Structure

Physi-Chem Properties

Molecular Weight:  286.23
Volume:  329.688
LogP:  5.277
LogD:  4.282
LogS:  -5.771
# Rotatable Bonds:  2
TPSA:  20.23
# H-Bond Aceptor:  1
# H-Bond Donor:  1
# Rings:  3
# Heavy Atoms:  1

MedChem Properties

QED Drug-Likeness Score:  0.827
Synthetic Accessibility Score:  3.514
Fsp3:  0.7
Lipinski Rule-of-5:  Accepted
Pfizer Rule:  Rejected
GSK Rule:  Rejected
BMS Rule:  0
Golden Triangle Rule:  Accepted
Chelating Alert:  0
PAINS Alert:  0

ADMET Properties (ADMETlab2.0)

ADMET: Absorption

Caco-2 Permeability:  -4.649
MDCK Permeability:  1.4609381651098374e-05
Pgp-inhibitor:  0.753
Pgp-substrate:  0.001
Human Intestinal Absorption (HIA):  0.004
20% Bioavailability (F20%):  0.824
30% Bioavailability (F30%):  0.965

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB):  0.121
Plasma Protein Binding (PPB):  97.92756652832031%
Volume Distribution (VD):  1.654
Pgp-substrate:  2.1267902851104736%

ADMET: Metabolism

CYP1A2-inhibitor:  0.308
CYP1A2-substrate:  0.722
CYP2C19-inhibitor:  0.32
CYP2C19-substrate:  0.936
CYP2C9-inhibitor:  0.256
CYP2C9-substrate:  0.378
CYP2D6-inhibitor:  0.622
CYP2D6-substrate:  0.744
CYP3A4-inhibitor:  0.73
CYP3A4-substrate:  0.698

ADMET: Excretion

Clearance (CL):  9.143
Half-life (T1/2):  0.094

ADMET: Toxicity

hERG Blockers:  0.102
Human Hepatotoxicity (H-HT):  0.058
Drug-inuced Liver Injury (DILI):  0.048
AMES Toxicity:  0.015
Rat Oral Acute Toxicity:  0.175
Maximum Recommended Daily Dose:  0.465
Skin Sensitization:  0.646
Carcinogencity:  0.035
Eye Corrosion:  0.044
Eye Irritation:  0.76
Respiratory Toxicity:  0.104

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Biological Activities  
Similar NPs/Drugs  

  Natural Product: NPC220596

Natural Product ID:  NPC220596
Common Name*:   Pomiferin A
IUPAC Name:   [(1R,4aS,10aR)-1,4a-dimethyl-7-propan-2-yl-2,3,4,9,10,10a-hexahydrophenanthren-1-yl]methanol
Synonyms:  
Standard InCHIKey:  WSKGRAGZAQRSED-SLFFLAALSA-N
Standard InCHI:  InChI=1S/C20H30O/c1-14(2)15-6-8-17-16(12-15)7-9-18-19(3,13-21)10-5-11-20(17,18)4/h6,8,12,14,18,21H,5,7,9-11,13H2,1-4H3/t18-,19-,20+/m0/s1
SMILES:  OC[C@]1(C)CCC[C@]2([C@H]1CCc1c2ccc(c1)C(C)C)C
Synthetic Gene Cluster:   n.a.
ChEMBL Identifier:   CHEMBL12799
PubChem CID:   15586718
Chemical Classification**:  
  • CHEMONTID:0000000 [Organic compounds]
    • [CHEMONTID:0000012] Lipids and lipid-like molecules
      • [CHEMONTID:0000259] Prenol lipids
        • [CHEMONTID:0001551] Diterpenoids

*Note: the InCHIKey will be temporarily assigned as the "Common Name" if no IUPAC name or alternative short name is available.
**Note: the Chemical Classification was calculated by NPClassifier Version 1.5. Reference: PMID:34662515.

