Structure

Physi-Chem Properties

Molecular Weight:  904.23
Volume:  825.698
LogP:  0.685
LogD:  0.147
LogS:  -4.507
# Rotatable Bonds:  12
TPSA:  374.88
# H-Bond Aceptor:  23
# H-Bond Donor:  13
# Rings:  7
# Heavy Atoms:  23

MedChem Properties

QED Drug-Likeness Score:  0.044
Synthetic Accessibility Score:  5.725
Fsp3:  0.415
Lipinski Rule-of-5:  Rejected
Pfizer Rule:  Accepted
GSK Rule:  Rejected
BMS Rule:  2
Golden Triangle Rule:  Rejected
Chelating Alert:  1
PAINS Alert:  1

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -6.667
MDCK Permeability:  3.692235259222798e-05
Pgp-inhibitor:  0.006
Pgp-substrate:  0.997
Human Intestinal Absorption (HIA):  0.928
20% Bioavailability (F20%):  0.002
30% Bioavailability (F30%):  1.0

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.075
Plasma Protein Binding (PPB):  91.99186706542969%
Volume Distribution (VD):  0.587
Pgp-substrate:  15.610790252685547%

ADMET: Metabolism

CYP1A2-inhibitor:  0.071
CYP1A2-substrate:  0.01
CYP2C19-inhibitor:  0.025
CYP2C19-substrate:  0.042
CYP2C9-inhibitor:  0.04
CYP2C9-substrate:  0.058
CYP2D6-inhibitor:  0.036
CYP2D6-substrate:  0.114
CYP3A4-inhibitor:  0.032
CYP3A4-substrate:  0.002

ADMET: Excretion

Clearance (CL):  0.91
Half-life (T1/2):  0.758

ADMET: Toxicity

hERG Blockers:  0.197
Human Hepatotoxicity (H-HT):  0.12
Drug-inuced Liver Injury (DILI):  0.984
AMES Toxicity:  0.722
Rat Oral Acute Toxicity:  0.024
Maximum Recommended Daily Dose:  0.003
Skin Sensitization:  0.953
Carcinogencity:  0.079
Eye Corrosion:  0.003
Eye Irritation:  0.151
Respiratory Toxicity:  0.008

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Similar NPs/Drugs  

  Natural Product: NPC223834

Natural Product ID:  NPC223834
Common Name*:   Dihydrovomifoliol-O-Beta-D-Glucopyranoside
IUPAC Name:   (4S)-4-hydroxy-3,5,5-trimethyl-4-[(3R)-3-[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxybutyl]cyclohex-2-en-1-one
Synonyms:  
Standard InCHIKey:  CZYPGTRKJFYXLT-SUHXYMONSA-N
Standard InCHI:  InChI=1S/C19H32O8/c1-10-7-12(21)8-18(3,4)19(10,25)6-5-11(2)26-17-16(24)15(23)14(22)13(9-20)27-17/h7,11,13-17,20,22-25H,5-6,8-9H2,1-4H3/t11-,13-,14-,15+,16-,17-,19-/m1/s1
SMILES:  OC[C@H]1O[C@@H](O[C@@H](CC[C@@]2(O)C(=CC(=O)CC2(C)C)C)C)[C@@H]([C@H]([C@@H]1O)O)O
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL3326713
PubChem CID:   14135399
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000012] Lipids and lipid-like molecules
      • [CHEMONTID:0003909] Fatty Acyls
        • [CHEMONTID:0001766] Fatty acyl glycosides
          • [CHEMONTID:0003861] Fatty acyl glycosides of mono- and disaccharides

