Structure

Physi-Chem Properties

Molecular Weight:  302.1
Volume:  278.704
LogP:  -0.734
LogD:  -0.366
LogS:  -0.724
# Rotatable Bonds:  4
TPSA:  128.84
# H-Bond Aceptor:  8
# H-Bond Donor:  5
# Rings:  2
# Heavy Atoms:  8

MedChem Properties

QED Drug-Likeness Score:  0.458
Synthetic Accessibility Score:  3.404
Fsp3:  0.538
Lipinski Rule-of-5:  Accepted
Pfizer Rule:  Accepted
GSK Rule:  Accepted
BMS Rule:  0
Golden Triangle Rule:  Accepted
Chelating Alert:  1
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -6.01
MDCK Permeability:  5.165482798474841e-05
Pgp-inhibitor:  0.003
Pgp-substrate:  0.08
Human Intestinal Absorption (HIA):  0.7
20% Bioavailability (F20%):  0.005
30% Bioavailability (F30%):  0.911

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.395
Plasma Protein Binding (PPB):  54.179134368896484%
Volume Distribution (VD):  0.543
Pgp-substrate:  32.05976486206055%

ADMET: Metabolism

CYP1A2-inhibitor:  0.089
CYP1A2-substrate:  0.119
CYP2C19-inhibitor:  0.019
CYP2C19-substrate:  0.719
CYP2C9-inhibitor:  0.002
CYP2C9-substrate:  0.448
CYP2D6-inhibitor:  0.017
CYP2D6-substrate:  0.483
CYP3A4-inhibitor:  0.005
CYP3A4-substrate:  0.039

ADMET: Excretion

Clearance (CL):  3.936
Half-life (T1/2):  0.878

ADMET: Toxicity

hERG Blockers:  0.098
Human Hepatotoxicity (H-HT):  0.059
Drug-inuced Liver Injury (DILI):  0.059
AMES Toxicity:  0.36
Rat Oral Acute Toxicity:  0.044
Maximum Recommended Daily Dose:  0.004
Skin Sensitization:  0.463
Carcinogencity:  0.505
Eye Corrosion:  0.014
Eye Irritation:  0.354
Respiratory Toxicity:  0.053

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  Natural Product: NPC221090

Natural Product ID:  NPC221090
Common Name*:   Tachioside
IUPAC Name:   (2S,3R,4S,5S,6R)-2-(4-hydroxy-3-methoxyphenoxy)-6-(hydroxymethyl)oxane-3,4,5-triol
Synonyms:   Tachioside
Standard InCHIKey:  KWVHACHAQJFTLZ-UJPOAAIJSA-N
Standard InCHI:  InChI=1S/C13H18O8/c1-19-8-4-6(2-3-7(8)15)20-13-12(18)11(17)10(16)9(5-14)21-13/h2-4,9-18H,5H2,1H3/t9-,10-,11+,12-,13-/m1/s1
SMILES:  OC[C@H]1O[C@@H](Oc2ccc(c(c2)OC)O)[C@@H]([C@H]([C@@H]1O)O)O
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL1077078
PubChem CID:   11962143
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0004603] Organic oxygen compounds
      • [CHEMONTID:0000323] Organooxygen compounds
        • [CHEMONTID:0000011] Carbohydrates and carbohydrate conjugates
          • [CHEMONTID:0002105] Glycosyl compounds
            • [CHEMONTID:0004165] Phenolic glycosides