  Species Source

Organism ID Organism Name Taxonomy Level Family SuperKingdom Isolation Part Collection Location Collection Time Reference
NPO319 Citrus limon Species Rutaceae Eukaryota n.a. n.a. n.a. DOI[10.1016/S0031-9422(99)00119-3]
NPO21179 Streptomyces griseoaurantiacus Species Streptomycetaceae Bacteria n.a. n.a. n.a. PMID[10048567]
NPO319 Citrus limon Species Rutaceae Eukaryota n.a. fruit n.a. PMID[10606547]
NPO7869 Peritassa campestris Species Celastraceae Eukaryota n.a. root n.a. PMID[11738408]
NPO33152 calceolaria pinifolia Species Calceolariaceae Eukaryota aerial part 46 km west of Puesto de Gendarmeria in the province of San Juan, Argentina (3021 S; 6940 W) 1997-Jan PMID[12608857]
NPO8513 Pseudomonas fluorescens Species Pseudomonadaceae Bacteria n.a. n.a. n.a. PMID[15826166]
NPO8513 Pseudomonas fluorescens Species Pseudomonadaceae Bacteria n.a. n.a. n.a. PMID[17924666]
NPO28799 Hyptis suaveolens Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[19299148]
NPO2882 Abies georgei Species Pinaceae Eukaryota aerial parts Zhongdian city, Yunnan Province of China n.a. PMID[20022253]
NPO21014 Brucea antidysenterica Species Simaroubaceae Eukaryota n.a. n.a. n.a. PMID[2089121]
NPO8513 Pseudomonas fluorescens Species Pseudomonadaceae Bacteria n.a. n.a. n.a. PMID[20979386]
NPO8513 Pseudomonas fluorescens Species Pseudomonadaceae Bacteria n.a. n.a. n.a. PMID[23688329]
NPO8513 Pseudomonas fluorescens Species Pseudomonadaceae Bacteria n.a. n.a. n.a. PMID[23897464]
NPO28799 Hyptis suaveolens Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[26178912]
NPO22372 Callicarpa bodinieri Species Lamiaceae Eukaryota n.a. n.a. n.a. PMID[29578342]
NPO21014 Brucea antidysenterica Species Simaroubaceae Eukaryota n.a. n.a. n.a. PMID[3379416]
NPO21014 Brucea antidysenterica Species Simaroubaceae Eukaryota n.a. n.a. n.a. PMID[3443857]
NPO21014 Brucea antidysenterica Species Simaroubaceae Eukaryota n.a. n.a. n.a. PMID[3760882]
NPO21014 Brucea antidysenterica Species Simaroubaceae Eukaryota n.a. n.a. n.a. PMID[3841557]
NPO21014 Brucea antidysenterica Species Simaroubaceae Eukaryota n.a. n.a. n.a. PMID[7288443]
NPO8513 Pseudomonas fluorescens Species Pseudomonadaceae Bacteria n.a. n.a. n.a. PMID[7798954]
NPO21014 Brucea antidysenterica Species Simaroubaceae Eukaryota n.a. xylem n.a. PMID[8133299]
NPO21014 Brucea antidysenterica Species Simaroubaceae Eukaryota n.a. n.a. n.a. PMID[8133299]
NPO8513 Pseudomonas fluorescens Species Pseudomonadaceae Bacteria n.a. n.a. n.a. PMID[8626242]
NPO21014 Brucea antidysenterica Species Simaroubaceae Eukaryota n.a. n.a. n.a. PMID[8691212]
NPO22470 Corynebacterium glutamicum Species Corynebacteriaceae Bacteria n.a. n.a. n.a. Database[Article]
NPO319 Citrus limon Species Rutaceae Eukaryota Plant n.a. n.a. Database[FooDB]
NPO319 Citrus limon Species Rutaceae Eukaryota n.a. n.a. Database[FooDB]
NPO319 Citrus limon Species Rutaceae Eukaryota n.a. n.a. Database[FooDB]
NPO319 Citrus limon Species Rutaceae Eukaryota Essential Oil n.a. n.a. Database[FooDB]
NPO319 Citrus limon Species Rutaceae Eukaryota Flower n.a. n.a. Database[FooDB]
NPO319 Citrus limon Species Rutaceae Eukaryota Fruit n.a. n.a. Database[FooDB]
NPO319 Citrus limon Species Rutaceae Eukaryota Leaf Essent. Oil n.a. n.a. Database[FooDB]
NPO28799 Hyptis suaveolens Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO319 Citrus limon Species Rutaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO18881 Loropetalum chinense Species Hamamelidaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO21014 Brucea antidysenterica Species Simaroubaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO26583 Oxytropis myriophylla Species Fabaceae Eukaryota n.a. n.a. n.a. Database[HerDing]
NPO319 Citrus limon Species Rutaceae Eukaryota n.a. n.a. Database[Phenol-Explorer]
NPO319 Citrus limon Species Rutaceae Eukaryota Fruits n.a. Database[Phenol-Explorer]
NPO21014 Brucea antidysenterica Species Simaroubaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO14307 Rhizopus oryzae Species Rhizopodaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO26583 Oxytropis myriophylla Species Fabaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO28799 Hyptis suaveolens Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO319 Citrus limon Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO18881 Loropetalum chinense Species Hamamelidaceae Eukaryota n.a. n.a. n.a. Database[TCMID]
NPO18881 Loropetalum chinense Species Hamamelidaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO319 Citrus limon Species Rutaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO28799 Hyptis suaveolens Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[TCM_Taiwan]
NPO8086 Lepechinia caulescens Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23194 Berberis beaniana Species Berberidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21704 Papaver suaveolens Species Papaveraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22530 Vigna luteola Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO19502 Squamopappus skutchii Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO1325 Bonnemaisonia asparagoides Species Bonnemaisoniaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22470 Corynebacterium glutamicum Species Corynebacteriaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO21165 Phagnalon atlanticum Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO195 Maprounea guianensis Species Euphorbiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7163 Atractylis japonica Species Asteraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO18881 Loropetalum chinense Species Hamamelidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO17292 Asparagus racemosus Species Asparagaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22147 Goniothalamus macrophyllus Species Annonaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO3169 Guarea guidonia Species Meliaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO26583 Oxytropis myriophylla Species Fabaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO23157 Wigandia kunthii Species Namaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21014 Brucea antidysenterica Species Simaroubaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO21894 Psychotria granadensis Species Rubiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO16067.1 Pseudotsuga sinensis var. wilsoniana Varieties Pinaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22968 Elaeocarpus serratus Species Elaeocarpaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6199 Rhododendron macrophyllum Species Ericaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO319 Citrus limon Species Rutaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO14307 Rhizopus oryzae Species Rhizopodaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO15469 Myodocarpus gracilis Species Myodocarpaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO28466 Torreya nucifera Species Taxaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO6953.1 Aconitum sachalinense subsp. yezoense Subspecies Ranunculaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO7869 Peritassa campestris Species Celastraceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO20425 Epimedium macranthum Species Berberidaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO13308 Polycitor adriaticus Species Polycitoridae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO22372 Callicarpa bodinieri Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]
NPO8513 Pseudomonas fluorescens Species Pseudomonadaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO21179 Streptomyces griseoaurantiacus Species Streptomycetaceae Bacteria n.a. n.a. n.a. Database[UNPD]
NPO20619 Ougeinia dalbergioides n.a. n.a. n.a. n.a. n.a. n.a. Database[UNPD]
NPO28799 Hyptis suaveolens Species Lamiaceae Eukaryota n.a. n.a. n.a. Database[UNPD]