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO19369 Bacillus thuringiensis Species Bacillaceae Bacteria n.a. n.a. n.a. PMID[11087590]
NPO6836 Alpinia blepharocalyx Species Zingiberaceae Eukaryota seeds Mengha, Yunnan Province, China 1991-Aug PMID[11277741]
NPO6836 Alpinia blepharocalyx Species Zingiberaceae Eukaryota seeds n.a. n.a. PMID[11325233]
NPO11884 Macaranga tanarius Species Euphorbiaceae Eukaryota n.a. leaf n.a. PMID[11421757]
NPO6836 Alpinia blepharocalyx Species Zingiberaceae Eukaryota Seeds n.a. n.a. PMID[11430002]
NPO23577 Wolfiporia cocos Species Coriolaceae Eukaryota n.a. n.a. n.a. PMID[11975480]
NPO3261 Aplysina archeri Species Aplysinidae Eukaryota n.a. n.a. n.a. PMID[1324982]
NPO6457 Pinus strobus Species Pinaceae Eukaryota n.a. heartwood n.a. PMID[13465274]
NPO17593 Pinus sylvestris Species Pinaceae Eukaryota n.a. n.a. n.a. PMID[1536925]
NPO10729 Lechevalieria aerocolonigenes Species Pseudonocardiaceae Bacteria n.a. n.a. n.a. PMID[15620255]
NPO11884 Macaranga tanarius Species Euphorbiaceae Eukaryota n.a. leaf n.a. PMID[15974621]
NPO11884 Macaranga tanarius Species Euphorbiaceae Eukaryota leaves Krachong waterfall area, Trang Province, Thailand 2001-APR PMID[15974621]
NPO14054 Penicillium janczewskii Species Aspergillaceae Eukaryota n.a. n.a. n.a. PMID[16180822]
NPO3453 Elaeocarpus fuscoides Species Elaeocarpaceae Eukaryota leaves n.a. n.a. PMID[17451272]
NPO422 Euphorbia cornigera Species Euphorbiaceae Eukaryota n.a. n.a. n.a. PMID[17512094]
NPO11884 Macaranga tanarius Species Euphorbiaceae Eukaryota n.a. leaf n.a. PMID[18844422]
NPO11884 Macaranga tanarius Species Euphorbiaceae Eukaryota leaves n.a. n.a. PMID[18844422]
NPO422 Euphorbia cornigera Species Euphorbiaceae Eukaryota n.a. n.a. n.a. PMID[19376614]
NPO23577 Wolfiporia cocos Species Coriolaceae Eukaryota epidermis of the sclerotia n.a. n.a. PMID[19746919]
NPO6648 Piper retrofractum Species Piperaceae Eukaryota Fruits n.a. n.a. PMID[23506561]
NPO17593 Pinus sylvestris Species Pinaceae Eukaryota n.a. seed n.a. PMID[24225786]
NPO6648 Piper retrofractum Species Piperaceae Eukaryota leaves n.a. n.a. PMID[25127165]
NPO23577 Wolfiporia cocos Species Coriolaceae Eukaryota n.a. n.a. n.a. PMID[27808511]
NPO11884 Macaranga tanarius Species Euphorbiaceae Eukaryota n.a. n.a. n.a. PMID[28972755]
NPO2697 Monodora tenuifolia Species Annonaceae Eukaryota n.a. n.a. n.a. PMID[3509958]
NPO23577 Wolfiporia cocos Species Coriolaceae Eukaryota n.a. n.a. n.a. PMID[8984162]
NPO6836 Alpinia blepharocalyx Species Zingiberaceae Eukaryota n.a. n.a. n.a. PMID[9461664]
NPO11884 Macaranga tanarius Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO6836 Alpinia blepharocalyx Species Zingiberaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO4564 Anguilla japonica Species Anguillidae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO17593 Pinus sylvestris Species Pinaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO24089 Alcea rosea Species Malvaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO6836 Alpinia blepharocalyx Species Zingiberaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO1209 Swartzia madagascariensis Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO8543 Meconopsis horridula Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO23577 Wolfiporia cocos Species Coriolaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO11884 Macaranga tanarius Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO2408 Millettia laurentii Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO4564 Anguilla japonica Species Anguillidae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO17593 Pinus sylvestris Species Pinaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO1581 Passiflora caerulea Species Passifloraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO6648 Piper retrofractum Species Piperaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO11884 Macaranga tanarius Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO17593 Pinus sylvestris Species Pinaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO23577 Wolfiporia cocos Species Coriolaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO24089 Alcea rosea Species Malvaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO7449 Eleutherobia albiflora Species Alcyoniidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3956 Maesa ramentacea Species Primulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8058 Pluchea odorata Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7606 Salacia lehmbachii Species Celastraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12330 Pseudophryne coriacea Species Myobatrachidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1209 Swartzia madagascariensis Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7007 Eucalyptus jenseni Species Myrtaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3453 Elaeocarpus fuscoides Species Elaeocarpaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1390 Melolontha melolontha Species Scarabaeidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO305 Vitex pinnata Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4564 Anguilla japonica Species Anguillidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO422 Euphorbia cornigera Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25760 Aspergillus striatus Species Aspergillaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO477 Lepraria xanthina Species Stereocaulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5261 Sideroxylon cubense Species Sapotaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7760 Macrolepiota neomastoidea Species Agaricaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO849 Euonymus tingens Species Celastraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5508 Stevia purpurea Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11884 Macaranga tanarius Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2250 Hylocomium splendens Species Hylocomiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11747 Ocimum tenuiflorum Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15164 Jacobaea adonidifolia Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7087 Oxera splendida Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8543 Meconopsis horridula Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2697 Monodora tenuifolia Species Annonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5584 Aldisa sanguinea Species Dorididae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6457 Pinus strobus Species Pinaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO295 Kokoona reflexa Species Celastraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3280 Penicillium crustaceum Species Aspergillaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO896 Streptomyces kanamyceticus Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO4274 Alcyonium utinomii Species Alcyoniidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3261 Aplysina archeri Species Aplysinidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10729 Lechevalieria aerocolonigenes Species Pseudonocardiaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO6836 Alpinia blepharocalyx Species Zingiberaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3408 Viguiera decurrens Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5975 Aspergillus carneus Species Aspergillaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19369 Bacillus thuringiensis Species Bacillaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO1242 Balanops australiana Species Balanopaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1489 Pseudoplexaura flagellosa Species Plexauridae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18993 Araiostegiella perdurans Species Davalliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17593 Pinus sylvestris Species Pinaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO24089 Alcea rosea Species Malvaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23577 Wolfiporia cocos Species Coriolaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14054 Penicillium janczewskii Species Aspergillaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2408 Millettia laurentii Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3554 Aonidiella aurantii Species Diaspididae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15487 Gymnopus confluens Species Omphalotaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2993 0totodarus sloanii Species Ommastrephidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5344 Calodendrum capense Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6648 Piper retrofractum Species Piperaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4949 Salvia yosgadensis Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6231 Cortinarius odoratus Species Cortinariaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6330 Croton caudatus Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1581 Passiflora caerulea Species Passifloraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3743 Sideritis brevibracteata Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT60 Individual Protein Lysosomal alpha-glucosidase Homo sapiens Inhibition = 6.9 % PMID[522761]