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO25114 Linum usitatissimum Species Linaceae Eukaryota Seeds n.a. DOI[10.1002/ejlt.201100207]
NPO25114 Linum usitatissimum Species Linaceae Eukaryota n.a. n.a. n.a. DOI[10.1007/s11746-997-0093-1]
NPO12079 Dysoxylum cumingianum Species Meliaceae Eukaryota n.a. leaf n.a. DOI[10.1021/jo00051a050]
NPO25114 Linum usitatissimum Species Linaceae Eukaryota Seeds n.a. DOI[10.5219/332]
NPO11391 Polygonum cuspidatum Species Polygonaceae Eukaryota n.a. n.a. n.a. PMID[11076555]
NPO14520 Bassia muricata Species Chenopodiaceae Eukaryota n.a. aerial part n.a. PMID[11454355]
NPO11391 Polygonum cuspidatum Species Polygonaceae Eukaryota Roots n.a. n.a. PMID[11459643]
NPO8063 Clerodendrum calamitosum Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[11473423]
NPO11391 Polygonum cuspidatum Species Polygonaceae Eukaryota n.a. n.a. n.a. PMID[1517743]
NPO12477 Dodonaea viscosa Species Sapindaceae Eukaryota n.a. n.a. n.a. PMID[19719093]
NPO18521 Capparis flavicans Species Capparaceae Eukaryota aerial parts Khon Kaen Province, Thailand 2006-Aug PMID[19943620]
NPO12477 Dodonaea viscosa Species Sapindaceae Eukaryota n.a. n.a. n.a. PMID[22512738]
NPO25114 Linum usitatissimum Species Linaceae Eukaryota n.a. n.a. n.a. PMID[22537213]
NPO6648 Piper retrofractum Species Piperaceae Eukaryota Fruits n.a. n.a. PMID[23506561]
NPO25114 Linum usitatissimum Species Linaceae Eukaryota n.a. n.a. n.a. PMID[24417583]
NPO6648 Piper retrofractum Species Piperaceae Eukaryota leaves n.a. n.a. PMID[25127165]
NPO25114 Linum usitatissimum Species Linaceae Eukaryota Seeds n.a. n.a. PMID[26923696]
NPO13237 Teucrium yemense Species n.a. n.a. Aerial Parts n.a. n.a. PMID[28581290]
NPO12588 Cornus officinalis Species Cornaceae Eukaryota Fruits n.a. n.a. PMID[29140705]
NPO11391 Polygonum cuspidatum Species Polygonaceae Eukaryota n.a. n.a. n.a. PMID[8277318]
NPO25114 Linum usitatissimum Species Linaceae Eukaryota n.a. n.a. Database[FooDB]
NPO25114 Linum usitatissimum Species Linaceae Eukaryota Seed n.a. n.a. Database[FooDB]
NPO25114 Linum usitatissimum Species Linaceae Eukaryota Seed Oil n.a. n.a. Database[FooDB]
NPO25114 Linum usitatissimum Species Linaceae Eukaryota n.a. n.a. Database[FooDB]
NPO14014 Eriocheir sinensis Species Varunidae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO11391 Polygonum cuspidatum Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO23659 Rostellularia procumbens n.a. n.a. n.a. n.a. n.a. n.a. Database[HerDing]
NPO25114 Linum usitatissimum Species Linaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO30858 Atractylodes japonica Species Asteraceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO2340 Caulis spatholobi n.a. n.a. n.a. n.a. n.a. n.a. Database[HerDing]
NPO22230 Rhodiola crenulata Species Crassulaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO12477 Dodonaea viscosa Species Sapindaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO12588 Cornus officinalis Species Cornaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO14304 Physalis alkekengi Species Solanaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO2340 Caulis spatholobi n.a. n.a. n.a. n.a. n.a. n.a. Database[TCMID]
NPO6648 Piper retrofractum Species Piperaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO277 Caulis millettiae n.a. n.a. n.a. n.a. n.a. n.a. Database[TCMID]
NPO14014 Eriocheir sinensis Species Varunidae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO23795 Herba seu radix cirsii japonici n.a. n.a. n.a. n.a. n.a. n.a. Database[TCMID]
NPO23659 Rostellularia procumbens n.a. n.a. n.a. n.a. n.a. n.a. Database[TCMID]
NPO12588 Cornus officinalis Species Cornaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO11391 Polygonum cuspidatum Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO25890 Herba cirsii japonici n.a. n.a. n.a. n.a. n.a. n.a. Database[TCMID]