☑ Note for Reference:
In addition to directly collecting NP source organism data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated them from below databases:
UNPD: Universal Natural Products Database [PMID: 23638153].
StreptomeDB: a database of streptomycetes natural products [PMID: 33051671].
TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine [PMID: 26156871].
TCM@Taiwan: a Traditional Chinese Medicine database [PMID: 21253603].
TCMID: a Traditional Chinese Medicine database [PMID: 29106634].
TCMSP: The traditional Chinese medicine systems pharmacology database and analysis platform [PMID: 24735618].
HerDing: a herb recommendation system to treat diseases using genes and chemicals [PMID: 26980517].
MetaboLights: a metabolomics database [PMID: 27010336].
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  NP Quantity Composition/Concentration

Organism ID NP ID Organism Material Preparation Organism Part NP Quantity (Standard) NP Quantity (Minimum) NP Quantity (Maximum) Quantity Unit Reference

☑ Note for Reference:
In addition to directly collecting NP quantitative data from primary literature (where reference will provided as NCBI PMID or DOI links), NPASS also integrated NP quantitative records for specific NP domains (e.g., NPS from foods or herbs) from domain-specific databases. These databases include:
DUKE: Dr. Duke's Phytochemical and Ethnobotanical Databases.
PHENOL EXPLORER: is the first comprehensive database on polyphenol content in foods [PMID: 24103452], its homepage can be accessed at here.
FooDB: a database of constituents, chemistry and biology of food species [www.foodb.ca].

  Biological Activity

Target ID Target Type Target Name Target Organism Activity Type Activity Relation Value Unit Reference
NPT189 Cell Line Vero Chlorocebus aethiops IC50 = 17.0 ug.mL-1 PMID[521857]
NPT114 Cell Line LoVo Homo sapiens IC50 = 9.2 ug.mL-1 PMID[521859]
NPT113 Cell Line RAW264.7 Mus musculus IC50 > 100.0 ug.mL-1 PMID[521859]
NPT189 Cell Line Vero Chlorocebus aethiops IC50 = 38.0 ug.mL-1 PMID[521860]
NPT165 Cell Line HeLa Homo sapiens IC50 = 13.0 ug.mL-1 PMID[521860]
NPT15 Cell Line Jurkat Homo sapiens IC50 = 9.7 ug.mL-1 PMID[521860]
NPT189 Cell Line Vero Chlorocebus aethiops Ratio IC50 = 2.9 n.a. PMID[521860]
NPT189 Cell Line Vero Chlorocebus aethiops Ratio IC50 = 3.9 n.a. PMID[521860]
NPT189 Cell Line Vero Chlorocebus aethiops CC100 = 50.0 ug ml-1 PMID[521860]
NPT3174 Individual Protein Lysyl-tRNA synthetase Homo sapiens IC50 = 46.4 nM PMID[521863]
NPT165 Cell Line HeLa Homo sapiens IC50 = 15700.0 nM PMID[521864]
NPT79 Organism Bacillus subtilis Bacillus subtilis MIC = 8.0 ug.mL-1 PMID[521858]
NPT16 Organism Staphylococcus aureus Staphylococcus aureus MIC = 4.0 ug.mL-1 PMID[521858]
NPT19 Organism Escherichia coli Escherichia coli MIC > 128.0 ug.mL-1 PMID[521858]
NPT20529 NON-MOLECULAR NON-PROTEIN TARGET n.a. IC50 > 25.0 ug.mL-1 PMID[521859]
NPT2 Others Unspecified IC50 > 100.0 ug.mL-1 PMID[521859]
NPT6 Organism Plasmodium falciparum Plasmodium falciparum IC50 = 25600.0 nM PMID[521861]
NPT27 Others Unspecified IC50 = 28000.0 nM PMID[521861]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda Activity = 30.0 % PMID[521862]
NPT1077 Organism Drosophila melanogaster Drosophila melanogaster LC50 = 16.1 ug.mL-1 PMID[521862]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda Growth_index = 0.71 n.a. PMID[521862]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda Growth_index = 0.75 n.a. PMID[521862]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda Growth_index = 0.96 n.a. PMID[521862]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda Growth_index = 0.98 n.a. PMID[521862]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda Growth_index = 0.99 n.a. PMID[521862]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda Growth_index = 0.54 n.a. PMID[521862]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda Growth_index = 0.91 n.a. PMID[521862]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda Growth_index = 0.93 n.a. PMID[521862]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda Growth_index = 0.97 n.a. PMID[521862]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda Inhibition = 0.0 % PMID[521862]
NPT1077 Organism Drosophila melanogaster Drosophila melanogaster mortality = 82.9 % PMID[521862]
NPT1077 Organism Drosophila melanogaster Drosophila melanogaster mortality = 77.0 % PMID[521862]
NPT1077 Organism Drosophila melanogaster Drosophila melanogaster mortality = 67.0 % PMID[521862]
NPT1077 Organism Drosophila melanogaster Drosophila melanogaster mortality = 13.3 % PMID[521862]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda LD50 = 17.5 ug ml-1 PMID[521862]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda Activity = 0.0 % PMID[521862]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda Activity = 3.9 % PMID[521862]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda Activity = 6.9 % PMID[521862]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda Activity = 51.0 % PMID[521862]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda Activity = 69.1 % PMID[521862]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda Activity = 75.0 % PMID[521862]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda mortality = 44.0 % PMID[521862]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda mortality = 25.0 % PMID[521862]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda mortality = 15.0 % PMID[521862]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda mortality = 5.6 % PMID[521862]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda mortality = 4.16 % PMID[521862]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda Activity = 37.4 % PMID[521862]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda Activity = 41.8 % PMID[521862]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda Activity = 59.4 % PMID[521862]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda Activity = 85.6 % PMID[521862]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda Activity = 33.6 % PMID[521862]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda Activity = 38.2 % PMID[521862]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda Activity = 50.6 % PMID[521862]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda Activity = 65.8 % PMID[521862]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda Activity = 93.5 % PMID[521862]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda mortality = 83.3 % PMID[521862]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda mortality = 63.0 % PMID[521862]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda mortality = 46.8 % PMID[521862]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda mortality = 41.7 % PMID[521862]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda mortality = 33.3 % PMID[521862]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda Activity = 33.3 % PMID[521862]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda Activity = 42.5 % PMID[521862]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda Activity = 64.2 % PMID[521862]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda Activity = 79.0 % PMID[521862]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda Activity = 88.3 % PMID[521862]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda Activity = 41.3 % PMID[521862]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda Activity = 42.3 % PMID[521862]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda Activity = 56.2 % PMID[521862]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda Activity = 81.3 % PMID[521862]
NPT1192 Organism Spodoptera frugiperda Spodoptera frugiperda Activity = 89.5 % PMID[521862]