NPT35 Others n.a. Activity = 0.12 uM PMID[522761]
NPT35 Others n.a. Activity = 0.92 uM PMID[522761]
NPT35 Others n.a. Activity = 0.21 uM PMID[522761]
NPT35 Others n.a. Activity = 0.34 uM PMID[522761]
NPT35 Others n.a. Activity = 20.5 % PMID[522761]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC223834 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9167 High Similarity NPC474194
0.9158 High Similarity NPC108141
0.9072 High Similarity NPC56071
0.9072 High Similarity NPC307517
0.9072 High Similarity NPC81483
0.9072 High Similarity NPC70733
0.9072 High Similarity NPC169468
0.9072 High Similarity NPC61630
0.89 High Similarity NPC151516
0.8889 High Similarity NPC154127
0.8704 High Similarity NPC234522
0.8586 High Similarity NPC278506
0.8585 High Similarity NPC174836
0.8558 High Similarity NPC473288
0.8545 High Similarity NPC48692
0.85 High Similarity NPC198422
0.85 High Similarity NPC40182
0.8485 Intermediate Similarity NPC256230
0.8469 Intermediate Similarity NPC2003
0.8469 Intermediate Similarity NPC25701
0.8426 Intermediate Similarity NPC181145
0.8396 Intermediate Similarity NPC83005
0.8393 Intermediate Similarity NPC28532
0.8381 Intermediate Similarity NPC177524
0.8381 Intermediate Similarity NPC219900
0.8381 Intermediate Similarity NPC392
0.8381 Intermediate Similarity NPC272576
0.8333 Intermediate Similarity NPC311592
0.8333 Intermediate Similarity NPC75167
0.83 Intermediate Similarity NPC143446
0.8286 Intermediate Similarity NPC293512
0.8269 Intermediate Similarity NPC470104
0.8265 Intermediate Similarity NPC302584
0.8252 Intermediate Similarity NPC150463
0.8252 Intermediate Similarity NPC214277
0.8241 Intermediate Similarity NPC471967
0.8224 Intermediate Similarity NPC154856
0.8224 Intermediate Similarity NPC46407
0.8224 Intermediate Similarity NPC52241
0.8224 Intermediate Similarity NPC235014
0.8224 Intermediate Similarity NPC475317
0.8165 Intermediate Similarity NPC62696
0.8165 Intermediate Similarity NPC260665
0.8165 Intermediate Similarity NPC477944
0.8165 Intermediate Similarity NPC293038
0.8144 Intermediate Similarity NPC471755
0.8144 Intermediate Similarity NPC471756
0.8142 Intermediate Similarity NPC202051
0.8131 Intermediate Similarity NPC246205
0.8119 Intermediate Similarity NPC90583
0.8095 Intermediate Similarity NPC100955
0.8095 Intermediate Similarity NPC121566
0.8091 Intermediate Similarity NPC220293
0.8091 Intermediate Similarity NPC74727
0.8091 Intermediate Similarity NPC102088
0.8081 Intermediate Similarity NPC475441
0.8081 Intermediate Similarity NPC472197
0.8077 Intermediate Similarity NPC476126
0.8077 Intermediate Similarity NPC476235
0.8073 Intermediate Similarity NPC210420
0.8073 Intermediate Similarity NPC37739
0.8073 Intermediate Similarity NPC46388
0.8073 Intermediate Similarity NPC474265
0.8073 Intermediate Similarity NPC130427
0.8039 Intermediate Similarity NPC240372
0.8036 Intermediate Similarity NPC45475
0.8019 Intermediate Similarity NPC63023
0.8019 Intermediate Similarity NPC95243
0.8 Intermediate Similarity NPC189884
0.8 Intermediate Similarity NPC474410
0.8 Intermediate Similarity NPC293658
0.8 Intermediate Similarity NPC264153
0.8 Intermediate Similarity NPC138334
0.8 Intermediate Similarity NPC47063
0.8 Intermediate Similarity NPC320089
0.8 Intermediate Similarity NPC269315
0.8 Intermediate Similarity NPC271138
0.8 Intermediate Similarity NPC204458
0.7982 Intermediate Similarity NPC191763
0.7981 Intermediate Similarity NPC476213
0.7981 Intermediate Similarity NPC477870
0.7981 Intermediate Similarity NPC477871
0.7981 Intermediate Similarity NPC476246
0.7981 Intermediate Similarity NPC97435
0.7981 Intermediate Similarity NPC280991
0.7963 Intermediate Similarity NPC57362
0.7963 Intermediate Similarity NPC204407
0.7963 Intermediate Similarity NPC306746
0.7963 Intermediate Similarity NPC237503
0.7963 Intermediate Similarity NPC167383
0.7963 Intermediate Similarity NPC137917