NPO22230 Rhodiola crenulata Species Crassulaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO15297 Aconitum seravschanicum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO12477 Dodonaea viscosa Species Sapindaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO4853 Carduus crispus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO19689 Radix cirsii japonici Species Lymnaeidae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO14304 Physalis alkekengi Species Solanaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO25114 Linum usitatissimum Species Linaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO14014 Eriocheir sinensis Species Varunidae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO22230 Rhodiola crenulata Species Crassulaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO12588 Cornus officinalis Species Cornaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO4853 Carduus crispus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO30858 Atractylodes japonica Species Asteraceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO11391 Polygonum cuspidatum Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO12477 Dodonaea viscosa Species Sapindaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO23659 Rostellularia procumbens n.a. n.a. n.a. n.a. n.a. n.a. Database[TCM_Taiwan]
NPO14304 Physalis alkekengi Species Solanaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO25114 Linum usitatissimum Species Linaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO11391 Polygonum cuspidatum Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO12588 Cornus officinalis Species Cornaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO22230 Rhodiola crenulata Species Crassulaceae Eukaryota n.a. n.a. n.a. Database[TM-MC]
NPO9448 Dictyopteris australis Species Dictyotaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13237 Teucrium yemense Species n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO7819.1 Epichloe festucae var. lolii Varieties Clavicipitaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO986 Rattus rattus Species Muridae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8063 Clerodendrum calamitosum Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO25114 Linum usitatissimum Species Linaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14520 Bassia muricata Species Chenopodiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12079 Dysoxylum cumingianum Species Meliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13403 Gadus morhua callarias Species Gadidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10688 Flacourtia jangomas Species Salicaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11391 Polygonum cuspidatum Species Polygonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16590 Cytophaga hutchinsoni Species Cytophagaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO2631 Aster sedifolius Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO5932 Berchemia racemosa Species Rhamnaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15297 Aconitum seravschanicum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO9752 Miliusa velutina Species Annonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13421 Sphaerella laricina n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO22230 Rhodiola crenulata Species Crassulaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13716 Aconitum tasiromontanum Species Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14304 Physalis alkekengi Species Solanaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12252 Psychotria stachyoides Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1501 Senecio subdentatus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO4345 Caulocystis cephalornithos Species Sargassaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12477 Dodonaea viscosa Species Sapindaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22526 Justicia secunda Species Acanthaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO2198 Rivularia firma Species Rivulariaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO14014 Eriocheir sinensis Species Varunidae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18521 Capparis flavicans Species Capparaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13523 Neobalanocarpus heimii Species Dipterocarpaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO624 Isaria fumosorosea Species Cordycipitaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO10355 Echinopsis macrogona Species Cactaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14104 Dendriopoterium menendezii Species Rosaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO12588 Cornus officinalis Species Cornaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11580 Onobrychis arenaria Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14412 Aphyllocladus denticulatus Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23659 Rostellularia procumbens n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO3214 Lavandula vera Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8386 Enceliopsis argophylla Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6648 Piper retrofractum Species Piperaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14217 Adansonia grandidieri Species Malvaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO11749 Eria mollis Species Orchidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT83 Cell Line MCF7 Homo sapiens Activity < 0.1 uM PMID[540558]