☑ Note for Activity Records:
☉ The quantitative biological activities were primarily integrated from ChEMBL (Version-30) database and were also directly collected from PubMed literature. PubMed PMID was provided as the reference link for each activity record.

  Chemically structural similarity: I. Similar Active Natural Products in NPASS

Top-200 similar NPs were calculated against the active-NP-set (includes 4,3285 NPs with experimentally-derived bioactivity available in NPASS)

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules. Tc lies between [0, 1] where '1' indicates the highest similarity. What is Tanimoto coefficient

●  The left chart: Distribution of similarity level between NPC220596 and all remaining natural products in the NPASS database.
●  The right table: Most similar natural products (Tc>=0.56 or Top200).

Similarity Score Similarity Level Natural Product ID
0.9444 High Similarity NPC324602
0.8947 High Similarity NPC19856
0.8854 High Similarity NPC56168
0.8763 High Similarity NPC471186
0.8763 High Similarity NPC243601
0.8673 High Similarity NPC142326
0.8673 High Similarity NPC94751
0.8586 High Similarity NPC27252
0.8586 High Similarity NPC472979
0.8542 High Similarity NPC128248
0.8542 High Similarity NPC133809
0.8542 High Similarity NPC136810
0.85 High Similarity NPC64642
0.85 High Similarity NPC472982
0.85 High Similarity NPC149455
0.84 Intermediate Similarity NPC472980
0.84 Intermediate Similarity NPC21929
0.8353 Intermediate Similarity NPC249018
0.8353 Intermediate Similarity NPC3190
0.8333 Intermediate Similarity NPC265513
0.8252 Intermediate Similarity NPC471188
0.8252 Intermediate Similarity NPC471189
0.8247 Intermediate Similarity NPC221825
0.8191 Intermediate Similarity NPC314690
0.8191 Intermediate Similarity NPC128645
0.8163 Intermediate Similarity NPC225079
0.8161 Intermediate Similarity NPC159661
0.8085 Intermediate Similarity NPC125226
0.8068 Intermediate Similarity NPC164449
0.8068 Intermediate Similarity NPC184030
0.8046 Intermediate Similarity NPC224544
0.8041 Intermediate Similarity NPC226041
0.8019 Intermediate Similarity NPC215419
0.8 Intermediate Similarity NPC470253
0.798 Intermediate Similarity NPC289117
0.7961 Intermediate Similarity NPC475006
0.7935 Intermediate Similarity NPC93843
0.7895 Intermediate Similarity NPC79917
0.7889 Intermediate Similarity NPC121478
0.7889 Intermediate Similarity NPC73637
0.7882 Intermediate Similarity NPC54269
0.7872 Intermediate Similarity NPC298115
0.7872 Intermediate Similarity NPC199567
0.787 Intermediate Similarity NPC92
0.787 Intermediate Similarity NPC212891
0.787 Intermediate Similarity NPC472862
0.787 Intermediate Similarity NPC469663
0.781 Intermediate Similarity NPC95126
0.781 Intermediate Similarity NPC475002
0.7778 Intermediate Similarity NPC192948
0.7778 Intermediate Similarity NPC35797
0.7765 Intermediate Similarity NPC208302
0.7742 Intermediate Similarity NPC243166
0.7706 Intermediate Similarity NPC242764
0.7706 Intermediate Similarity NPC38893
0.7706 Intermediate Similarity NPC219112
0.7706 Intermediate Similarity NPC308311
0.7706 Intermediate Similarity NPC477137
0.7706 Intermediate Similarity NPC105141
0.7692 Intermediate Similarity NPC283012
0.7692 Intermediate Similarity NPC475199
0.7685 Intermediate Similarity NPC221275
0.7685 Intermediate Similarity NPC268160
0.7684 Intermediate Similarity NPC1793
0.767 Intermediate Similarity NPC471133
0.7664 Intermediate Similarity NPC93287
0.7658 Intermediate Similarity NPC476645
0.7642 Intermediate Similarity NPC133308
0.7636 Intermediate Similarity NPC304510
0.7636 Intermediate Similarity NPC45794
0.7636 Intermediate Similarity NPC477136
0.7636 Intermediate Similarity NPC172219
0.7634 Intermediate Similarity NPC99482
0.7624 Intermediate Similarity NPC469481
0.7624 Intermediate Similarity NPC245927
0.7615 Intermediate Similarity NPC147179
0.7615 Intermediate Similarity NPC9274
0.7609 Intermediate Similarity NPC172984
0.7589 Intermediate Similarity NPC234337
0.7589 Intermediate Similarity NPC183339
0.7589 Intermediate Similarity NPC133389
0.7586 Intermediate Similarity NPC108218
0.7582 Intermediate Similarity NPC242628
0.7573 Intermediate Similarity NPC472221
0.7573 Intermediate Similarity NPC315794
0.7573 Intermediate Similarity NPC472222
0.757 Intermediate Similarity NPC260323
0.757 Intermediate Similarity NPC176279
0.7568 Intermediate Similarity NPC254233
0.7568 Intermediate Similarity NPC471671