0.7949 Intermediate Similarity NPC152091
0.7946 Intermediate Similarity NPC474483
0.7946 Intermediate Similarity NPC471547
0.7946 Intermediate Similarity NPC23046
0.7946 Intermediate Similarity NPC309433
0.7944 Intermediate Similarity NPC143609
0.7928 Intermediate Similarity NPC473882
0.7928 Intermediate Similarity NPC165439
0.7928 Intermediate Similarity NPC474557
0.7928 Intermediate Similarity NPC472274
0.7928 Intermediate Similarity NPC475163
0.7928 Intermediate Similarity NPC477580
0.7925 Intermediate Similarity NPC470768
0.7909 Intermediate Similarity NPC116794
0.7909 Intermediate Similarity NPC256798
0.7909 Intermediate Similarity NPC128925
0.7905 Intermediate Similarity NPC201191
0.7895 Intermediate Similarity NPC473130
0.7895 Intermediate Similarity NPC268184
0.789 Intermediate Similarity NPC199457
0.789 Intermediate Similarity NPC476885
0.789 Intermediate Similarity NPC476882
0.789 Intermediate Similarity NPC474589
0.789 Intermediate Similarity NPC78046
0.789 Intermediate Similarity NPC68419
0.789 Intermediate Similarity NPC220984
0.789 Intermediate Similarity NPC476883
0.789 Intermediate Similarity NPC270667
0.789 Intermediate Similarity NPC110139
0.789 Intermediate Similarity NPC274507
0.789 Intermediate Similarity NPC29069
0.789 Intermediate Similarity NPC75747
0.789 Intermediate Similarity NPC127056
0.789 Intermediate Similarity NPC476881
0.789 Intermediate Similarity NPC174679
0.789 Intermediate Similarity NPC476886
0.789 Intermediate Similarity NPC279554
0.789 Intermediate Similarity NPC90856
0.789 Intermediate Similarity NPC164194
0.789 Intermediate Similarity NPC59804
0.789 Intermediate Similarity NPC102914
0.789 Intermediate Similarity NPC476880
0.789 Intermediate Similarity NPC476887
0.789 Intermediate Similarity NPC7870
0.789 Intermediate Similarity NPC129340
0.789 Intermediate Similarity NPC136877
0.789 Intermediate Similarity NPC476884
0.789 Intermediate Similarity NPC27551
0.789 Intermediate Similarity NPC108709
0.789 Intermediate Similarity NPC56713
0.789 Intermediate Similarity NPC475296
0.789 Intermediate Similarity NPC269095
0.789 Intermediate Similarity NPC114961
0.7885 Intermediate Similarity NPC64348
0.7876 Intermediate Similarity NPC473828
0.7876 Intermediate Similarity NPC473617
0.7876 Intermediate Similarity NPC176005
0.787 Intermediate Similarity NPC476123
0.787 Intermediate Similarity NPC177246
0.787 Intermediate Similarity NPC151393
0.787 Intermediate Similarity NPC28198
0.787 Intermediate Similarity NPC94942
0.787 Intermediate Similarity NPC284807
0.7864 Intermediate Similarity NPC266842
0.7864 Intermediate Similarity NPC91197
0.7864 Intermediate Similarity NPC309503
0.7864 Intermediate Similarity NPC96597
0.7864 Intermediate Similarity NPC125551
0.7864 Intermediate Similarity NPC155319
0.7864 Intermediate Similarity NPC124246
0.7864 Intermediate Similarity NPC239547
0.7863 Intermediate Similarity NPC297950
0.7863 Intermediate Similarity NPC222307
0.7857 Intermediate Similarity NPC58448
0.7857 Intermediate Similarity NPC160415
0.7857 Intermediate Similarity NPC31797
0.7857 Intermediate Similarity NPC279638
0.7857 Intermediate Similarity NPC471816
0.785 Intermediate Similarity NPC210178
0.785 Intermediate Similarity NPC470763
0.785 Intermediate Similarity NPC111952
0.785 Intermediate Similarity NPC162033
0.785 Intermediate Similarity NPC470767
0.785 Intermediate Similarity NPC239961
0.7838 Intermediate Similarity NPC200944
0.7838 Intermediate Similarity NPC73455
0.7838 Intermediate Similarity NPC473159
0.7838 Intermediate Similarity NPC178981
0.7833 Intermediate Similarity NPC231240
0.783 Intermediate Similarity NPC99266
0.783 Intermediate Similarity NPC8196
0.783 Intermediate Similarity NPC478057
0.7826 Intermediate Similarity NPC170084
0.7826 Intermediate Similarity NPC476204
0.7826 Intermediate Similarity NPC42675
0.7822 Intermediate Similarity NPC91654
0.7822 Intermediate Similarity NPC67398
0.7822 Intermediate Similarity NPC474792
0.7818 Intermediate Similarity NPC179434
0.7818 Intermediate Similarity NPC211798
0.7818 Intermediate Similarity NPC285410
0.7818 Intermediate Similarity NPC297208
0.7818 Intermediate Similarity NPC164419
0.7818 Intermediate Similarity NPC250481
0.7818 Intermediate Similarity NPC108748
0.7818 Intermediate Similarity NPC235841
0.7818 Intermediate Similarity NPC30397
0.7818 Intermediate Similarity NPC473481
0.7818 Intermediate Similarity NPC263827