NPT83 Cell Line MCF7 Homo sapiens Activity = 0.2 uM PMID[540558]
NPT83 Cell Line MCF7 Homo sapiens Activity > 100.0 uM PMID[540558]
NPT396 Cell Line T47D Homo sapiens Activity < 0.1 uM PMID[540558]
NPT396 Cell Line T47D Homo sapiens Activity = 10.0 uM PMID[540558]
NPT396 Cell Line T47D Homo sapiens Activity > 100.0 uM PMID[540558]
NPT60 Individual Protein Lysosomal alpha-glucosidase Homo sapiens Inhibition = 4.6 % PMID[540559]
NPT35 Others n.a. Activity = 0.21 uM PMID[540559]
NPT35 Others n.a. Activity = 1.65 uM PMID[540559]
NPT35 Others n.a. Activity = 0.63 uM PMID[540559]
NPT35 Others n.a. Activity = 21.42 % PMID[540559]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC221090 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9915 High Similarity NPC192810
0.9829 High Similarity NPC152722
0.975 High Similarity NPC37074
0.9667 High Similarity NPC469622
0.9667 High Similarity NPC189589
0.9667 High Similarity NPC298845
0.9658 High Similarity NPC276195
0.95 High Similarity NPC25817
0.9435 High Similarity NPC287780
0.9426 High Similarity NPC469621
0.9417 High Similarity NPC217854
0.9355 High Similarity NPC208769
0.9355 High Similarity NPC60756
0.9316 High Similarity NPC9248
0.9286 High Similarity NPC60982
0.9194 High Similarity NPC247146
0.9187 High Similarity NPC171533
0.906 High Similarity NPC142319
0.8917 High Similarity NPC228907
0.8779 High Similarity NPC104167
0.8692 High Similarity NPC132895
0.8692 High Similarity NPC49074
0.8647 High Similarity NPC212770
0.8647 High Similarity NPC98777
0.8629 High Similarity NPC57751
0.8615 High Similarity NPC299144
0.8615 High Similarity NPC470270
0.8615 High Similarity NPC162093
0.8571 High Similarity NPC59324
0.8571 High Similarity NPC65530
0.8538 High Similarity NPC166168
0.8529 High Similarity NPC252169
0.8504 High Similarity NPC12308
0.8496 Intermediate Similarity NPC164857
0.8496 Intermediate Similarity NPC242028
0.8496 Intermediate Similarity NPC203230
0.8485 Intermediate Similarity NPC13745
0.8485 Intermediate Similarity NPC48863
0.8485 Intermediate Similarity NPC251981
0.8485 Intermediate Similarity NPC107478
0.8462 Intermediate Similarity NPC124712
0.8456 Intermediate Similarity NPC475084
0.8456 Intermediate Similarity NPC469559
0.8456 Intermediate Similarity NPC189115
0.8433 Intermediate Similarity NPC195196
0.8421 Intermediate Similarity NPC470236
0.8417 Intermediate Similarity NPC227902
0.8409 Intermediate Similarity NPC69513
0.8409 Intermediate Similarity NPC215833
0.8403 Intermediate Similarity NPC247871
0.8387 Intermediate Similarity NPC214289
0.8385 Intermediate Similarity NPC248355
0.8385 Intermediate Similarity NPC166040
0.8385 Intermediate Similarity NPC307110
0.8382 Intermediate Similarity NPC469661
0.8376 Intermediate Similarity NPC232654
0.8374 Intermediate Similarity NPC151617
0.8374 Intermediate Similarity NPC76915
0.8357 Intermediate Similarity NPC478237
0.8357 Intermediate Similarity NPC175976
0.8346 Intermediate Similarity NPC87696
0.8333 Intermediate Similarity NPC25292
0.8333 Intermediate Similarity NPC473045
0.8308 Intermediate Similarity NPC40377
0.8308 Intermediate Similarity NPC302378
0.8295 Intermediate Similarity NPC233559
0.8291 Intermediate Similarity NPC307875
0.8273 Intermediate Similarity NPC475096
0.8271 Intermediate Similarity NPC115022
0.8271 Intermediate Similarity NPC294166
0.8268 Intermediate Similarity NPC105147
0.8268 Intermediate Similarity NPC228875
0.8268 Intermediate Similarity NPC126216
0.8261 Intermediate Similarity NPC473044
0.8258 Intermediate Similarity NPC248307
0.8258 Intermediate Similarity NPC65942
0.8254 Intermediate Similarity NPC205850
0.8244 Intermediate Similarity NPC218003
0.8231 Intermediate Similarity NPC140750
0.8214 Intermediate Similarity NPC99515
0.8214 Intermediate Similarity NPC190714
0.8214 Intermediate Similarity NPC125755
0.8209 Intermediate Similarity NPC310854
0.8195 Intermediate Similarity NPC252833
0.8195 Intermediate Similarity NPC26080
0.8195 Intermediate Similarity NPC85799
0.8195 Intermediate Similarity NPC165686
0.8195 Intermediate Similarity NPC303422
0.8189 Intermediate Similarity NPC226712