0.7545 Intermediate Similarity NPC308828
0.7527 Intermediate Similarity NPC267704
0.7523 Intermediate Similarity NPC195922
0.75 Intermediate Similarity NPC469644
0.75 Intermediate Similarity NPC307195
0.75 Intermediate Similarity NPC202015
0.75 Intermediate Similarity NPC250323
0.7477 Intermediate Similarity NPC222968
0.7477 Intermediate Similarity NPC141782
0.7477 Intermediate Similarity NPC80605
0.7477 Intermediate Similarity NPC132720
0.7477 Intermediate Similarity NPC323440
0.7476 Intermediate Similarity NPC247976
0.7474 Intermediate Similarity NPC60408
0.7473 Intermediate Similarity NPC315216
0.7456 Intermediate Similarity NPC293831
0.7456 Intermediate Similarity NPC369
0.7455 Intermediate Similarity NPC469719
0.7451 Intermediate Similarity NPC264728
0.7447 Intermediate Similarity NPC474354
0.7431 Intermediate Similarity NPC471721
0.7426 Intermediate Similarity NPC120393
0.7423 Intermediate Similarity NPC26224
0.7419 Intermediate Similarity NPC477770
0.7411 Intermediate Similarity NPC48342
0.7411 Intermediate Similarity NPC469609
0.7411 Intermediate Similarity NPC164649
0.7407 Intermediate Similarity NPC111108
0.7407 Intermediate Similarity NPC280789
0.7407 Intermediate Similarity NPC322753
0.74 Intermediate Similarity NPC469893
0.74 Intermediate Similarity NPC219573
0.74 Intermediate Similarity NPC185208
0.7391 Intermediate Similarity NPC182333
0.7391 Intermediate Similarity NPC273336
0.7386 Intermediate Similarity NPC96835
0.7386 Intermediate Similarity NPC258492
0.7368 Intermediate Similarity NPC474211
0.7358 Intermediate Similarity NPC112903
0.7356 Intermediate Similarity NPC39799
0.7356 Intermediate Similarity NPC280135
0.7356 Intermediate Similarity NPC193578
0.7356 Intermediate Similarity NPC1008
0.7356 Intermediate Similarity NPC226999
0.7356 Intermediate Similarity NPC135433
0.7356 Intermediate Similarity NPC158028
0.7356 Intermediate Similarity NPC87099
0.734 Intermediate Similarity NPC304538
0.734 Intermediate Similarity NPC168855
0.7339 Intermediate Similarity NPC228425
0.7339 Intermediate Similarity NPC143768
0.7333 Intermediate Similarity NPC117115
0.7328 Intermediate Similarity NPC77691
0.7327 Intermediate Similarity NPC469891
0.7327 Intermediate Similarity NPC469890
0.7327 Intermediate Similarity NPC469892
0.7315 Intermediate Similarity NPC13482
0.7303 Intermediate Similarity NPC189371
0.7294 Intermediate Similarity NPC6107
0.729 Intermediate Similarity NPC11554
0.7282 Intermediate Similarity NPC266343
0.7273 Intermediate Similarity NPC169616
0.7273 Intermediate Similarity NPC715
0.7264 Intermediate Similarity NPC83409
0.7264 Intermediate Similarity NPC185763
0.7264 Intermediate Similarity NPC100767
0.7257 Intermediate Similarity NPC318173
0.7257 Intermediate Similarity NPC154030
0.7253 Intermediate Similarity NPC66270
0.7253 Intermediate Similarity NPC245896
0.7248 Intermediate Similarity NPC77772
0.7241 Intermediate Similarity NPC152946
0.7241 Intermediate Similarity NPC72670
0.7232 Intermediate Similarity NPC470820
0.7232 Intermediate Similarity NPC471668
0.7217 Intermediate Similarity NPC472981
0.7217 Intermediate Similarity NPC328504
0.7212 Intermediate Similarity NPC51015
0.7196 Intermediate Similarity NPC151477
0.7182 Intermediate Similarity NPC46940
0.7179 Intermediate Similarity NPC307139
0.7179 Intermediate Similarity NPC471187
0.7176 Intermediate Similarity NPC113837
0.7176 Intermediate Similarity NPC289915
0.7176 Intermediate Similarity NPC178527
0.7172 Intermediate Similarity NPC141607
0.7172 Intermediate Similarity NPC187725
0.7172 Intermediate Similarity NPC86987
0.7157 Intermediate Similarity NPC239185
0.7155 Intermediate Similarity NPC142198
0.7155 Intermediate Similarity NPC77569
0.7143 Intermediate Similarity NPC5486
0.7143 Intermediate Similarity NPC253681
0.713 Intermediate Similarity NPC260832
0.713 Intermediate Similarity NPC135467
0.713 Intermediate Similarity NPC472680
0.713 Intermediate Similarity NPC472679
0.7129 Intermediate Similarity NPC172925
0.7128 Intermediate Similarity NPC99394
0.7128 Intermediate Similarity NPC87299
0.7128 Intermediate Similarity NPC103326
0.7128 Intermediate Similarity NPC329319
0.7128 Intermediate Similarity NPC230068
0.7126 Intermediate Similarity NPC246822
0.7126 Intermediate Similarity NPC213570
0.7126 Intermediate Similarity NPC139416
0.7119 Intermediate Similarity NPC181334
0.7117 Intermediate Similarity NPC196673
0.7115 Intermediate Similarity NPC476993
0.7103 Intermediate Similarity NPC271274