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC223834 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.8381 Intermediate Similarity NPD6686 Approved
0.8286 Intermediate Similarity NPD6412 Phase 2
0.7798 Intermediate Similarity NPD8132 Clinical (unspecified phase)
0.7692 Intermediate Similarity NPD8328 Phase 3
0.7563 Intermediate Similarity NPD7507 Approved
0.7451 Intermediate Similarity NPD6698 Approved
0.7451 Intermediate Similarity NPD46 Approved
0.7377 Intermediate Similarity NPD7319 Approved
0.7311 Intermediate Similarity NPD6370 Approved
0.729 Intermediate Similarity NPD8029 Clinical (unspecified phase)
0.7265 Intermediate Similarity NPD7328 Approved
0.7265 Intermediate Similarity NPD7327 Approved
0.7227 Intermediate Similarity NPD8513 Phase 3
0.7227 Intermediate Similarity NPD8516 Approved
0.7227 Intermediate Similarity NPD8515 Approved
0.7227 Intermediate Similarity NPD7503 Approved
0.7227 Intermediate Similarity NPD8517 Approved
0.7203 Intermediate Similarity NPD7516 Approved
0.7193 Intermediate Similarity NPD8413 Clinical (unspecified phase)
0.7179 Intermediate Similarity NPD8295 Clinical (unspecified phase)
0.7143 Intermediate Similarity NPD6054 Approved
0.7143 Intermediate Similarity NPD6059 Approved
0.7143 Intermediate Similarity NPD8377 Approved
0.7143 Intermediate Similarity NPD8294 Approved
0.7105 Intermediate Similarity NPD6371 Approved
0.7083 Intermediate Similarity NPD8378 Approved
0.7083 Intermediate Similarity NPD8335 Approved
0.7083 Intermediate Similarity NPD8380 Approved
0.7083 Intermediate Similarity NPD8296 Approved
0.7083 Intermediate Similarity NPD8033 Approved
0.7083 Intermediate Similarity NPD8379 Approved
0.7073 Intermediate Similarity NPD8293 Discontinued
0.7069 Intermediate Similarity NPD8133 Approved
0.7034 Intermediate Similarity NPD7115 Discovery
0.7018 Intermediate Similarity NPD4061 Clinical (unspecified phase)
0.7016 Intermediate Similarity NPD7736 Approved
0.6983 Remote Similarity NPD6882 Approved
0.6972 Remote Similarity NPD4225 Approved
0.6967 Remote Similarity NPD6067 Discontinued
0.6957 Remote Similarity NPD5955 Clinical (unspecified phase)
0.6942 Remote Similarity NPD6016 Approved
0.6942 Remote Similarity NPD6015 Approved
0.6916 Remote Similarity NPD5282 Discontinued
0.6911 Remote Similarity NPD7492 Approved
0.6909 Remote Similarity NPD7640 Approved
0.6909 Remote Similarity NPD7639 Approved
0.6891 Remote Similarity NPD6009 Approved
0.6887 Remote Similarity NPD7983 Approved
0.6885 Remote Similarity NPD5988 Approved
0.6881 Remote Similarity NPD7902 Approved
0.687 Remote Similarity NPD6373 Approved
0.687 Remote Similarity NPD6372 Approved
0.6863 Remote Similarity NPD6400 Clinical (unspecified phase)
0.686 Remote Similarity NPD6319 Approved
0.6855 Remote Similarity NPD6616 Approved
0.6838 Remote Similarity NPD8297 Approved
0.6822 Remote Similarity NPD5779 Approved
0.6822 Remote Similarity NPD5778 Approved
0.6818 Remote Similarity NPD7638 Approved
0.68 Remote Similarity NPD7078 Approved
0.6783 Remote Similarity NPD5345 Clinical (unspecified phase)
0.678 Remote Similarity NPD4632 Approved