0.8182 Intermediate Similarity NPC213197
0.8182 Intermediate Similarity NPC80600
0.8182 Intermediate Similarity NPC472024
0.8182 Intermediate Similarity NPC262606
0.8175 Intermediate Similarity NPC210478
0.8169 Intermediate Similarity NPC206264
0.8169 Intermediate Similarity NPC313334
0.8169 Intermediate Similarity NPC212670
0.8168 Intermediate Similarity NPC198487
0.8162 Intermediate Similarity NPC138738
0.8162 Intermediate Similarity NPC470413
0.8156 Intermediate Similarity NPC39657
0.8148 Intermediate Similarity NPC238243
0.8148 Intermediate Similarity NPC185778
0.8143 Intermediate Similarity NPC161700
0.8143 Intermediate Similarity NPC277867
0.8134 Intermediate Similarity NPC25821
0.8134 Intermediate Similarity NPC6836
0.812 Intermediate Similarity NPC121376
0.811 Intermediate Similarity NPC269242
0.8106 Intermediate Similarity NPC97326
0.8106 Intermediate Similarity NPC26653
0.8106 Intermediate Similarity NPC270849
0.8102 Intermediate Similarity NPC100389
0.8088 Intermediate Similarity NPC165482
0.8088 Intermediate Similarity NPC186418
0.8088 Intermediate Similarity NPC197723
0.8088 Intermediate Similarity NPC3293
0.8088 Intermediate Similarity NPC25695
0.8088 Intermediate Similarity NPC172818
0.8088 Intermediate Similarity NPC138350
0.8088 Intermediate Similarity NPC40664
0.8074 Intermediate Similarity NPC130496
0.8074 Intermediate Similarity NPC470881
0.8074 Intermediate Similarity NPC188555
0.8074 Intermediate Similarity NPC35731
0.8074 Intermediate Similarity NPC170694
0.8071 Intermediate Similarity NPC469313
0.8071 Intermediate Similarity NPC76176
0.8071 Intermediate Similarity NPC138227
0.8071 Intermediate Similarity NPC168579
0.8071 Intermediate Similarity NPC297342
0.8069 Intermediate Similarity NPC78809
0.806 Intermediate Similarity NPC160991
0.806 Intermediate Similarity NPC16208
0.806 Intermediate Similarity NPC35932
0.806 Intermediate Similarity NPC7903
0.806 Intermediate Similarity NPC184447
0.8058 Intermediate Similarity NPC472714
0.8058 Intermediate Similarity NPC5262
0.8045 Intermediate Similarity NPC470079
0.8042 Intermediate Similarity NPC51328
0.8042 Intermediate Similarity NPC286235
0.8042 Intermediate Similarity NPC55158
0.8042 Intermediate Similarity NPC106138
0.8031 Intermediate Similarity NPC60589
0.8031 Intermediate Similarity NPC469708
0.8029 Intermediate Similarity NPC262328
0.8029 Intermediate Similarity NPC87777
0.8029 Intermediate Similarity NPC124149
0.8028 Intermediate Similarity NPC41844
0.8028 Intermediate Similarity NPC473480
0.8028 Intermediate Similarity NPC15538
0.8015 Intermediate Similarity NPC110677
0.8015 Intermediate Similarity NPC472337
0.8 Intermediate Similarity NPC37793
0.7985 Intermediate Similarity NPC9912
0.7985 Intermediate Similarity NPC469698
0.7985 Intermediate Similarity NPC475067
0.7985 Intermediate Similarity NPC472597
0.7985 Intermediate Similarity NPC473412
0.7972 Intermediate Similarity NPC130449
0.7972 Intermediate Similarity NPC248132
0.7972 Intermediate Similarity NPC96294
0.7969 Intermediate Similarity NPC198734
0.7969 Intermediate Similarity NPC469412
0.7956 Intermediate Similarity NPC37468
0.7956 Intermediate Similarity NPC52277
0.7956 Intermediate Similarity NPC157554
0.7956 Intermediate Similarity NPC199459
0.7956 Intermediate Similarity NPC472336
0.7956 Intermediate Similarity NPC177035
0.7956 Intermediate Similarity NPC472334
0.7955 Intermediate Similarity NPC216836
0.7943 Intermediate Similarity NPC473046
0.7943 Intermediate Similarity NPC118385
0.7943 Intermediate Similarity NPC187774
0.7943 Intermediate Similarity NPC472712
0.7943 Intermediate Similarity NPC472713
0.7941 Intermediate Similarity NPC187194
0.7939 Intermediate Similarity NPC470510
0.7929 Intermediate Similarity NPC157816
0.7914 Intermediate Similarity NPC106944
0.7914 Intermediate Similarity NPC202700
0.791 Intermediate Similarity NPC474491
0.791 Intermediate Similarity NPC220935
0.791 Intermediate Similarity NPC472338
0.7899 Intermediate Similarity NPC304152
0.7899 Intermediate Similarity NPC474282
0.7899 Intermediate Similarity NPC102904
0.7899 Intermediate Similarity NPC107551
0.7899 Intermediate Similarity NPC176051
0.7899 Intermediate Similarity NPC134260
0.7899 Intermediate Similarity NPC326797
0.7899 Intermediate Similarity NPC103976
0.7895 Intermediate Similarity NPC19694
0.7887 Intermediate Similarity NPC307466
0.7883 Intermediate Similarity NPC55040
0.7883 Intermediate Similarity NPC134968
0.7877 Intermediate Similarity NPC21902
0.7872 Intermediate Similarity NPC46092