  Chemically structural similarity: II. Similar Clinical/Approved Drugs

Similarity level is defined by Tanimoto coefficient (Tc) between two molecules.

●  The left chart: Distribution of similarity level between NPC220596 and all drugs/candidates.
●  The right table: Most similar clinical/approved drugs (Tc>=0.56 or Top200).

Similarity Score Similarity Level Drug ID Developmental Stage
0.8182 Intermediate Similarity NPD5700 Clinical (unspecified phase)
0.7477 Intermediate Similarity NPD4141 Clinical (unspecified phase)
0.7475 Intermediate Similarity NPD6049 Phase 2
0.7475 Intermediate Similarity NPD4814 Discontinued
0.7475 Intermediate Similarity NPD6048 Clinical (unspecified phase)
0.7431 Intermediate Similarity NPD4869 Clinical (unspecified phase)
0.7411 Intermediate Similarity NPD3091 Approved
0.7374 Intermediate Similarity NPD3719 Approved
0.7374 Intermediate Similarity NPD3718 Approved
0.7364 Intermediate Similarity NPD5951 Approved
0.7281 Intermediate Similarity NPD3095 Discontinued
0.7273 Intermediate Similarity NPD1088 Approved
0.7257 Intermediate Similarity NPD7741 Discontinued
0.7216 Intermediate Similarity NPD1101 Approved
0.7212 Intermediate Similarity NPD4719 Phase 2
0.7196 Intermediate Similarity NPD2342 Discontinued
0.7158 Intermediate Similarity NPD4544 Approved
0.7157 Intermediate Similarity NPD3495 Discontinued
0.7155 Intermediate Similarity NPD3092 Approved
0.7129 Intermediate Similarity NPD3772 Phase 3
0.7129 Intermediate Similarity NPD688 Clinical (unspecified phase)
0.7071 Intermediate Similarity NPD1086 Approved
0.7071 Intermediate Similarity NPD1089 Approved
0.7071 Intermediate Similarity NPD1090 Approved
0.7027 Intermediate Similarity NPD6858 Approved
0.7027 Intermediate Similarity NPD7094 Approved
0.7027 Intermediate Similarity NPD7635 Approved
0.7019 Intermediate Similarity NPD2066 Phase 3
0.7018 Intermediate Similarity NPD7610 Discontinued
0.6991 Remote Similarity NPD4198 Discontinued
0.699 Remote Similarity NPD2487 Clinical (unspecified phase)
0.6983 Remote Similarity NPD7163 Clinical (unspecified phase)
0.6983 Remote Similarity NPD5126 Approved
0.6983 Remote Similarity NPD7725 Approved
0.6983 Remote Similarity NPD5125 Phase 3
0.6983 Remote Similarity NPD4199 Phase 3
0.697 Remote Similarity NPD800 Approved
0.6957 Remote Similarity NPD2227 Clinical (unspecified phase)
0.6957 Remote Similarity NPD9294 Approved
0.6917 Remote Similarity NPD3094 Phase 2
0.6907 Remote Similarity NPD5734 Clinical (unspecified phase)
0.6893 Remote Similarity NPD1989 Approved
0.6893 Remote Similarity NPD2895 Discontinued
0.6875 Remote Similarity NPD3971 Phase 1
0.6863 Remote Similarity NPD5122 Clinical (unspecified phase)
0.6863 Remote Similarity NPD845 Approved
0.6863 Remote Similarity NPD1409 Phase 3
0.6857 Remote Similarity NPD3020 Approved
0.6842 Remote Similarity NPD3317 Approved
0.6838 Remote Similarity NPD3019 Approved
0.6838 Remote Similarity NPD4059 Approved
0.6832 Remote Similarity NPD1239 Approved
0.6827 Remote Similarity NPD1566 Phase 3
0.6827 Remote Similarity NPD1875 Phase 1
0.6827 Remote Similarity NPD1565 Approved
0.6827 Remote Similarity NPD1564 Approved
0.6822 Remote Similarity NPD1931 Clinical (unspecified phase)
0.6822 Remote Similarity NPD1930 Approved
0.6822 Remote Similarity NPD1929 Approved
0.6814 Remote Similarity NPD6010 Discontinued
0.681 Remote Similarity NPD7009 Phase 2
0.68 Remote Similarity NPD5347 Phase 2
0.68 Remote Similarity NPD5346 Phase 2
0.6796 Remote Similarity NPD1432 Clinical (unspecified phase)
0.6796 Remote Similarity NPD1693 Approved