0.6765 Remote Similarity NPD6110 Phase 1
0.6759 Remote Similarity NPD7748 Approved
0.6754 Remote Similarity NPD7128 Approved
0.6754 Remote Similarity NPD5739 Approved
0.6754 Remote Similarity NPD6675 Approved
0.6754 Remote Similarity NPD6402 Approved
0.6752 Remote Similarity NPD6649 Approved
0.6752 Remote Similarity NPD6650 Approved
0.6731 Remote Similarity NPD3618 Phase 1
0.6729 Remote Similarity NPD7515 Phase 2
0.6727 Remote Similarity NPD6084 Phase 2
0.6727 Remote Similarity NPD6083 Phase 2
0.6696 Remote Similarity NPD5954 Clinical (unspecified phase)
0.6696 Remote Similarity NPD5344 Discontinued
0.6696 Remote Similarity NPD7899 Clinical (unspecified phase)
0.6694 Remote Similarity NPD7641 Discontinued
0.6667 Remote Similarity NPD6399 Phase 3
0.6667 Remote Similarity NPD8074 Phase 3
0.664 Remote Similarity NPD8342 Approved
0.664 Remote Similarity NPD8299 Approved
0.664 Remote Similarity NPD8341 Approved
0.664 Remote Similarity NPD8340 Approved
0.6638 Remote Similarity NPD7320 Approved
0.6638 Remote Similarity NPD6881 Approved
0.6638 Remote Similarity NPD6899 Approved
0.6637 Remote Similarity NPD5211 Phase 2
0.6636 Remote Similarity NPD7838 Discovery
0.6614 Remote Similarity NPD6033 Approved
0.6606 Remote Similarity NPD7901 Clinical (unspecified phase)
0.6606 Remote Similarity NPD7900 Approved
0.6577 Remote Similarity NPD4755 Approved
0.6574 Remote Similarity NPD6411 Approved
0.656 Remote Similarity NPD7642 Approved
0.6555 Remote Similarity NPD6053 Discontinued
0.6552 Remote Similarity NPD5697 Approved
0.6552 Remote Similarity NPD5701 Approved
0.6545 Remote Similarity NPD5695 Phase 3
0.6542 Remote Similarity NPD5328 Approved
0.6542 Remote Similarity NPD4753 Phase 2
0.6538 Remote Similarity NPD3666 Approved
0.6538 Remote Similarity NPD3133 Approved
0.6538 Remote Similarity NPD3665 Phase 1
0.6525 Remote Similarity NPD6883 Approved
0.6525 Remote Similarity NPD4634 Approved
0.6525 Remote Similarity NPD7290 Approved
0.6525 Remote Similarity NPD7102 Approved
0.6522 Remote Similarity NPD5141 Approved
0.6518 Remote Similarity NPD5696 Approved
0.6514 Remote Similarity NPD4202 Approved
0.6512 Remote Similarity NPD6914 Discontinued
0.6509 Remote Similarity NPD7524 Approved
0.6486 Remote Similarity NPD7839 Suspended
0.6471 Remote Similarity NPD6869 Approved
0.6471 Remote Similarity NPD6617 Approved
0.6471 Remote Similarity NPD6847 Approved
0.6471 Remote Similarity NPD8130 Phase 1
0.6466 Remote Similarity NPD6008 Approved
0.6462 Remote Similarity NPD7260 Phase 2
0.646 Remote Similarity NPD4696 Approved
0.646 Remote Similarity NPD5285 Approved
0.646 Remote Similarity NPD4700 Approved
0.646 Remote Similarity NPD5286 Approved
0.6457 Remote Similarity NPD8451 Approved
0.6441 Remote Similarity NPD6014 Approved
0.6441 Remote Similarity NPD6013 Approved
0.6441 Remote Similarity NPD6012 Approved
0.6429 Remote Similarity NPD7830 Approved
0.6429 Remote Similarity NPD7604 Phase 2
0.6429 Remote Similarity NPD7829 Approved
0.6422 Remote Similarity NPD6079 Approved
0.6415 Remote Similarity NPD7521 Approved
0.6415 Remote Similarity NPD7146 Approved