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC221090 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.8189 Intermediate Similarity NPD1091 Approved
0.8169 Intermediate Similarity NPD1653 Approved
0.8034 Intermediate Similarity NPD291 Approved
0.7869 Intermediate Similarity NPD556 Approved
0.7704 Intermediate Similarity NPD3027 Phase 3
0.7664 Intermediate Similarity NPD1613 Approved
0.7664 Intermediate Similarity NPD1612 Clinical (unspecified phase)
0.7521 Intermediate Similarity NPD9296 Approved
0.7519 Intermediate Similarity NPD1408 Clinical (unspecified phase)
0.7518 Intermediate Similarity NPD3454 Phase 3
0.7372 Intermediate Similarity NPD1529 Clinical (unspecified phase)
0.7299 Intermediate Similarity NPD1530 Clinical (unspecified phase)
0.7265 Intermediate Similarity NPD9365 Approved
0.7197 Intermediate Similarity NPD7533 Approved
0.7197 Intermediate Similarity NPD7534 Approved
0.7188 Intermediate Similarity NPD7054 Approved
0.7143 Intermediate Similarity NPD7472 Approved
0.7143 Intermediate Similarity NPD7074 Phase 3
0.7143 Intermediate Similarity NPD1357 Approved
0.7122 Intermediate Similarity NPD3537 Clinical (unspecified phase)
0.7117 Intermediate Similarity NPD4338 Clinical (unspecified phase)
0.7103 Intermediate Similarity NPD7266 Discontinued
0.7094 Intermediate Similarity NPD9295 Approved
0.7019 Intermediate Similarity NPD3818 Discontinued
0.7009 Intermediate Similarity NPD9094 Approved
0.7008 Intermediate Similarity NPD290 Approved
0.6994 Remote Similarity NPD6797 Phase 2
0.6951 Remote Similarity NPD7251 Discontinued
0.6943 Remote Similarity NPD4381 Clinical (unspecified phase)
0.694 Remote Similarity NPD1548 Phase 1
0.6929 Remote Similarity NPD968 Approved
0.6914 Remote Similarity NPD7228 Approved
0.6909 Remote Similarity NPD7808 Phase 3
0.6899 Remote Similarity NPD6234 Discontinued
0.6892 Remote Similarity NPD6674 Discontinued
0.6892 Remote Similarity NPD1652 Phase 2
0.6884 Remote Similarity NPD2982 Phase 2
0.6884 Remote Similarity NPD2983 Phase 2
0.6879 Remote Similarity NPD4908 Phase 1
0.6875 Remote Similarity NPD9552 Approved
0.6871 Remote Similarity NPD521 Clinical (unspecified phase)
0.6861 Remote Similarity NPD3705 Approved
0.6861 Remote Similarity NPD1610 Phase 2
0.6842 Remote Similarity NPD191 Approved
0.6812 Remote Similarity NPD2981 Phase 2
0.6795 Remote Similarity NPD37 Approved
0.6795 Remote Similarity NPD1934 Approved
0.6794 Remote Similarity NPD228 Approved
0.6783 Remote Similarity NPD4907 Clinical (unspecified phase)
0.6772 Remote Similarity NPD4966 Approved
0.6772 Remote Similarity NPD4967 Phase 2
0.6772 Remote Similarity NPD4965 Approved
0.6765 Remote Similarity NPD1798 Approved
0.6765 Remote Similarity NPD1797 Approved
0.6752 Remote Similarity NPD2801 Approved
0.6742 Remote Similarity NPD7843 Approved
0.6739 Remote Similarity NPD422 Phase 1
0.6708 Remote Similarity NPD7199 Phase 2
0.6692 Remote Similarity NPD2684 Approved
0.669 Remote Similarity NPD3018 Phase 2
0.6687 Remote Similarity NPD6168 Clinical (unspecified phase)
0.6687 Remote Similarity NPD6166 Phase 2
0.6687 Remote Similarity NPD6167 Clinical (unspecified phase)
0.6667 Remote Similarity NPD4868 Clinical (unspecified phase)