0.6783 Remote Similarity NPD7325 Clinical (unspecified phase)
0.6768 Remote Similarity NPD1087 Approved
0.6765 Remote Similarity NPD752 Approved
0.6754 Remote Similarity NPD2629 Approved
0.6752 Remote Similarity NPD1710 Approved
0.6733 Remote Similarity NPD3673 Approved
0.6733 Remote Similarity NPD3672 Approved
0.6731 Remote Similarity NPD3093 Approved
0.6731 Remote Similarity NPD1809 Phase 2
0.6729 Remote Similarity NPD4119 Approved
0.6724 Remote Similarity NPD7522 Discontinued
0.6723 Remote Similarity NPD5618 Discontinued
0.67 Remote Similarity NPD531 Approved
0.6699 Remote Similarity NPD3980 Approved
0.6699 Remote Similarity NPD719 Approved
0.6699 Remote Similarity NPD3982 Approved
0.6699 Remote Similarity NPD2878 Approved
0.6699 Remote Similarity NPD720 Approved
0.6695 Remote Similarity NPD2932 Approved
0.6695 Remote Similarity NPD3412 Clinical (unspecified phase)
0.6694 Remote Similarity NPD7008 Discontinued
0.6694 Remote Similarity NPD5952 Clinical (unspecified phase)
0.6667 Remote Similarity NPD5598 Approved
0.6667 Remote Similarity NPD288 Approved
0.6667 Remote Similarity NPD5765 Approved
0.6667 Remote Similarity NPD5736 Approved
0.6667 Remote Similarity NPD226 Approved
0.6667 Remote Similarity NPD5597 Approved
0.6638 Remote Similarity NPD6775 Clinical (unspecified phase)
0.6636 Remote Similarity NPD6685 Approved
0.6636 Remote Similarity NPD1616 Discontinued
0.6636 Remote Similarity NPD6354 Discontinued
0.66 Remote Similarity NPD4793 Discontinued
0.6585 Remote Similarity NPD4624 Approved
0.6577 Remote Similarity NPD4095 Clinical (unspecified phase)
0.6574 Remote Similarity NPD1932 Approved
0.6574 Remote Similarity NPD4817 Approved
0.6574 Remote Similarity NPD4818 Approved
0.6571 Remote Similarity NPD844 Approved
0.6571 Remote Similarity NPD2859 Approved
0.6571 Remote Similarity NPD2860 Approved
0.6552 Remote Similarity NPD675 Discontinued
0.6545 Remote Similarity NPD5717 Approved
0.6538 Remote Similarity NPD1563 Approved
0.6535 Remote Similarity NPD4140 Approved
0.6525 Remote Similarity NPD5511 Discontinued
0.6518 Remote Similarity NPD2329 Discontinued
0.6518 Remote Similarity NPD6831 Clinical (unspecified phase)
0.6514 Remote Similarity NPD4231 Approved
0.6514 Remote Similarity NPD6647 Phase 2
0.6514 Remote Similarity NPD4229 Approved
0.6505 Remote Similarity NPD530 Approved
0.65 Remote Similarity NPD3026 Approved
0.65 Remote Similarity NPD7457 Clinical (unspecified phase)
0.65 Remote Similarity NPD3023 Approved
0.6484 Remote Similarity NPD5735 Approved
0.6481 Remote Similarity NPD4760 Clinical (unspecified phase)
0.6476 Remote Similarity NPD2933 Approved
0.6476 Remote Similarity NPD2934 Approved
0.6475 Remote Similarity NPD5327 Phase 3
0.6471 Remote Similarity NPD3025 Approved
0.6471 Remote Similarity NPD3024 Approved
0.6471 Remote Similarity NPD4093 Discontinued
0.6457 Remote Similarity NPD7961 Discontinued
0.6457 Remote Similarity NPD6663 Approved
0.6455 Remote Similarity NPD5909 Discontinued
0.6455 Remote Similarity NPD3047 Approved
0.6455 Remote Similarity NPD3046 Approved
0.6455 Remote Similarity NPD3048 Approved
0.6455 Remote Similarity NPD179 Clinical (unspecified phase)
0.6449 Remote Similarity NPD4813 Approved
0.6449 Remote Similarity NPD4117 Approved
0.6449 Remote Similarity NPD4263 Approved
0.6446 Remote Similarity NPD5351 Clinical (unspecified phase)
0.6446 Remote Similarity NPD5350 Clinical (unspecified phase)
0.6442 Remote Similarity NPD7631 Approved
0.6434 Remote Similarity NPD4097 Suspended
0.6429 Remote Similarity NPD6038 Clinical (unspecified phase)
