approved
0.6293 Remote Similarity NPD4482 Phase 3
0.6292 Remote Similarity NPD1878 Clinical (unspecified phase)
0.6287 Remote Similarity NPD5327 Phase 3
0.628 Remote Similarity NPD8033 Approved
0.628 Remote Similarity NPD7503 Approved
0.628 Remote Similarity NPD8380 Approved
0.628 Remote Similarity NPD8379 Approved
0.628 Remote Similarity NPD8296 Approved

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data