0.6667 Remote Similarity NPD6410 Clinical (unspecified phase)
0.6667 Remote Similarity NPD7804 Clinical (unspecified phase)
0.6646 Remote Similarity NPD2393 Clinical (unspecified phase)
0.6645 Remote Similarity NPD5058 Phase 3
0.6643 Remote Similarity NPD4749 Approved
0.6642 Remote Similarity NPD9299 Approved
0.6641 Remote Similarity NPD9501 Approved
0.6618 Remote Similarity NPD1102 Approved
0.6618 Remote Similarity NPD1103 Approved
0.6593 Remote Similarity NPD6671 Approved
0.6593 Remote Similarity NPD7157 Approved
0.6582 Remote Similarity NPD3383 Approved
0.6582 Remote Similarity NPD3384 Approved
0.6582 Remote Similarity NPD3382 Approved
0.6573 Remote Similarity NPD2861 Phase 2
0.6552 Remote Similarity NPD6859 Clinical (unspecified phase)
0.6549 Remote Similarity NPD3827 Clinical (unspecified phase)
0.6548 Remote Similarity NPD6559 Discontinued
0.6531 Remote Similarity NPD5124 Phase 1
0.6531 Remote Similarity NPD5123 Clinical (unspecified phase)
0.6525 Remote Similarity NPD4379 Clinical (unspecified phase)
0.6524 Remote Similarity NPD7184 Clinical (unspecified phase)
0.6507 Remote Similarity NPD6233 Phase 2
0.6496 Remote Similarity NPD9089 Approved
0.6486 Remote Similarity NPD2224 Approved
0.6486 Remote Similarity NPD2223 Approved
0.6483 Remote Similarity NPD4625 Phase 3
0.6467 Remote Similarity NPD5844 Phase 1
0.6466 Remote Similarity NPD2671 Approved
0.6466 Remote Similarity NPD2673 Approved
0.6463 Remote Similarity NPD1558 Phase 1
0.646 Remote Similarity NPD3882 Suspended
0.6458 Remote Similarity NPD5266 Clinical (unspecified phase)
0.6458 Remote Similarity NPD2250 Discontinued
0.6456 Remote Similarity NPD4678 Approved
0.6456 Remote Similarity NPD4675 Approved
0.645 Remote Similarity NPD7240 Approved
0.645 Remote Similarity NPD7685 Pre-registration
0.6443 Remote Similarity NPD4536 Approved
0.6443 Remote Similarity NPD4537 Clinical (unspecified phase)
0.6443 Remote Similarity NPD4538 Approved
0.6438 Remote Similarity NPD2978 Approved
0.6438 Remote Similarity NPD2977 Approved
0.6438 Remote Similarity NPD8455 Phase 2
0.6429 Remote Similarity NPD915 Approved
0.6424 Remote Similarity NPD1375 Discontinued
0.642 Remote Similarity NPD7975 Clinical (unspecified phase)
0.6419 Remote Similarity NPD230 Phase 1
0.6416 Remote Similarity NPD6841 Approved
0.6416 Remote Similarity NPD6843 Phase 3
0.6416 Remote Similarity NPD6842 Approved
0.641 Remote Similarity NPD9093 Approved
0.6398 Remote Similarity NPD3817 Phase 2
0.6398 Remote Similarity NPD5402 Approved
0.6389 Remote Similarity NPD5647 Approved
0.6387 Remote Similarity NPD1511 Approved
0.6387 Remote Similarity NPD1774 Approved
0.6369 Remote Similarity NPD5403 Approved
0.6364 Remote Similarity NPD3787 Discontinued
0.6364 Remote Similarity NPD6190 Approved
0.6352 Remote Similarity NPD4380 Phase 2
0.6333 Remote Similarity NPD7097 Phase 1
0.6319 Remote Similarity NPD7075 Discontinued
0.6316 Remote Similarity NPD1550 Clinical (unspecified phase)
0.6316 Remote Similarity NPD1552 Clinical (unspecified phase)
0.6312 Remote Similarity NPD3496 Discontinued
0.6309 Remote Similarity NPD1933 Approved
0.6306 Remote Similarity NPD1512 Approved
0.6299 Remote Similarity NPD1878 Clinical (unspecified phase)