0.6417 Remote Similarity NPD4416 Clinical (unspecified phase)
0.6417 Remote Similarity NPD2286 Discontinued
0.6417 Remote Similarity NPD1751 Approved
0.641 Remote Similarity NPD4032 Approved
0.641 Remote Similarity NPD4031 Approved
0.6406 Remote Similarity NPD3620 Phase 2
0.6406 Remote Similarity NPD3619 Clinical (unspecified phase)
0.6404 Remote Similarity NPD3643 Approved
0.6404 Remote Similarity NPD3644 Approved
0.6404 Remote Similarity NPD3642 Approved
0.6404 Remote Similarity NPD4025 Clinical (unspecified phase)
0.6396 Remote Similarity NPD5048 Discontinued
0.6392 Remote Similarity NPD3979 Approved
0.6392 Remote Similarity NPD3904 Approved
0.6392 Remote Similarity NPD3903 Approved
0.6392 Remote Similarity NPD3981 Approved
0.6389 Remote Similarity NPD7798 Approved
0.6387 Remote Similarity NPD4479 Discontinued
0.6387 Remote Similarity NPD2106 Clinical (unspecified phase)
0.6381 Remote Similarity NPD1066 Discontinued
0.6374 Remote Similarity NPD9497 Clinical (unspecified phase)
0.6364 Remote Similarity NPD3682 Approved
0.6364 Remote Similarity NPD4656 Approved
0.6364 Remote Similarity NPD4635 Approved
0.6364 Remote Similarity NPD9491 Approved
0.6364 Remote Similarity NPD4658 Approved
0.6364 Remote Similarity NPD3680 Approved
0.6364 Remote Similarity NPD5738 Clinical (unspecified phase)
0.6354 Remote Similarity NPD225 Approved
0.6354 Remote Similarity NPD227 Approved
0.6349 Remote Similarity NPD2605 Approved
0.6349 Remote Similarity NPD2606 Approved
0.6348 Remote Similarity NPD6124 Clinical (unspecified phase)
0.6346 Remote Similarity NPD7609 Phase 3
0.6341 Remote Similarity NPD6025 Phase 1
0.6339 Remote Similarity NPD5704 Approved
0.6339 Remote Similarity NPD5705 Approved
0.6339 Remote Similarity NPD5706 Approved
0.6337 Remote Similarity NPD3099 Discontinued
0.6336 Remote Similarity NPD7742 Approved
0.6336 Remote Similarity NPD7743 Approved
0.633 Remote Similarity NPD289 Clinical (unspecified phase)
0.6328 Remote Similarity NPD7715 Approved
0.6328 Remote Similarity NPD7714 Approved
0.632 Remote Similarity NPD6917 Clinical (unspecified phase)
0.6316 Remote Similarity NPD3022 Approved
0.6316 Remote Similarity NPD4750 Phase 3
0.6316 Remote Similarity NPD1792 Phase 2
0.6316 Remote Similarity NPD3021 Approved
0.6308 Remote Similarity NPD6353 Approved
0.6303 Remote Similarity NPD6065 Approved
0.6299 Remote Similarity NPD5156 Approved
0.6299 Remote Similarity NPD5155 Approved
0.6296 Remote Similarity NPD5926 Approved
0.6286 Remote Similarity NPD4408 Approved
0.6286 Remote Similarity NPD4407 Approved
0.6286 Remote Similarity NPD4405 Approved

  Bioactivity similarity: Similar Natural Products in NPASS

Bioactivity similarity was calculated based on bioactivity descriptors of compounds. The bioactivity descriptors were calculated by a recently developed AI algorithm Chemical Checker (CC) [Nature Biotechnology, 38:1087–1096, 2020; Nature Communications, 12:3932, 2021], which evaluated bioactivity similarities at five levels:
A: chemistry similarity;
B: biological targets similarity;
C: networks similarity;
D: cell-based bioactivity similarity;
E: similarity based on clinical data.

Those 5 categories of CC bioactivity descriptors were calculated and then subjected to manifold projection using UMAP algorithm, to project all NPs on a 2-Dimensional space. The current NP was highlighted with a small circle in the 2-D map. Below figures: left-to-right, A-to-E.

A: chemistry similarity
B: biological targets similarity
C: networks similarity
D: cell-based bioactivity similarity
E: similarity based on clinical data