0.6415 Remote Similarity NPD5330 Approved
0.6415 Remote Similarity NPD6684 Approved
0.6415 Remote Similarity NPD4623 Approved
0.6415 Remote Similarity NPD4519 Discontinued
0.6415 Remote Similarity NPD7334 Approved
0.6415 Remote Similarity NPD5279 Phase 3
0.6415 Remote Similarity NPD6409 Approved
0.6406 Remote Similarity NPD8448 Approved
0.64 Remote Similarity NPD5983 Phase 2
0.6396 Remote Similarity NPD5210 Approved
0.6396 Remote Similarity NPD4629 Approved
0.6389 Remote Similarity NPD5764 Clinical (unspecified phase)
0.6389 Remote Similarity NPD6101 Approved
0.6385 Remote Similarity NPD5956 Approved
0.6381 Remote Similarity NPD7338 Clinical (unspecified phase)
0.6381 Remote Similarity NPD4786 Approved
0.6356 Remote Similarity NPD6011 Approved
0.6349 Remote Similarity NPD8080 Discontinued
0.6348 Remote Similarity NPD7632 Discontinued
0.6348 Remote Similarity NPD4633 Approved
0.6348 Remote Similarity NPD5224 Approved
0.6348 Remote Similarity NPD5225 Approved
0.6348 Remote Similarity NPD5226 Approved
0.6346 Remote Similarity NPD3667 Approved
0.6346 Remote Similarity NPD4752 Clinical (unspecified phase)
0.6339 Remote Similarity NPD4697 Phase 3
0.6333 Remote Similarity NPD6401 Clinical (unspecified phase)
0.633 Remote Similarity NPD5785 Approved
0.6328 Remote Similarity NPD6336 Discontinued
0.6325 Remote Similarity NPD4767 Approved
0.6325 Remote Similarity NPD4768 Approved
0.6321 Remote Similarity NPD1694 Approved
0.6316 Remote Similarity NPD6648 Approved
0.6311 Remote Similarity NPD4695 Discontinued
0.6296 Remote Similarity NPD6672 Approved
0.6296 Remote Similarity NPD6903 Approved
0.6296 Remote Similarity NPD5737 Approved
0.6296 Remote Similarity NPD7513 Clinical (unspecified phase)
0.6293 Remote Similarity NPD5174 Approved
0.6293 Remote Similarity NPD5175 Approved
0.6286 Remote Similarity NPD6695 Phase 3
0.6275 Remote Similarity NPD5784 Clinical (unspecified phase)
0.6273 Remote Similarity NPD5281 Approved
0.6273 Remote Similarity NPD7637 Suspended
0.6273 Remote Similarity NPD5284 Approved
0.627 Remote Similarity NPD8444 Approved
0.627 Remote Similarity NPD6921 Approved
0.6262 Remote Similarity NPD3574 Clinical (unspecified phase)
0.6261 Remote Similarity NPD5223 Approved
0.626 Remote Similarity NPD8390 Approved
0.626 Remote Similarity NPD8391 Approved
0.626 Remote Similarity NPD8392 Approved
0.625 Remote Similarity NPD1698 Clinical (unspecified phase)
0.625 Remote Similarity NPD6356 Clinical (unspecified phase)
0.6239 Remote Similarity NPD8170 Clinical (unspecified phase)
0.6231 Remote Similarity NPD8337 Approved
0.6231 Remote Similarity NPD8336 Approved
0.6222 Remote Similarity NPD7966 Clinical (unspecified phase)
0.6218 Remote Similarity NPD4730 Approved
0.6218 Remote Similarity NPD4729 Approved
0.621 Remote Similarity NPD8137 Clinical (unspecified phase)
0.6204 Remote Similarity NPD3573 Approved
0.6195 Remote Similarity NPD5221 Approved
0.6195 Remote Similarity NPD5222 Approved
0.6195 Remote Similarity NPD5220 Clinical (unspecified phase)
0.619 Remote Similarity NPD4223 Phase 3

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data