0.6296 Remote Similarity NPD6374 Clinical (unspecified phase)
0.6294 Remote Similarity NPD3685 Discontinued
0.6294 Remote Similarity NPD7993 Clinical (unspecified phase)
0.6291 Remote Similarity NPD5588 Approved
0.6291 Remote Similarity NPD5960 Phase 3
0.6282 Remote Similarity NPD7212 Phase 2
0.6282 Remote Similarity NPD6143 Clinical (unspecified phase)
0.6282 Remote Similarity NPD7213 Phase 3
0.6276 Remote Similarity NPD6917 Clinical (unspecified phase)
0.6275 Remote Similarity NPD1549 Phase 2
0.6267 Remote Similarity NPD6653 Approved
0.6266 Remote Similarity NPD6980 Clinical (unspecified phase)
0.6259 Remote Similarity NPD3180 Approved
0.6259 Remote Similarity NPD3179 Approved
0.625 Remote Similarity NPD8651 Approved
0.625 Remote Similarity NPD1551 Phase 2
0.6242 Remote Similarity NPD3620 Phase 2
0.6242 Remote Similarity NPD3619 Clinical (unspecified phase)
0.6242 Remote Similarity NPD5401 Approved
0.6241 Remote Similarity NPD5125 Phase 3
0.6241 Remote Similarity NPD1358 Approved
0.6241 Remote Similarity NPD5126 Approved
0.6235 Remote Similarity NPD1465 Phase 2
0.6234 Remote Similarity NPD5698 Clinical (unspecified phase)
0.6226 Remote Similarity NPD3687 Approved
0.6226 Remote Similarity NPD3686 Approved
0.6225 Remote Similarity NPD4978 Clinical (unspecified phase)
0.6216 Remote Similarity NPD1048 Approved
0.6213 Remote Similarity NPD3751 Discontinued
0.6209 Remote Similarity NPD3540 Phase 1
0.6207 Remote Similarity NPD8055 Clinical (unspecified phase)
0.6207 Remote Similarity NPD6362 Approved
0.6204 Remote Similarity NPD5283 Phase 1
0.6203 Remote Similarity NPD1940 Clinical (unspecified phase)
0.62 Remote Similarity NPD447 Suspended
0.6197 Remote Similarity NPD155 Clinical (unspecified phase)
0.6194 Remote Similarity NPD4628 Phase 3
0.6188 Remote Similarity NPD6055 Clinical (unspecified phase)
0.6188 Remote Similarity NPD7237 Clinical (unspecified phase)
0.6184 Remote Similarity NPD7033 Discontinued
0.6178 Remote Similarity NPD6799 Approved
0.6178 Remote Similarity NPD4357 Discontinued
0.6174 Remote Similarity NPD1726 Clinical (unspecified phase)
0.6173 Remote Similarity NPD6801 Discontinued
0.6169 Remote Similarity NPD2424 Discontinued
0.6164 Remote Similarity NPD1469 Clinical (unspecified phase)
0.6154 Remote Similarity NPD1535 Discovery
0.6154 Remote Similarity NPD5307 Clinical (unspecified phase)
0.6154 Remote Similarity NPD9088 Approved
0.6154 Remote Similarity NPD2219 Phase 1
0.6154 Remote Similarity NPD2677 Approved
0.6145 Remote Similarity NPD5494 Approved
0.6144 Remote Similarity NPD3539 Phase 1
0.6141 Remote Similarity NPD7680 Approved
0.6139 Remote Similarity NPD7447 Phase 1
0.6139 Remote Similarity NPD4123 Phase 3
0.6135 Remote Similarity NPD5772 Approved
0.6135 Remote Similarity NPD7096 Clinical (unspecified phase)
0.6135 Remote Similarity NPD5773 Approved
0.6133 Remote Similarity NPD4060 Phase 1
0.6131 Remote Similarity NPD821 Approved
0.6129 Remote Similarity NPD4236 Phase 3
0.6129 Remote Similarity NPD3060 Approved
0.6129 Remote Similarity NPD5177 Phase 3
0.6129 Remote Similarity NPD4237 Approved
0.6127 Remote Similarity NPD7549 Discontinued
0.6127 Remote Similarity NPD5846 Approved

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data